Wall clock time and date at job start Wed Apr 1 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46787 * 2 1 4 4 N 1.46495 * 109.47316 * 119.99815 * 2 1 3 5 5 C 1.34777 * 120.00141 * 275.00163 * 4 2 1 6 6 O 1.21278 * 119.99624 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99966 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.43195 * 59.89729 * 7 5 4 9 9 C 1.53112 * 109.43215 * 179.75291 * 7 5 4 10 10 C 1.53493 * 109.31072 * 189.98029 * 9 7 5 11 11 C 1.50709 * 108.05049 * 311.28547 * 10 9 7 12 12 C 1.33866 * 128.67492 * 195.84148 * 11 10 9 13 13 N 1.34425 * 107.79664 * 179.85476 * 12 11 10 14 14 C 1.30791 * 109.32177 * 0.02562 * 13 12 11 15 15 N 1.34401 * 108.55141 * 0.04032 * 14 13 12 16 16 C 1.46473 * 128.44297 * 179.87612 * 15 14 13 17 17 C 1.52999 * 109.47097 * 240.00381 * 2 1 3 18 18 C 1.53043 * 109.46111 * 180.02562 * 17 2 1 19 19 C 1.53187 * 109.31144 * 178.59524 * 18 17 2 20 20 N 1.46926 * 108.76564 * 54.65722 * 19 18 17 21 21 C 1.36946 * 120.63246 * 126.40073 * 20 19 18 22 22 H 1.08001 * 119.99974 * 207.66271 * 21 20 19 23 23 C 1.38809 * 119.99905 * 27.66425 * 21 20 19 24 24 N 1.31625 * 119.99755 * 17.36761 * 23 21 20 25 25 Si 1.86796 * 120.00022 * 197.36606 * 23 21 20 26 26 H 1.48497 * 109.47084 * 60.00007 * 25 23 21 27 27 H 1.48506 * 109.47014 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47033 * 300.00221 * 25 23 21 29 29 C 1.46924 * 118.73759 * 306.37925 * 20 19 18 30 30 C 1.53037 * 109.46252 * 59.96921 * 17 2 1 31 31 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47189 * 300.00077 * 1 2 3 33 33 H 1.08995 * 109.47372 * 59.99987 * 1 2 3 34 34 H 0.97005 * 119.99428 * 94.99735 * 4 2 1 35 35 H 1.09003 * 109.49847 * 309.93550 * 9 7 5 36 36 H 1.09000 * 109.49516 * 70.03040 * 9 7 5 37 37 H 1.08993 * 109.74397 * 191.64495 * 10 9 7 38 38 H 1.08996 * 109.78147 * 70.94491 * 10 9 7 39 39 H 1.07997 * 126.10296 * 359.82604 * 12 11 10 40 40 H 1.07994 * 125.72305 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.60225 * 77.51597 * 16 15 14 42 42 H 1.09002 * 109.72622 * 317.12300 * 16 15 14 43 43 H 1.09005 * 109.45861 * 299.99522 * 17 2 1 44 44 H 1.08997 * 109.49627 * 298.56215 * 18 17 2 45 45 H 1.09004 * 109.49400 * 58.66033 * 18 17 2 46 46 H 1.08998 * 109.60135 * 294.86562 * 19 18 17 47 47 H 1.09001 * 109.58463 * 174.43522 * 19 18 17 48 48 H 0.96998 * 119.99823 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.59163 * 293.82055 * 29 20 19 50 50 H 1.09004 * 109.58875 * 173.39314 * 29 20 19 51 51 H 1.09000 * 109.49708 * 301.33490 * 30 17 2 52 52 H 1.09002 * 109.49923 * 61.43439 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8582 1.1584 2.4116 7 6 2.6489 -0.7287 3.5877 8 1 3.6473 -1.1226 3.3973 9 6 2.7060 0.2574 4.7576 10 6 3.4459 -0.3935 5.9344 11 6 2.8602 -1.7648 6.1532 12 6 2.9813 -2.5659 7.2189 13 7 2.2861 -3.6890 6.9698 14 6 1.7406 -3.6062 5.7840 15 7 2.0749 -2.4230 5.2411 16 6 1.7030 -1.8847 3.9307 17 6 2.0400 -0.7212 -1.2493 18 6 3.5704 -0.7216 -1.2487 19 6 4.0773 -1.4748 -2.4826 20 7 3.4747 -0.8769 -3.6819 21 6 4.2606 -0.4514 -4.7195 22 1 3.9218 0.3489 -5.3606 23 6 5.4928 -1.0487 -4.9472 24 7 5.7653 -2.2198 -4.4117 25 14 6.7639 -0.1906 -6.0135 26 1 7.1077 1.1234 -5.4133 27 1 7.9855 -1.0306 -6.1003 28 1 6.2088 0.0172 -7.3751 29 6 2.0129 -0.7447 -3.7469 30 6 1.5291 0.0001 -2.4986 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 2.2490 -1.6318 1.1525 35 1 3.2357 1.1585 4.4484 36 1 1.6928 0.5175 5.0639 37 1 3.3140 0.2108 6.8319 38 1 4.5071 -0.4793 5.7010 39 1 3.5386 -2.3487 8.1182 40 1 1.1249 -4.3619 5.3189 41 1 0.6768 -1.5188 3.9635 42 1 1.7889 -2.6650 3.1745 43 1 1.6766 -1.7489 -1.2491 44 1 3.9345 0.3055 -1.2742 45 1 3.9337 -1.2147 -0.3470 46 1 3.7904 -2.5241 -2.4139 47 1 5.1627 -1.3936 -2.5399 48 1 6.6262 -2.6374 -4.5711 49 1 1.5576 -1.7345 -3.7813 50 1 1.7362 -0.1818 -4.6384 51 1 0.4394 0.0206 -2.4868 52 1 1.9126 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997185368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:46 Heat of formation + Delta-G solvation = 30.437728 kcal Electronic energy + Delta-G solvation = -31063.191623 eV Core-core repulsion = 27063.383384 eV Total energy + Delta-G solvation = -3999.808239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.64992 -40.34305 -38.24818 -36.55999 -35.44286 -33.45106 -32.98571 -31.56808 -30.55907 -30.31188 -28.88917 -28.08472 -25.56037 -25.17855 -23.72148 -22.61315 -22.05167 -21.71421 -20.72844 -20.57088 -19.47732 -19.15875 -17.68946 -17.26668 -16.71517 -16.15883 -16.10970 -15.41929 -14.92008 -14.55519 -14.49705 -14.33165 -14.20690 -13.99221 -13.97414 -13.57834 -13.48032 -13.45138 -13.33041 -12.98411 -12.48689 -12.44272 -12.29021 -12.04665 -11.76739 -11.59774 -11.57401 -11.36708 -11.29577 -11.00826 -10.72494 -10.51115 -10.33128 -10.26278 -10.24395 -10.02063 -9.92442 -9.84215 -9.58814 -9.54314 -9.10656 -8.61361 -8.50559 -6.71854 -5.83285 -3.25041 1.76076 2.22913 2.49220 2.89694 2.96288 3.35368 3.41281 3.42769 3.88411 4.11248 4.18474 4.35912 4.46296 4.48127 4.66961 4.73087 4.76460 4.88666 4.95307 5.06221 5.10421 5.19102 5.22876 5.32715 5.41740 5.42095 5.45519 5.54097 5.63593 5.67613 5.71770 5.77042 5.88238 5.99360 6.02302 6.06306 6.17679 6.23836 6.33297 6.45708 6.48384 6.53327 6.61021 6.70038 6.76737 6.89155 6.92471 7.28466 7.34564 7.59022 7.75342 7.79545 8.00223 8.40948 9.17373 9.80992 10.37127 11.25233 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.002291 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.234645 B =12221.136319 C =12896.888019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.087 0.913 4 N -0.717 5.717 5 C 0.522 3.478 6 O -0.532 6.532 7 C -0.122 4.122 8 H 0.109 0.891 9 C -0.104 4.104 10 C -0.047 4.047 11 C -0.023 4.023 12 C -0.025 4.025 13 N -0.496 5.496 14 C 0.185 3.815 15 N -0.455 5.455 16 C 0.115 3.885 17 C -0.084 4.084 18 C -0.133 4.133 19 C 0.171 3.829 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.146 3.854 30 C -0.126 4.126 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.169 0.831 40 H 0.205 0.795 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.254 0.746 49 H 0.016 0.984 50 H 0.054 0.946 51 H 0.055 0.945 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 0.886 18.924 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.105 0.895 4 N -0.367 5.367 5 C 0.306 3.694 6 O -0.408 6.408 7 C -0.144 4.144 8 H 0.127 0.873 9 C -0.142 4.142 10 C -0.085 4.085 11 C -0.137 4.137 12 C -0.172 4.172 13 N -0.214 5.214 14 C -0.097 4.097 15 N -0.139 5.139 16 C -0.008 4.008 17 C -0.103 4.103 18 C -0.173 4.173 19 C 0.046 3.954 20 N -0.315 5.315 21 C -0.382 4.382 22 H 0.082 0.918 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C 0.019 3.981 30 C -0.166 4.166 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.186 0.814 40 H 0.222 0.778 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.422 0.999 19.298 21.499 hybrid contribution 0.858 0.386 -1.217 1.539 sum -8.563 1.385 18.081 20.054 Atomic orbital electron populations 1.22204 0.95552 1.01891 1.02363 1.21198 0.93559 0.97670 0.83625 0.89532 1.46181 1.66649 1.14075 1.09813 1.20107 0.77874 0.87328 0.84096 1.90723 1.49470 1.15721 1.84906 1.21655 1.01189 0.96332 0.95201 0.87263 1.21492 1.02411 0.97890 0.92448 1.20276 0.99463 0.89413 0.99375 1.21221 1.02216 0.98034 0.92273 1.21843 1.04593 0.91472 0.99341 1.70510 1.12856 1.24018 1.14039 1.24833 1.03978 0.88889 0.92024 1.45351 1.38672 1.15391 1.14467 1.21857 0.99562 0.96440 0.82945 1.21334 0.97253 0.98979 0.92745 1.22225 0.93556 1.01619 0.99860 1.20760 0.99492 0.92596 0.82603 1.44049 0.99521 1.72019 1.15910 1.19148 0.99192 1.12183 1.07681 0.91753 1.25024 1.00036 0.95311 0.99298 1.70021 1.22835 1.14021 1.47959 0.86379 0.81135 0.78985 0.80345 1.21040 1.21626 1.20861 1.20892 0.86101 0.96403 0.94683 1.22086 0.98717 1.00037 0.95720 0.92655 0.92758 0.91012 0.76652 0.89201 0.90794 0.89008 0.89695 0.81391 0.77831 0.89125 0.88340 0.91505 0.92678 0.93664 0.96630 0.89533 0.93606 0.96582 0.92774 0.92656 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.13 37.16 0.34 -1.39 16 2 C 0.14 1.74 2.16 -67.93 -0.15 1.60 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.72 -7.18 4.27 -53.81 -0.23 -7.41 16 5 C 0.52 5.55 7.10 -10.98 -0.08 5.47 16 6 O -0.53 -7.68 15.48 5.56 0.09 -7.60 16 7 C -0.12 -0.95 2.52 -91.58 -0.23 -1.18 16 8 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 9 C -0.10 -0.83 4.69 -26.42 -0.12 -0.96 16 10 C -0.05 -0.32 6.31 -27.62 -0.17 -0.50 16 11 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 12 C -0.03 -0.26 11.84 -17.95 -0.21 -0.47 16 13 N -0.50 -5.79 11.27 -14.87 -0.17 -5.96 16 14 C 0.18 1.68 12.66 -90.71 -1.15 0.54 16 15 N -0.45 -3.84 3.13 -114.10 -0.36 -4.20 16 16 C 0.11 0.75 6.13 -3.92 -0.02 0.73 16 17 C -0.08 -1.20 1.79 -90.58 -0.16 -1.36 16 18 C -0.13 -2.29 5.22 -26.61 -0.14 -2.43 16 19 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 20 N -0.59 -14.24 2.99 -172.32 -0.52 -14.76 16 21 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 22 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 23 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 24 N -0.90 -25.68 11.19 55.49 0.62 -25.06 16 25 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 30 C -0.13 -1.97 5.04 -26.61 -0.13 -2.10 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 6.40 -51.93 -0.33 0.42 16 34 H 0.40 3.22 8.01 -40.82 -0.33 2.89 16 35 H 0.09 0.78 7.77 -51.93 -0.40 0.38 16 36 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.10 0.46 7.85 -51.93 -0.41 0.05 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.68 7.41 -51.93 -0.38 0.30 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 51 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -33.06 402.00 -11.35 -44.41 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.77 Total: 1.24 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.04 Total: -3.09 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.65 Total: -57.39 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.06 -11.35 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997185368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.848 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds