Wall clock time and date at job start Wed Apr 1 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 N 1.46493 * 109.47130 * 120.00740 * 2 1 3 5 5 C 1.34778 * 119.99838 * 274.99657 * 4 2 1 6 6 O 1.21281 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99959 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46405 * 300.00751 * 7 5 4 9 9 C 1.53154 * 109.46479 * 180.02562 * 7 5 4 10 10 C 1.53414 * 109.22316 * 170.49259 * 9 7 5 11 11 C 1.51048 * 108.19566 * 48.87679 * 10 9 7 12 12 N 1.30090 * 127.38686 * 163.92308 * 11 10 9 13 13 C 1.34288 * 109.21007 * 180.08363 * 12 11 10 14 14 C 1.34858 * 108.07069 * 359.97438 * 13 12 11 15 15 N 1.35416 * 123.98164 * 343.97111 * 11 10 9 16 16 C 1.46476 * 124.82928 * 359.90997 * 15 11 10 17 17 C 1.53005 * 109.46887 * 240.00550 * 2 1 3 18 18 C 1.53050 * 109.45849 * 64.99892 * 17 2 1 19 19 C 1.53193 * 109.30912 * 178.62596 * 18 17 2 20 20 N 1.46927 * 108.77611 * 54.63249 * 19 18 17 21 21 C 1.36934 * 120.62780 * 126.36533 * 20 19 18 22 22 H 1.08000 * 120.00322 * 332.25176 * 21 20 19 23 23 C 1.38816 * 120.00086 * 152.24755 * 21 20 19 24 24 N 1.31613 * 120.00160 * 143.92668 * 23 21 20 25 25 Si 1.86799 * 119.99694 * 323.92725 * 23 21 20 26 26 H 1.48502 * 109.47330 * 269.99872 * 25 23 21 27 27 H 1.48502 * 109.47153 * 149.99573 * 25 23 21 28 28 H 1.48498 * 109.47339 * 30.00025 * 25 23 21 29 29 C 1.46927 * 118.74237 * 306.64192 * 20 19 18 30 30 C 1.52763 * 109.00494 * 53.30827 * 29 20 19 31 31 H 1.09007 * 109.46436 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46989 * 299.99014 * 1 2 3 33 33 H 1.08993 * 109.47122 * 60.00055 * 1 2 3 34 34 H 0.96999 * 120.00279 * 95.00765 * 4 2 1 35 35 H 1.08998 * 109.50706 * 290.43936 * 9 7 5 36 36 H 1.09002 * 109.50631 * 50.57937 * 9 7 5 37 37 H 1.08997 * 109.75631 * 289.18213 * 10 9 7 38 38 H 1.08998 * 109.71604 * 168.54795 * 10 9 7 39 39 H 1.08000 * 125.96245 * 179.97438 * 13 12 11 40 40 H 1.08002 * 126.64893 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.58401 * 223.11037 * 16 15 11 42 42 H 1.09000 * 109.69853 * 102.76105 * 16 15 11 43 43 H 1.09000 * 109.45600 * 184.96869 * 17 2 1 44 44 H 1.09002 * 109.49708 * 58.67922 * 18 17 2 45 45 H 1.08998 * 109.49389 * 298.57536 * 18 17 2 46 46 H 1.09003 * 109.58966 * 294.84963 * 19 18 17 47 47 H 1.08996 * 109.58637 * 174.41929 * 19 18 17 48 48 H 0.96997 * 120.00263 * 354.92097 * 24 23 21 49 49 H 1.08997 * 109.58985 * 173.13885 * 29 20 19 50 50 H 1.08996 * 109.58660 * 293.57114 * 29 20 19 51 51 H 1.09000 * 109.56531 * 185.55435 * 30 29 20 52 52 H 1.09003 * 109.36199 * 65.50219 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6500 -0.7289 3.5873 8 1 1.9778 -1.5513 3.8321 9 6 2.7008 0.2551 4.7599 10 6 2.9818 -0.5171 6.0554 11 6 4.1575 -1.4338 5.8126 12 7 4.8885 -2.0343 6.7055 13 6 5.8357 -2.7581 6.0871 14 6 5.6825 -2.5980 4.7569 15 7 4.6210 -1.7608 4.5830 16 6 4.0550 -1.2799 3.3204 17 6 2.0400 -0.7212 -1.2494 18 6 1.6349 0.0696 -2.4956 19 6 2.1765 -0.6371 -3.7422 20 7 1.7124 -2.0311 -3.7347 21 6 1.0519 -2.5523 -4.8151 22 1 0.4790 -1.9043 -5.4619 23 6 1.1186 -3.9135 -5.0790 24 7 0.0681 -4.5425 -5.5615 25 14 2.6995 -4.8523 -4.7492 26 1 3.5528 -4.8273 -5.9644 27 1 2.3762 -6.2591 -4.4002 28 1 3.4264 -4.2170 -3.6209 29 6 1.9651 -2.8535 -2.5437 30 6 1.4308 -2.1236 -1.3127 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2492 -1.6318 1.1524 35 1 3.4942 0.9830 4.5901 36 1 1.7443 0.7710 4.8438 37 1 2.1069 -1.1062 6.3304 38 1 3.2205 0.1828 6.8562 39 1 6.5886 -3.3628 6.5707 40 1 6.2841 -3.0466 3.9801 41 1 3.9952 -2.1040 2.6095 42 1 4.6857 -0.4902 2.9122 43 1 3.1264 -0.7988 -1.2058 44 1 2.0499 1.0759 -2.4387 45 1 0.5479 0.1264 -2.5529 46 1 3.2663 -0.6148 -3.7305 47 1 1.8082 -0.1342 -4.6363 48 1 -0.7742 -4.0724 -5.6636 49 1 1.4573 -3.8124 -2.6472 50 1 3.0372 -3.0155 -2.4322 51 1 1.7003 -2.6782 -0.4138 52 1 0.3456 -2.0461 -1.3811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997180773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:50 Heat of formation + Delta-G solvation = 36.371033 kcal Electronic energy + Delta-G solvation = -31207.411382 eV Core-core repulsion = 27207.860430 eV Total energy + Delta-G solvation = -3999.550952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.66029 -40.46407 -38.56531 -36.59671 -35.57564 -33.65158 -33.11967 -31.63488 -30.45521 -30.37405 -29.09069 -28.68878 -25.57894 -25.06173 -23.71798 -22.89224 -22.59663 -21.69416 -20.91709 -20.39177 -19.45068 -19.02406 -17.69965 -17.37974 -17.30384 -16.17641 -16.08225 -15.52929 -15.00035 -14.74371 -14.66862 -14.44070 -14.33029 -14.30725 -14.15622 -13.95788 -13.68634 -13.33844 -13.22409 -13.00565 -12.85848 -12.40538 -12.28594 -12.09684 -12.05975 -11.78647 -11.68570 -11.48378 -11.43123 -11.25532 -10.70753 -10.55206 -10.45904 -10.29617 -10.23523 -9.95334 -9.92279 -9.74363 -9.67500 -9.29265 -9.25984 -8.64475 -8.33647 -7.04995 -6.41578 -3.30066 1.73368 2.14023 2.43727 2.83428 2.88606 3.44232 3.52058 3.65136 3.80245 3.99393 4.07615 4.10694 4.53388 4.59730 4.61387 4.67826 4.78494 4.85274 4.87618 4.90097 4.93642 5.08846 5.13237 5.15554 5.30862 5.32402 5.41997 5.49129 5.50114 5.54361 5.62822 5.69449 5.78815 5.82480 5.92444 5.97282 6.02456 6.10136 6.19102 6.23036 6.36181 6.40565 6.44572 6.46770 6.61095 6.67667 6.70563 6.81605 6.96274 7.22220 7.81401 7.89797 8.02162 8.40782 8.98212 9.60250 10.19595 10.98782 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002552 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.351393 B =10971.236120 C =12368.466020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.531 6.531 7 C -0.123 4.123 8 H 0.110 0.890 9 C -0.105 4.105 10 C -0.034 4.034 11 C 0.206 3.794 12 N -0.490 5.490 13 C -0.032 4.032 14 C -0.053 4.053 15 N -0.455 5.455 16 C 0.114 3.886 17 C -0.086 4.086 18 C -0.126 4.126 19 C 0.145 3.855 20 N -0.598 5.598 21 C -0.362 4.362 22 H 0.063 0.937 23 C 0.003 3.997 24 N -0.898 5.898 25 Si 1.015 2.985 26 H -0.298 1.298 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.144 3.856 30 C -0.134 4.134 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.170 0.830 40 H 0.176 0.824 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.058 0.942 48 H 0.267 0.733 49 H 0.065 0.935 50 H 0.027 0.973 51 H 0.046 0.954 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 7.514 20.764 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.103 0.897 4 N -0.371 5.371 5 C 0.306 3.694 6 O -0.407 6.407 7 C -0.145 4.145 8 H 0.128 0.872 9 C -0.143 4.143 10 C -0.073 4.073 11 C -0.056 4.056 12 N -0.208 5.208 13 C -0.179 4.179 14 C -0.185 4.185 15 N -0.138 5.138 16 C -0.009 4.009 17 C -0.105 4.105 18 C -0.166 4.166 19 C 0.018 3.982 20 N -0.322 5.322 21 C -0.489 4.489 22 H 0.081 0.919 23 C -0.201 4.201 24 N -0.535 5.535 25 Si 0.845 3.155 26 H -0.226 1.226 27 H -0.221 1.221 28 H -0.196 1.196 29 C 0.018 3.982 30 C -0.174 4.174 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.188 0.812 40 H 0.193 0.807 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.045 0.955 51 H 0.064 0.936 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.544 6.981 21.294 23.644 hybrid contribution -0.283 0.693 -0.984 1.236 sum 7.261 7.674 20.309 22.893 Atomic orbital electron populations 1.22234 0.95083 1.02652 1.02184 1.21147 0.94476 0.96866 0.83328 0.89669 1.46273 1.66710 1.14252 1.09860 1.20096 0.78096 0.87210 0.83973 1.90728 1.49856 1.15584 1.84525 1.21690 0.96516 1.00684 0.95623 0.87180 1.21534 1.04923 0.96796 0.91089 1.20250 0.92623 0.95766 0.98656 1.23386 1.00169 1.02167 0.79892 1.70071 1.06888 1.11787 1.32092 1.22383 1.01027 1.04000 0.90514 1.22623 0.94970 1.01249 0.99690 1.45302 1.24853 1.36282 1.07411 1.21862 0.93858 1.00726 0.84479 1.21320 0.99938 0.96057 0.93151 1.22051 1.01642 0.97523 0.95380 1.20939 0.95567 0.86474 0.95180 1.44297 1.66851 1.07809 1.13239 1.20029 1.27290 0.93896 1.07725 0.91912 1.26119 1.02710 0.94059 0.97184 1.70881 1.00598 1.37137 1.44896 0.84650 0.78080 0.75855 0.76934 1.22605 1.22106 1.19650 1.21260 0.97164 0.94318 0.85507 1.22160 1.01560 0.94889 0.98753 0.91829 0.92822 0.91132 0.76513 0.90424 0.88685 0.89032 0.88208 0.81238 0.80662 0.88452 0.89012 0.91306 0.92769 0.91580 0.96421 0.92345 0.92301 0.91706 0.95542 0.93589 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.75 37.16 0.33 -1.62 16 2 C 0.15 1.67 2.35 -67.93 -0.16 1.51 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 N -0.72 -6.70 4.92 -53.80 -0.26 -6.97 16 5 C 0.52 5.08 7.10 -10.98 -0.08 5.00 16 6 O -0.53 -7.08 15.49 5.56 0.09 -6.99 16 7 C -0.12 -0.87 2.54 -91.56 -0.23 -1.11 16 8 H 0.11 0.68 8.12 -51.93 -0.42 0.25 16 9 C -0.11 -0.76 4.68 -26.44 -0.12 -0.89 16 10 C -0.03 -0.25 6.33 -27.50 -0.17 -0.42 16 11 C 0.21 2.07 7.65 -155.24 -1.19 0.88 16 12 N -0.49 -5.87 11.24 -10.62 -0.12 -5.99 16 13 C -0.03 -0.31 11.87 -17.68 -0.21 -0.52 16 14 C -0.05 -0.45 11.64 -16.76 -0.20 -0.64 16 15 N -0.46 -3.97 3.13 -113.76 -0.36 -4.33 16 16 C 0.11 0.76 6.11 -3.92 -0.02 0.73 16 17 C -0.09 -1.12 2.08 -90.57 -0.19 -1.31 16 18 C -0.13 -1.88 5.08 -26.61 -0.14 -2.01 16 19 C 0.14 2.70 6.52 -3.71 -0.02 2.68 16 20 N -0.60 -13.41 2.72 -172.58 -0.47 -13.88 16 21 C -0.36 -9.72 9.70 -15.06 -0.15 -9.87 16 22 H 0.06 1.82 8.06 -52.49 -0.42 1.40 16 23 C 0.00 0.10 4.82 -17.43 -0.08 0.01 16 24 N -0.90 -26.78 13.70 55.49 0.76 -26.02 16 25 Si 1.02 24.30 27.01 -169.99 -4.59 19.71 16 26 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.27 -5.84 4.73 56.52 0.27 -5.57 16 29 C 0.14 2.83 4.34 -3.93 -0.02 2.82 16 30 C -0.13 -2.01 4.70 -26.83 -0.13 -2.14 16 31 H 0.06 0.77 6.38 -51.92 -0.33 0.44 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 34 H 0.40 3.04 6.80 -40.82 -0.28 2.77 16 35 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.09 0.70 7.79 -51.93 -0.40 0.30 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.10 0.49 7.87 -51.93 -0.41 0.08 16 42 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.05 6.63 -51.93 -0.34 0.70 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 48 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 49 H 0.06 1.42 5.83 -51.93 -0.30 1.12 16 50 H 0.03 0.52 6.60 -51.93 -0.34 0.18 16 51 H 0.05 0.55 6.74 -51.93 -0.35 0.20 16 52 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -33.39 392.70 -10.42 -43.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.60 Total: 1.64 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.78 Total: -6.90 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.45 Total: -57.18 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.59 Total: 19.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.39 -10.42 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997180773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.178 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds