Wall clock time and date at job start Wed Apr 1 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46783 * 2 1 4 4 N 1.46494 * 109.47119 * 119.99940 * 2 1 3 5 5 C 1.34772 * 120.00133 * 275.00299 * 4 2 1 6 6 O 1.21568 * 120.00392 * 0.02562 * 5 4 2 7 7 C 1.47718 * 120.00151 * 180.02562 * 5 4 2 8 8 N 1.32209 * 126.67321 * 359.68697 * 7 5 4 9 9 N 1.28852 * 110.14603 * 179.80760 * 8 7 5 10 10 H 0.96993 * 124.97678 * 180.08694 * 9 8 7 11 11 C 1.34321 * 110.04105 * 0.39966 * 9 8 7 12 12 C 1.35587 * 107.21363 * 359.83074 * 11 9 8 13 13 C 1.50379 * 124.61387 * 179.78696 * 12 11 9 14 14 C 1.53469 * 108.29059 * 343.77048 * 13 12 11 15 15 C 1.53108 * 109.51526 * 49.47230 * 14 13 12 16 16 C 1.50702 * 128.90243 * 179.87827 * 11 9 8 17 17 C 1.52999 * 109.47259 * 240.00228 * 2 1 3 18 18 C 1.53037 * 109.45888 * 180.02562 * 17 2 1 19 19 C 1.53195 * 109.31164 * 178.59942 * 18 17 2 20 20 N 1.46925 * 108.76445 * 54.65902 * 19 18 17 21 21 C 1.36936 * 120.63185 * 126.40398 * 20 19 18 22 22 H 1.07995 * 120.00129 * 331.82050 * 21 20 19 23 23 C 1.38814 * 120.00045 * 151.81981 * 21 20 19 24 24 N 1.31628 * 119.99879 * 343.08540 * 23 21 20 25 25 Si 1.86799 * 120.00098 * 163.07982 * 23 21 20 26 26 H 1.48495 * 109.47038 * 60.00050 * 25 23 21 27 27 H 1.48501 * 109.47097 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47029 * 300.00154 * 25 23 21 29 29 C 1.46926 * 118.73813 * 306.38226 * 20 19 18 30 30 C 1.53044 * 109.46229 * 59.97290 * 17 2 1 31 31 H 1.09001 * 109.47167 * 60.00394 * 1 2 3 32 32 H 1.08994 * 109.47103 * 299.99625 * 1 2 3 33 33 H 1.09008 * 109.46610 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99959 * 95.00415 * 4 2 1 35 35 H 1.08998 * 109.70277 * 103.45258 * 13 12 11 36 36 H 1.09001 * 109.69602 * 224.05498 * 13 12 11 37 37 H 1.09001 * 109.45760 * 289.46138 * 14 13 12 38 38 H 1.09000 * 109.46410 * 169.48817 * 14 13 12 39 39 H 1.09004 * 109.43766 * 169.90051 * 15 14 13 40 40 H 1.08993 * 109.44305 * 50.00883 * 15 14 13 41 41 H 1.08996 * 109.69151 * 283.01215 * 16 11 9 42 42 H 1.09006 * 109.69349 * 43.58939 * 16 11 9 43 43 H 1.09003 * 109.45985 * 300.00083 * 17 2 1 44 44 H 1.08997 * 109.49882 * 298.56337 * 18 17 2 45 45 H 1.09003 * 109.49742 * 58.66611 * 18 17 2 46 46 H 1.08995 * 109.60215 * 294.86764 * 19 18 17 47 47 H 1.09003 * 109.70559 * 174.50432 * 19 18 17 48 48 H 0.97001 * 119.99789 * 180.02562 * 24 23 21 49 49 H 1.09007 * 109.58608 * 293.82011 * 29 20 19 50 50 H 1.08995 * 109.70278 * 173.46691 * 29 20 19 51 51 H 1.09009 * 109.49360 * 301.33790 * 30 17 2 52 52 H 1.08997 * 109.49815 * 61.42655 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1611 2.4119 7 6 2.6399 -0.7145 3.5631 8 7 2.9854 -1.9874 3.6542 9 7 3.3731 -2.2572 4.8530 10 1 3.6750 -3.1274 5.1571 11 6 3.2914 -1.1586 5.6215 12 6 2.8271 -0.1543 4.8378 13 6 2.5827 1.2530 5.3081 14 6 2.5474 1.2488 6.8423 15 6 3.7709 0.5016 7.3800 16 6 3.6331 -0.9965 7.0803 17 6 2.0401 -0.7212 -1.2492 18 6 3.5704 -0.7216 -1.2486 19 6 4.0774 -1.4747 -2.4826 20 7 3.4749 -0.8768 -3.6818 21 6 4.2608 -0.4513 -4.7193 22 1 5.2719 -0.1217 -4.5309 23 6 3.7580 -0.4435 -6.0131 24 7 2.6780 -1.1375 -6.3036 25 14 4.6139 0.5522 -7.3419 26 1 6.0086 0.0681 -7.5020 27 1 3.8843 0.3947 -8.6257 28 1 4.6288 1.9856 -6.9541 29 6 2.0131 -0.7445 -3.7469 30 6 1.5293 0.0001 -2.4987 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.3873 1.9013 4.9611 36 1 1.6290 1.6098 4.9193 37 1 1.6394 0.7516 7.1833 38 1 2.5588 2.2753 7.2087 39 1 3.8426 0.6511 8.4574 40 1 4.6707 0.8864 6.9003 41 1 2.8386 -1.4221 7.6931 42 1 4.5745 -1.5022 7.2955 43 1 1.6766 -1.7488 -1.2491 44 1 3.9345 0.3055 -1.2740 45 1 3.9337 -1.2147 -0.3470 46 1 3.7905 -2.5240 -2.4139 47 1 5.1630 -1.3958 -2.5410 48 1 2.3268 -1.1324 -7.2079 49 1 1.5578 -1.7344 -3.7814 50 1 1.7343 -0.1829 -4.6385 51 1 0.4394 0.0207 -2.4868 52 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997198244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:49 Heat of formation + Delta-G solvation = 32.182681 kcal Electronic energy + Delta-G solvation = -30893.685202 eV Core-core repulsion = 26893.952630 eV Total energy + Delta-G solvation = -3999.732572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.07043 -39.62682 -37.79773 -37.24587 -35.23636 -33.07087 -32.63981 -31.27036 -30.24895 -29.91001 -29.54970 -28.88100 -25.43203 -24.50766 -24.07838 -22.73620 -22.38018 -21.93130 -20.40479 -20.16624 -19.33519 -18.96994 -18.05064 -17.08589 -16.56460 -16.24539 -15.83759 -14.98759 -14.82461 -14.57111 -14.25465 -14.11276 -14.03043 -13.81749 -13.50701 -13.45234 -13.32552 -13.23271 -13.14400 -12.84799 -12.42763 -12.27610 -12.14031 -11.74976 -11.32065 -11.29272 -11.18619 -11.07040 -11.02454 -10.93340 -10.90322 -10.65623 -10.36246 -10.20312 -10.08357 -9.98961 -9.82563 -9.55616 -9.45831 -9.36941 -8.89587 -8.80569 -8.41267 -6.60428 -5.73765 -3.15721 1.42879 1.86318 2.54640 3.26895 3.41922 3.43091 3.47324 3.49250 4.15295 4.25061 4.45949 4.50478 4.54397 4.82197 4.93697 4.98983 5.07086 5.14329 5.20431 5.27524 5.31469 5.42551 5.44752 5.52543 5.59566 5.60916 5.73010 5.74855 5.79574 5.81828 5.95251 6.01717 6.02802 6.05363 6.17099 6.24104 6.30191 6.36226 6.40906 6.56961 6.61655 6.68737 6.72182 6.81425 6.85619 6.92562 7.07164 7.42922 7.49724 7.71805 7.76870 7.84417 8.31100 8.51019 9.27252 9.90925 10.48078 11.34676 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.002102 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.907493 B =13314.534887 C =13544.179623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.087 0.913 4 N -0.706 5.706 5 C 0.602 3.398 6 O -0.533 6.533 7 C -0.002 4.002 8 N -0.261 5.261 9 N -0.374 5.374 10 H 0.444 0.556 11 C 0.006 3.994 12 C -0.143 4.143 13 C -0.043 4.043 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.047 4.047 17 C -0.083 4.083 18 C -0.126 4.126 19 C 0.146 3.854 20 N -0.592 5.592 21 C -0.250 4.250 22 H 0.064 0.936 23 C 0.001 3.999 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.172 3.828 30 C -0.133 4.133 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.015 0.985 47 H 0.051 0.949 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.087 0.913 51 H 0.054 0.946 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -0.980 29.232 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.105 0.895 4 N -0.356 5.356 5 C 0.386 3.614 6 O -0.408 6.408 7 C -0.162 4.162 8 N -0.097 5.097 9 N -0.087 5.087 10 H 0.288 0.712 11 C -0.121 4.121 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.102 4.102 18 C -0.165 4.165 19 C 0.020 3.980 20 N -0.315 5.315 21 C -0.380 4.380 22 H 0.081 0.919 23 C -0.197 4.197 24 N -0.549 5.549 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.210 1.210 29 C 0.046 3.954 30 C -0.173 4.173 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.072 0.928 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.635 -1.087 28.395 28.462 hybrid contribution 0.661 -0.026 -0.182 0.686 sum -0.974 -1.112 28.213 28.252 Atomic orbital electron populations 1.22206 0.95502 1.01966 1.02343 1.21204 0.93750 0.97583 0.83385 0.89478 1.46000 1.66033 1.14368 1.09231 1.16855 0.77457 0.85717 0.81402 1.90772 1.50743 1.14853 1.84444 1.21701 1.07978 0.90701 0.95831 1.73863 1.16595 1.17102 1.02163 1.42969 1.47934 1.11653 1.06148 0.71168 1.21163 1.06954 0.87705 0.96244 1.19889 1.06242 0.97464 0.91669 1.19988 1.03264 0.90769 0.94092 1.21672 0.98028 1.00686 0.95495 1.21567 0.99378 0.93209 1.01154 1.20224 1.01954 0.98555 0.87829 1.21326 0.96421 0.99298 0.93193 1.22036 0.94553 1.01330 0.98590 1.20885 0.96475 0.93904 0.86758 1.44046 1.02060 1.69883 1.15526 1.19142 0.97216 1.36026 0.85613 0.91878 1.25038 0.98472 0.99199 0.97032 1.70026 1.24607 1.40942 1.19281 0.86378 0.78896 0.80442 0.81111 1.20953 1.21672 1.21044 1.20758 0.83260 0.96793 0.94573 1.22268 0.98850 1.00089 0.96097 0.90926 0.92688 0.92682 0.76069 0.90546 0.89728 0.91751 0.91126 0.90902 0.91232 0.89944 0.90304 0.91498 0.92366 0.93335 0.96685 0.93032 0.93654 0.96544 0.89495 0.92774 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.13 37.16 0.34 -1.87 16 2 C 0.14 2.17 2.16 -67.93 -0.15 2.02 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -9.91 4.36 -54.80 -0.24 -10.15 16 5 C 0.60 9.09 7.79 -12.39 -0.10 9.00 16 6 O -0.53 -9.29 15.47 5.31 0.08 -9.21 16 7 C 0.00 -0.03 7.12 -82.98 -0.59 -0.62 16 8 N -0.26 -3.05 11.96 33.28 0.40 -2.65 16 9 N -0.37 -3.11 6.82 33.42 0.23 -2.89 16 10 H 0.44 1.99 8.96 -190.22 -1.70 0.29 16 11 C 0.01 0.05 7.12 -82.45 -0.59 -0.53 16 12 C -0.14 -1.62 5.99 -104.88 -0.63 -2.25 16 13 C -0.04 -0.43 5.54 -27.80 -0.15 -0.59 16 14 C -0.12 -0.82 5.91 -26.43 -0.16 -0.97 16 15 C -0.12 -0.61 5.89 -26.47 -0.16 -0.76 16 16 C -0.05 -0.24 6.31 -27.67 -0.17 -0.41 16 17 C -0.08 -1.38 1.79 -90.58 -0.16 -1.54 16 18 C -0.13 -2.25 5.22 -26.61 -0.14 -2.39 16 19 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 20 N -0.59 -15.05 2.99 -172.32 -0.52 -15.56 16 21 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 22 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 23 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 24 N -0.90 -26.49 11.19 55.49 0.62 -25.86 16 25 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 30 C -0.13 -2.52 5.04 -26.61 -0.13 -2.66 16 31 H 0.07 0.97 6.40 -51.93 -0.33 0.63 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.40 5.24 8.12 -40.82 -0.33 4.91 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 37 H 0.06 0.43 8.12 -51.93 -0.42 0.00 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.77 7.41 -51.93 -0.38 0.39 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 50 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 51 H 0.05 0.91 6.36 -51.92 -0.33 0.58 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -33.11 401.66 -11.53 -44.64 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -10.07 Total: 2.21 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.06 Total: -3.58 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.49 Total: -57.11 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.11 -11.53 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997198244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.824 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds