Wall clock time and date at job start Wed Apr 1 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 N 1.46493 * 109.47130 * 120.00740 * 2 1 3 5 5 C 1.34778 * 119.99838 * 274.99657 * 4 2 1 6 6 O 1.21281 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99959 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46405 * 300.00751 * 7 5 4 9 9 C 1.53154 * 109.46479 * 180.02562 * 7 5 4 10 10 C 1.53414 * 109.22316 * 170.49259 * 9 7 5 11 11 C 1.51048 * 108.19566 * 48.87679 * 10 9 7 12 12 N 1.30090 * 127.38686 * 163.92308 * 11 10 9 13 13 C 1.34288 * 109.21007 * 180.08363 * 12 11 10 14 14 C 1.34858 * 108.07069 * 359.97438 * 13 12 11 15 15 N 1.35416 * 123.98164 * 343.97111 * 11 10 9 16 16 C 1.46476 * 124.82928 * 359.90997 * 15 11 10 17 17 C 1.53005 * 109.46887 * 240.00550 * 2 1 3 18 18 C 1.53050 * 109.45849 * 64.99892 * 17 2 1 19 19 C 1.53193 * 109.30912 * 178.62596 * 18 17 2 20 20 N 1.46927 * 108.77611 * 54.63249 * 19 18 17 21 21 C 1.36934 * 120.62780 * 126.36533 * 20 19 18 22 22 H 1.08000 * 120.00322 * 332.25176 * 21 20 19 23 23 C 1.38816 * 120.00086 * 152.24755 * 21 20 19 24 24 N 1.31613 * 120.00160 * 143.92668 * 23 21 20 25 25 Si 1.86799 * 119.99694 * 323.92725 * 23 21 20 26 26 H 1.48502 * 109.47330 * 269.99872 * 25 23 21 27 27 H 1.48502 * 109.47153 * 149.99573 * 25 23 21 28 28 H 1.48498 * 109.47339 * 30.00025 * 25 23 21 29 29 C 1.46927 * 118.74237 * 306.64192 * 20 19 18 30 30 C 1.52763 * 109.00494 * 53.30827 * 29 20 19 31 31 H 1.09007 * 109.46436 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46989 * 299.99014 * 1 2 3 33 33 H 1.08993 * 109.47122 * 60.00055 * 1 2 3 34 34 H 0.96999 * 120.00279 * 95.00765 * 4 2 1 35 35 H 1.08998 * 109.50706 * 290.43936 * 9 7 5 36 36 H 1.09002 * 109.50631 * 50.57937 * 9 7 5 37 37 H 1.08997 * 109.75631 * 289.18213 * 10 9 7 38 38 H 1.08998 * 109.71604 * 168.54795 * 10 9 7 39 39 H 1.08000 * 125.96245 * 179.97438 * 13 12 11 40 40 H 1.08002 * 126.64893 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.58401 * 223.11037 * 16 15 11 42 42 H 1.09000 * 109.69853 * 102.76105 * 16 15 11 43 43 H 1.09000 * 109.45600 * 184.96869 * 17 2 1 44 44 H 1.09002 * 109.49708 * 58.67922 * 18 17 2 45 45 H 1.08998 * 109.49389 * 298.57536 * 18 17 2 46 46 H 1.09003 * 109.58966 * 294.84963 * 19 18 17 47 47 H 1.08996 * 109.58637 * 174.41929 * 19 18 17 48 48 H 0.96997 * 120.00263 * 354.92097 * 24 23 21 49 49 H 1.08997 * 109.58985 * 173.13885 * 29 20 19 50 50 H 1.08996 * 109.58660 * 293.57114 * 29 20 19 51 51 H 1.09000 * 109.56531 * 185.55435 * 30 29 20 52 52 H 1.09003 * 109.36199 * 65.50219 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6500 -0.7289 3.5873 8 1 1.9778 -1.5513 3.8321 9 6 2.7008 0.2551 4.7599 10 6 2.9818 -0.5171 6.0554 11 6 4.1575 -1.4338 5.8126 12 7 4.8885 -2.0343 6.7055 13 6 5.8357 -2.7581 6.0871 14 6 5.6825 -2.5980 4.7569 15 7 4.6210 -1.7608 4.5830 16 6 4.0550 -1.2799 3.3204 17 6 2.0400 -0.7212 -1.2494 18 6 1.6349 0.0696 -2.4956 19 6 2.1765 -0.6371 -3.7422 20 7 1.7124 -2.0311 -3.7347 21 6 1.0519 -2.5523 -4.8151 22 1 0.4790 -1.9043 -5.4619 23 6 1.1186 -3.9135 -5.0790 24 7 0.0681 -4.5425 -5.5615 25 14 2.6995 -4.8523 -4.7492 26 1 3.5528 -4.8273 -5.9644 27 1 2.3762 -6.2591 -4.4002 28 1 3.4264 -4.2170 -3.6209 29 6 1.9651 -2.8535 -2.5437 30 6 1.4308 -2.1236 -1.3127 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2492 -1.6318 1.1524 35 1 3.4942 0.9830 4.5901 36 1 1.7443 0.7710 4.8438 37 1 2.1069 -1.1062 6.3304 38 1 3.2205 0.1828 6.8562 39 1 6.5886 -3.3628 6.5707 40 1 6.2841 -3.0466 3.9801 41 1 3.9952 -2.1040 2.6095 42 1 4.6857 -0.4902 2.9122 43 1 3.1264 -0.7988 -1.2058 44 1 2.0499 1.0759 -2.4387 45 1 0.5479 0.1264 -2.5529 46 1 3.2663 -0.6148 -3.7305 47 1 1.8082 -0.1342 -4.6363 48 1 -0.7742 -4.0724 -5.6636 49 1 1.4573 -3.8124 -2.6472 50 1 3.0372 -3.0155 -2.4322 51 1 1.7003 -2.6782 -0.4138 52 1 0.3456 -2.0461 -1.3811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997180773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:49 Heat of formation + Delta-G solvation = 15.601188 kcal Electronic energy + Delta-G solvation = -31208.312030 eV Core-core repulsion = 27207.860430 eV Total energy + Delta-G solvation = -4000.451600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.29416 -41.30507 -39.75850 -37.38906 -36.75673 -34.70888 -34.18642 -33.08784 -31.84552 -31.29713 -30.11709 -29.36191 -26.91892 -25.79495 -24.80885 -24.27410 -23.69268 -22.36261 -22.14244 -21.30674 -20.44816 -19.99291 -19.19098 -18.38396 -18.03658 -17.02312 -16.78869 -16.47327 -16.22983 -16.03756 -15.79991 -15.44242 -15.29133 -15.20367 -15.01026 -14.86427 -14.79330 -14.59581 -14.39020 -13.99590 -13.81231 -13.79997 -13.45565 -13.06736 -12.94572 -12.89857 -12.72152 -12.52305 -12.35178 -12.24049 -12.03822 -12.01758 -11.74757 -11.63467 -11.37491 -11.10233 -11.02071 -10.97888 -10.86630 -10.57977 -10.40117 -10.11950 -9.28314 -8.97283 -8.55352 -5.39855 1.10711 1.44625 1.52427 1.59196 1.77477 1.80096 2.10731 2.17929 2.61919 2.99008 3.24351 3.42779 3.47346 3.51764 3.55680 3.77139 3.84176 3.98969 4.00840 4.09871 4.18504 4.31499 4.33775 4.34638 4.39612 4.50785 4.56094 4.57164 4.59810 4.63562 4.73765 4.74536 4.83166 4.93295 4.94743 4.98086 5.00980 5.07459 5.13144 5.14313 5.18449 5.23959 5.28853 5.33902 5.34627 5.49568 5.67379 5.85078 5.87306 6.20815 6.30093 6.49816 6.95615 7.15190 7.17234 7.68964 8.18410 8.81209 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002552 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.351393 B =10971.236120 C =12368.466020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.081 0.919 4 N -0.710 5.710 5 C 0.528 3.472 6 O -0.568 6.568 7 C -0.113 4.113 8 H 0.127 0.873 9 C -0.099 4.099 10 C -0.029 4.029 11 C 0.191 3.809 12 N -0.530 5.530 13 C -0.060 4.060 14 C -0.046 4.046 15 N -0.456 5.456 16 C 0.113 3.887 17 C -0.074 4.074 18 C -0.119 4.119 19 C 0.139 3.861 20 N -0.614 5.614 21 C -0.348 4.348 22 H 0.022 0.978 23 C -0.051 4.051 24 N -0.939 5.939 25 Si 1.064 2.936 26 H -0.302 1.302 27 H -0.300 1.300 28 H -0.229 1.229 29 C 0.136 3.864 30 C -0.125 4.125 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.412 0.588 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.183 0.817 40 H 0.206 0.794 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.251 0.749 49 H 0.039 0.961 50 H 0.043 0.957 51 H 0.085 0.915 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 7.546 22.686 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.099 0.901 4 N -0.362 5.362 5 C 0.314 3.686 6 O -0.446 6.446 7 C -0.135 4.135 8 H 0.144 0.856 9 C -0.138 4.138 10 C -0.068 4.068 11 C -0.072 4.072 12 N -0.249 5.249 13 C -0.207 4.207 14 C -0.179 4.179 15 N -0.138 5.138 16 C -0.009 4.009 17 C -0.093 4.093 18 C -0.158 4.158 19 C 0.014 3.986 20 N -0.339 5.339 21 C -0.477 4.477 22 H 0.040 0.960 23 C -0.249 4.249 24 N -0.579 5.579 25 Si 0.889 3.111 26 H -0.230 1.230 27 H -0.227 1.227 28 H -0.153 1.153 29 C 0.011 3.989 30 C -0.164 4.164 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.200 0.800 40 H 0.223 0.777 41 H 0.141 0.859 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.104 0.896 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.745 7.034 23.246 26.169 hybrid contribution -1.003 0.795 -1.609 2.056 sum 8.742 7.828 21.636 24.614 Atomic orbital electron populations 1.22190 0.95633 1.02329 1.01680 1.20834 0.93845 0.96566 0.83381 0.90141 1.46117 1.66295 1.14742 1.09089 1.20410 0.77141 0.86662 0.84401 1.90728 1.51447 1.17361 1.85066 1.21608 0.97249 1.00679 0.93952 0.85556 1.21453 1.04392 0.96630 0.91278 1.20289 0.92241 0.95554 0.98693 1.23781 1.00653 1.02403 0.80317 1.70021 1.08152 1.13110 1.33648 1.22774 1.01533 1.04779 0.91564 1.23096 0.94600 1.00326 0.99869 1.45435 1.24780 1.35992 1.07641 1.22009 0.93189 1.01706 0.83997 1.21201 1.00705 0.94569 0.92870 1.21931 1.00718 0.98735 0.94456 1.21087 0.96464 0.84540 0.96484 1.44413 1.67058 1.09465 1.13007 1.19870 1.26025 0.93446 1.08377 0.95969 1.27242 1.04512 0.95612 0.97528 1.71004 1.00823 1.37519 1.48522 0.84036 0.74490 0.74540 0.78032 1.23011 1.22707 1.15267 1.21376 0.97828 0.93526 0.86193 1.22022 1.00396 0.95967 0.97999 0.92027 0.93106 0.91928 0.75062 0.91471 0.88874 0.87889 0.87973 0.80034 0.77727 0.85948 0.88807 0.89633 0.90180 0.93045 0.94704 0.94203 0.94011 0.94275 0.93908 0.89643 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.75 71.98 0.63 -2.84 16 2 C 0.16 3.08 2.35 45.00 0.11 3.18 16 3 H 0.08 1.74 7.58 -2.39 -0.02 1.73 16 4 N -0.71 -10.23 4.92 -442.53 -2.18 -12.41 16 5 C 0.53 8.50 7.10 87.66 0.62 9.12 16 6 O -0.57 -13.80 15.49 -3.03 -0.05 -13.85 16 7 C -0.11 -1.22 2.54 -11.40 -0.03 -1.25 16 8 H 0.13 1.03 8.12 -2.39 -0.02 1.01 16 9 C -0.10 -1.23 4.68 30.78 0.14 -1.09 16 10 C -0.03 -0.37 6.33 30.10 0.19 -0.18 16 11 C 0.19 3.49 7.65 138.24 1.06 4.55 16 12 N -0.53 -12.18 11.24 -187.51 -2.11 -14.29 16 13 C -0.06 -1.10 11.87 83.54 0.99 -0.11 16 14 C -0.05 -0.65 11.64 83.22 0.97 0.32 16 15 N -0.46 -6.60 3.13 -513.82 -1.61 -8.21 16 16 C 0.11 1.06 6.11 86.47 0.53 1.58 16 17 C -0.07 -1.66 2.08 -10.76 -0.02 -1.68 16 18 C -0.12 -3.25 5.08 30.68 0.16 -3.09 16 19 C 0.14 4.97 6.52 86.36 0.56 5.54 16 20 N -0.61 -26.91 2.72 -699.93 -1.90 -28.81 16 21 C -0.35 -19.12 9.70 84.03 0.82 -18.30 16 22 H 0.02 1.37 8.06 -2.91 -0.02 1.35 16 23 C -0.05 -2.91 4.82 84.86 0.41 -2.50 16 24 N -0.94 -58.02 13.70 21.65 0.30 -57.72 16 25 Si 1.06 48.79 27.01 68.60 1.85 50.64 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.23 -8.83 4.73 99.48 0.47 -8.36 16 29 C 0.14 4.97 4.34 86.22 0.37 5.34 16 30 C -0.12 -3.30 4.70 30.53 0.14 -3.15 16 31 H 0.06 1.35 6.38 -2.38 -0.02 1.34 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.45 6.60 -2.39 -0.02 1.43 16 34 H 0.41 4.03 6.80 -92.71 -0.63 3.40 16 35 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.09 1.21 7.79 -2.39 -0.02 1.19 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.12 0.56 7.87 -2.39 -0.02 0.54 16 42 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.56 6.63 -2.39 -0.02 1.55 16 46 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.04 1.53 7.93 -2.39 -0.02 1.51 16 48 H 0.25 15.71 8.73 -92.71 -0.81 14.90 16 49 H 0.04 1.64 5.83 -2.39 -0.01 1.62 16 50 H 0.04 1.45 6.60 -2.39 -0.02 1.44 16 51 H 0.09 1.61 6.74 -2.39 -0.02 1.59 16 52 H 0.05 1.58 6.43 -2.39 -0.02 1.56 16 Total: -1.00 -76.09 392.70 1.97 -74.12 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.02 Total: 15.08 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 7.65 Total: -4.55 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -7.50 Total: -121.45 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.05 Total: -13.85 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.85 Total: 50.64 kcal Total: -76.09 1.97 -74.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997180773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.717 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds