Wall clock time and date at job start Wed Apr 1 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46783 * 2 1 4 4 N 1.46494 * 109.47119 * 119.99940 * 2 1 3 5 5 C 1.34772 * 120.00133 * 275.00299 * 4 2 1 6 6 O 1.21568 * 120.00392 * 0.02562 * 5 4 2 7 7 C 1.47718 * 120.00151 * 180.02562 * 5 4 2 8 8 N 1.32209 * 126.67321 * 359.68697 * 7 5 4 9 9 N 1.28852 * 110.14603 * 179.80760 * 8 7 5 10 10 H 0.96993 * 124.97678 * 180.08694 * 9 8 7 11 11 C 1.34321 * 110.04105 * 0.39966 * 9 8 7 12 12 C 1.35587 * 107.21363 * 359.83074 * 11 9 8 13 13 C 1.50379 * 124.61387 * 179.78696 * 12 11 9 14 14 C 1.53469 * 108.29059 * 343.77048 * 13 12 11 15 15 C 1.53108 * 109.51526 * 49.47230 * 14 13 12 16 16 C 1.50702 * 128.90243 * 179.87827 * 11 9 8 17 17 C 1.52999 * 109.47259 * 240.00228 * 2 1 3 18 18 C 1.53037 * 109.45888 * 180.02562 * 17 2 1 19 19 C 1.53195 * 109.31164 * 178.59942 * 18 17 2 20 20 N 1.46925 * 108.76445 * 54.65902 * 19 18 17 21 21 C 1.36936 * 120.63185 * 126.40398 * 20 19 18 22 22 H 1.07995 * 120.00129 * 331.82050 * 21 20 19 23 23 C 1.38814 * 120.00045 * 151.81981 * 21 20 19 24 24 N 1.31628 * 119.99879 * 343.08540 * 23 21 20 25 25 Si 1.86799 * 120.00098 * 163.07982 * 23 21 20 26 26 H 1.48495 * 109.47038 * 60.00050 * 25 23 21 27 27 H 1.48501 * 109.47097 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47029 * 300.00154 * 25 23 21 29 29 C 1.46926 * 118.73813 * 306.38226 * 20 19 18 30 30 C 1.53044 * 109.46229 * 59.97290 * 17 2 1 31 31 H 1.09001 * 109.47167 * 60.00394 * 1 2 3 32 32 H 1.08994 * 109.47103 * 299.99625 * 1 2 3 33 33 H 1.09008 * 109.46610 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99959 * 95.00415 * 4 2 1 35 35 H 1.08998 * 109.70277 * 103.45258 * 13 12 11 36 36 H 1.09001 * 109.69602 * 224.05498 * 13 12 11 37 37 H 1.09001 * 109.45760 * 289.46138 * 14 13 12 38 38 H 1.09000 * 109.46410 * 169.48817 * 14 13 12 39 39 H 1.09004 * 109.43766 * 169.90051 * 15 14 13 40 40 H 1.08993 * 109.44305 * 50.00883 * 15 14 13 41 41 H 1.08996 * 109.69151 * 283.01215 * 16 11 9 42 42 H 1.09006 * 109.69349 * 43.58939 * 16 11 9 43 43 H 1.09003 * 109.45985 * 300.00083 * 17 2 1 44 44 H 1.08997 * 109.49882 * 298.56337 * 18 17 2 45 45 H 1.09003 * 109.49742 * 58.66611 * 18 17 2 46 46 H 1.08995 * 109.60215 * 294.86764 * 19 18 17 47 47 H 1.09003 * 109.70559 * 174.50432 * 19 18 17 48 48 H 0.97001 * 119.99789 * 180.02562 * 24 23 21 49 49 H 1.09007 * 109.58608 * 293.82011 * 29 20 19 50 50 H 1.08995 * 109.70278 * 173.46691 * 29 20 19 51 51 H 1.09009 * 109.49360 * 301.33790 * 30 17 2 52 52 H 1.08997 * 109.49815 * 61.42655 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1611 2.4119 7 6 2.6399 -0.7145 3.5631 8 7 2.9854 -1.9874 3.6542 9 7 3.3731 -2.2572 4.8530 10 1 3.6750 -3.1274 5.1571 11 6 3.2914 -1.1586 5.6215 12 6 2.8271 -0.1543 4.8378 13 6 2.5827 1.2530 5.3081 14 6 2.5474 1.2488 6.8423 15 6 3.7709 0.5016 7.3800 16 6 3.6331 -0.9965 7.0803 17 6 2.0401 -0.7212 -1.2492 18 6 3.5704 -0.7216 -1.2486 19 6 4.0774 -1.4747 -2.4826 20 7 3.4749 -0.8768 -3.6818 21 6 4.2608 -0.4513 -4.7193 22 1 5.2719 -0.1217 -4.5309 23 6 3.7580 -0.4435 -6.0131 24 7 2.6780 -1.1375 -6.3036 25 14 4.6139 0.5522 -7.3419 26 1 6.0086 0.0681 -7.5020 27 1 3.8843 0.3947 -8.6257 28 1 4.6288 1.9856 -6.9541 29 6 2.0131 -0.7445 -3.7469 30 6 1.5293 0.0001 -2.4987 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.3873 1.9013 4.9611 36 1 1.6290 1.6098 4.9193 37 1 1.6394 0.7516 7.1833 38 1 2.5588 2.2753 7.2087 39 1 3.8426 0.6511 8.4574 40 1 4.6707 0.8864 6.9003 41 1 2.8386 -1.4221 7.6931 42 1 4.5745 -1.5022 7.2955 43 1 1.6766 -1.7488 -1.2491 44 1 3.9345 0.3055 -1.2740 45 1 3.9337 -1.2147 -0.3470 46 1 3.7905 -2.5240 -2.4139 47 1 5.1630 -1.3958 -2.5410 48 1 2.3268 -1.1324 -7.2079 49 1 1.5578 -1.7344 -3.7814 50 1 1.7343 -0.1829 -4.6385 51 1 0.4394 0.0207 -2.4868 52 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997198244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:48 Heat of formation + Delta-G solvation = 11.619795 kcal Electronic energy + Delta-G solvation = -30894.576876 eV Core-core repulsion = 26893.952630 eV Total energy + Delta-G solvation = -4000.624246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.84522 -40.87358 -39.33107 -37.81956 -36.78544 -34.53209 -33.73475 -32.78971 -31.43206 -30.91230 -30.80594 -30.07279 -27.17935 -25.73822 -24.68276 -24.19228 -23.63399 -23.05443 -21.81448 -21.36275 -20.57728 -19.96896 -18.74375 -18.72795 -17.94675 -17.10608 -17.02546 -16.76298 -15.90926 -15.72866 -15.43367 -15.32854 -15.17072 -14.88873 -14.78928 -14.62613 -14.55424 -14.32768 -14.12372 -14.05096 -13.90086 -13.48909 -13.39329 -12.97706 -12.90739 -12.75024 -12.62219 -12.41134 -12.17906 -12.02980 -11.87011 -11.80194 -11.73023 -11.67237 -11.59281 -11.49929 -11.27040 -11.09524 -10.95484 -10.52434 -10.41429 -10.01431 -9.61683 -8.66296 -7.86914 -5.31959 0.49877 1.09187 1.45686 1.48549 1.55178 1.85432 2.23269 2.35308 2.51334 3.26793 3.35827 3.64894 3.67691 3.73110 3.88241 3.95393 4.05336 4.06985 4.21138 4.31065 4.36916 4.40478 4.47417 4.55258 4.58982 4.60688 4.67431 4.73455 4.77293 4.80564 4.90522 4.98430 4.99697 5.03153 5.06386 5.12150 5.16011 5.17450 5.26091 5.27562 5.33793 5.35265 5.43873 5.48957 5.50802 5.51857 5.55625 5.65903 5.80189 6.11812 6.40200 6.48478 6.86579 7.16156 7.18322 7.87872 8.39272 9.19025 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.002102 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.907493 B =13314.534887 C =13544.179623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.068 0.932 4 N -0.700 5.700 5 C 0.599 3.401 6 O -0.565 6.565 7 C -0.033 4.033 8 N -0.273 5.273 9 N -0.356 5.356 10 H 0.462 0.538 11 C 0.026 3.974 12 C -0.172 4.172 13 C -0.043 4.043 14 C -0.117 4.117 15 C -0.114 4.114 16 C -0.045 4.045 17 C -0.072 4.072 18 C -0.112 4.112 19 C 0.143 3.857 20 N -0.612 5.612 21 C -0.264 4.264 22 H 0.061 0.939 23 C -0.050 4.050 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.280 1.280 29 C 0.178 3.822 30 C -0.120 4.120 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.018 0.982 47 H 0.048 0.952 48 H 0.250 0.750 49 H 0.000 1.000 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -1.805 32.259 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.086 0.914 4 N -0.350 5.350 5 C 0.385 3.615 6 O -0.442 6.442 7 C -0.191 4.191 8 N -0.110 5.110 9 N -0.072 5.072 10 H 0.310 0.690 11 C -0.102 4.102 12 C -0.182 4.182 13 C -0.081 4.081 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.084 4.084 17 C -0.091 4.091 18 C -0.151 4.151 19 C 0.018 3.982 20 N -0.335 5.335 21 C -0.394 4.394 22 H 0.079 0.921 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.052 3.948 30 C -0.160 4.160 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.018 0.982 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.005 -1.947 31.448 31.525 hybrid contribution 0.513 0.165 -1.054 1.184 sum -0.492 -1.782 30.394 30.450 Atomic orbital electron populations 1.22150 0.94158 1.02780 1.02343 1.20940 0.94664 0.96300 0.82973 0.91353 1.45888 1.65865 1.14545 1.08710 1.17151 0.76868 0.85442 0.82050 1.90746 1.52189 1.16259 1.85042 1.21538 1.10016 0.91692 0.95839 1.73778 1.17165 1.16338 1.03757 1.43079 1.46308 1.12585 1.05211 0.68981 1.21668 1.04446 0.86537 0.97531 1.20166 1.07731 0.98683 0.91633 1.19950 1.01348 0.90165 0.96658 1.21656 0.99205 1.01793 0.92750 1.21593 0.97940 0.93083 1.02558 1.20449 1.03974 0.98731 0.85198 1.21179 0.95437 0.99631 0.92860 1.21869 0.95390 1.00140 0.97743 1.21021 0.96310 0.94243 0.86673 1.44325 1.02563 1.70503 1.16147 1.19443 0.97519 1.35846 0.86632 0.92080 1.25781 0.99422 1.00320 0.99054 1.70173 1.26020 1.42288 1.19414 0.85368 0.78040 0.78947 0.78259 1.20143 1.21796 1.20638 1.20590 0.82791 0.95881 0.95538 1.22068 1.00267 0.98859 0.94793 0.90483 0.93126 0.91422 0.75239 0.91936 0.92207 0.91363 0.90238 0.88279 0.92046 0.87816 0.87696 0.90561 0.93724 0.90903 0.96444 0.93363 0.94067 0.98204 0.92902 0.90344 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.13 71.98 0.66 -3.44 16 2 C 0.16 4.56 2.16 44.99 0.10 4.66 16 3 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 4 N -0.70 -19.23 4.36 -445.55 -1.94 -21.18 16 5 C 0.60 18.31 7.79 86.75 0.68 18.98 16 6 O -0.56 -20.39 15.47 -3.93 -0.06 -20.45 16 7 C -0.03 -0.86 7.12 42.14 0.30 -0.56 16 8 N -0.27 -5.99 11.96 -48.62 -0.58 -6.57 16 9 N -0.36 -5.03 6.82 -48.18 -0.33 -5.36 16 10 H 0.46 2.65 8.96 -219.80 -1.97 0.68 16 11 C 0.03 0.38 7.12 41.57 0.30 0.68 16 12 C -0.17 -3.80 5.99 -20.03 -0.12 -3.92 16 13 C -0.04 -0.88 5.54 29.90 0.17 -0.71 16 14 C -0.12 -1.38 5.91 30.79 0.18 -1.20 16 15 C -0.11 -0.84 5.89 30.77 0.18 -0.66 16 16 C -0.05 -0.27 6.31 29.98 0.19 -0.08 16 17 C -0.07 -2.33 1.79 -10.77 -0.02 -2.35 16 18 C -0.11 -3.94 5.22 30.67 0.16 -3.78 16 19 C 0.14 6.11 6.52 86.36 0.56 6.68 16 20 N -0.61 -31.64 2.99 -699.10 -2.09 -33.73 16 21 C -0.26 -15.01 9.58 84.03 0.81 -14.21 16 22 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 23 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 24 N -0.93 -56.03 11.19 21.65 0.24 -55.79 16 25 Si 0.97 45.97 29.59 68.60 2.03 48.00 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 C 0.18 8.68 5.30 86.36 0.46 9.14 16 30 C -0.12 -4.54 5.04 30.67 0.15 -4.39 16 31 H 0.08 1.94 6.40 -2.39 -0.02 1.93 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.41 10.15 8.12 -92.70 -0.75 9.40 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.47 7.67 -2.39 -0.02 1.46 16 37 H 0.07 0.76 8.12 -2.39 -0.02 0.75 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 2.21 7.41 -2.39 -0.02 2.20 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 50 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 51 H 0.08 2.57 6.36 -2.38 -0.02 2.55 16 52 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.47 401.66 0.64 -73.83 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -1.79 Total: 18.87 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.16 Total: 2.38 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.70 Total: -122.63 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.47 0.64 -73.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997198244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.447 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds