Wall clock time and date at job start Wed Apr 1 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 N 1.46506 * 109.47259 * 119.99692 * 2 1 3 5 5 C 1.34773 * 119.99884 * 275.00035 * 4 2 1 6 6 O 1.21286 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00078 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.43298 * 299.90092 * 7 5 4 9 9 C 1.53023 * 109.43206 * 180.02562 * 7 5 4 10 10 C 1.53375 * 109.74975 * 168.19740 * 9 7 5 11 11 C 1.50948 * 108.20265 * 50.65117 * 10 9 7 12 12 N 1.30132 * 128.28488 * 163.35226 * 11 10 9 13 13 N 1.40311 * 108.12374 * 180.12838 * 12 11 10 14 14 H 0.97005 * 126.00635 * 179.97438 * 13 12 11 15 15 C 1.35204 * 107.99560 * 359.95895 * 13 12 11 16 16 C 1.34576 * 107.61258 * 359.96152 * 15 13 12 17 17 C 1.50887 * 128.32405 * 180.28578 * 16 15 13 18 18 C 1.53000 * 109.47270 * 239.99487 * 2 1 3 19 19 C 1.53039 * 109.45819 * 65.00351 * 18 2 1 20 20 C 1.53192 * 109.31596 * 178.63058 * 19 18 2 21 21 N 1.46931 * 108.77565 * 54.62962 * 20 19 18 22 22 C 1.36933 * 120.63025 * 126.37324 * 21 20 19 23 23 H 1.08003 * 119.99756 * 332.13537 * 22 21 20 24 24 C 1.38810 * 119.99898 * 152.13970 * 22 21 20 25 25 N 1.31610 * 120.00090 * 342.99442 * 24 22 21 26 26 Si 1.86805 * 119.99845 * 162.99929 * 24 22 21 27 27 H 1.48502 * 109.46992 * 266.23159 * 26 24 22 28 28 H 1.48503 * 109.46878 * 146.23043 * 26 24 22 29 29 H 1.48501 * 109.47000 * 26.23150 * 26 24 22 30 30 C 1.46930 * 118.73686 * 306.64806 * 21 20 19 31 31 C 1.52764 * 109.00948 * 53.30825 * 30 21 20 32 32 H 1.08997 * 109.47703 * 60.00226 * 1 2 3 33 33 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47662 * 300.00201 * 1 2 3 35 35 H 0.96996 * 120.00146 * 94.99766 * 4 2 1 36 36 H 1.09003 * 109.42472 * 288.28070 * 9 7 5 37 37 H 1.08992 * 109.42673 * 48.11761 * 9 7 5 38 38 H 1.08997 * 109.71617 * 170.32324 * 10 9 7 39 39 H 1.08998 * 109.71756 * 290.92904 * 10 9 7 40 40 H 1.07998 * 126.19503 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.71548 * 43.57518 * 17 16 15 42 42 H 1.08998 * 109.71780 * 282.92775 * 17 16 15 43 43 H 1.08999 * 109.46098 * 184.96868 * 18 2 1 44 44 H 1.09001 * 109.50122 * 58.67467 * 19 18 2 45 45 H 1.09005 * 109.49578 * 298.57417 * 19 18 2 46 46 H 1.09001 * 109.58323 * 294.84684 * 20 19 18 47 47 H 1.08996 * 109.59033 * 174.41764 * 20 19 18 48 48 H 0.97003 * 120.00299 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.58125 * 173.14505 * 30 21 20 50 50 H 1.08997 * 109.58640 * 293.56844 * 30 21 20 51 51 H 1.09002 * 109.56068 * 185.55082 * 31 30 21 52 52 H 1.08999 * 109.35752 * 65.49633 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 1 1.9745 -1.5491 3.8331 9 6 2.6994 0.2554 4.7586 10 6 2.9217 -0.5095 6.0692 11 6 4.1024 -1.4313 5.8828 12 7 4.8103 -2.0296 6.7962 13 7 5.8058 -2.7815 6.1541 14 1 6.4776 -3.3288 6.5902 15 6 5.6641 -2.6096 4.8205 16 6 4.6204 -1.7828 4.6251 17 6 4.0524 -1.2856 3.3187 18 6 2.0399 -0.7214 -1.2492 19 6 1.6350 0.0692 -2.4954 20 6 2.1765 -0.6376 -3.7420 21 7 1.7124 -2.0317 -3.7344 22 6 1.0519 -2.5530 -4.8147 23 1 0.4776 -1.9053 -5.4605 24 6 1.1204 -3.9139 -5.0796 25 7 2.0608 -4.6463 -4.5216 26 14 -0.1220 -4.7055 -6.2282 27 1 -1.2525 -5.2507 -5.4345 28 1 0.5311 -5.8067 -6.9806 29 1 -0.6320 -3.6885 -7.1824 30 6 1.9650 -2.8538 -2.5431 31 6 1.4306 -2.1238 -1.3122 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6317 1.1528 36 1 3.5182 0.9586 4.6060 37 1 1.7583 0.8024 4.8133 38 1 3.1285 0.1944 6.8753 39 1 2.0330 -1.0931 6.3097 40 1 6.2773 -3.0553 4.0513 41 1 3.9912 -2.1090 2.6072 42 1 4.6897 -0.4980 2.9166 43 1 3.1263 -0.7990 -1.2056 44 1 2.0499 1.0755 -2.4387 45 1 0.5480 0.1260 -2.5529 46 1 3.2663 -0.6153 -3.7302 47 1 1.8083 -0.1348 -4.6362 48 1 2.1090 -5.5973 -4.7070 49 1 1.4572 -3.8128 -2.6467 50 1 3.0370 -3.0159 -2.4316 51 1 1.7002 -2.6783 -0.4133 52 1 0.3456 -2.0462 -1.3808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997392343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:31 Heat of formation + Delta-G solvation = 35.553878 kcal Electronic energy + Delta-G solvation = -30979.147347 eV Core-core repulsion = 26979.560961 eV Total energy + Delta-G solvation = -3999.586386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.76757 -40.08430 -38.22587 -36.35122 -35.22967 -33.07638 -32.43316 -31.02842 -30.72130 -29.99239 -29.20897 -28.43959 -25.48590 -24.94582 -23.71202 -22.63161 -22.19077 -21.32377 -20.56600 -20.04034 -19.07738 -18.65785 -17.92748 -17.16678 -16.65295 -15.89420 -15.69121 -15.11767 -14.87937 -14.62642 -14.29248 -14.11690 -14.04768 -13.77201 -13.58961 -13.50908 -13.15858 -13.04615 -12.89637 -12.69167 -12.46713 -12.27073 -12.14766 -11.88623 -11.60767 -11.49675 -11.26387 -11.19028 -11.09644 -10.83373 -10.74416 -10.59247 -10.46263 -10.17332 -10.13269 -9.90632 -9.71514 -9.66494 -9.51480 -9.35568 -8.91597 -8.71568 -8.47217 -6.67065 -5.79778 -3.21672 1.61769 2.44393 2.56248 2.68920 3.24515 3.36599 3.44057 3.45120 4.12880 4.46292 4.48995 4.58699 4.60309 4.83124 4.95239 5.06790 5.14748 5.18908 5.21455 5.27053 5.35019 5.40449 5.42084 5.46604 5.54434 5.66552 5.67868 5.71029 5.77217 5.84468 5.88494 5.94971 6.05883 6.07748 6.14877 6.18232 6.29405 6.36922 6.37481 6.49296 6.56672 6.67169 6.74156 6.77861 6.84455 6.99173 7.00948 7.36611 7.39155 7.61111 7.64170 7.79210 8.29956 8.44728 9.21314 9.84897 10.41614 11.28725 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.932948 B =12127.729391 C =13278.383757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.081 0.919 4 N -0.720 5.720 5 C 0.518 3.482 6 O -0.545 6.545 7 C -0.105 4.105 8 H 0.099 0.901 9 C -0.095 4.095 10 C -0.040 4.040 11 C 0.084 3.916 12 N -0.292 5.292 13 N -0.486 5.486 14 H 0.439 0.561 15 C 0.065 3.935 16 C -0.234 4.234 17 C -0.031 4.031 18 C -0.085 4.085 19 C -0.126 4.126 20 C 0.146 3.854 21 N -0.592 5.592 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 C 0.171 3.829 31 C -0.136 4.136 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.178 0.822 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.053 0.947 48 H 0.253 0.747 49 H 0.086 0.914 50 H 0.015 0.985 51 H 0.043 0.957 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 5.408 20.100 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.099 0.901 4 N -0.371 5.371 5 C 0.303 3.697 6 O -0.422 6.422 7 C -0.127 4.127 8 H 0.117 0.883 9 C -0.134 4.134 10 C -0.079 4.079 11 C -0.085 4.085 12 N -0.114 5.114 13 N -0.194 5.194 14 H 0.283 0.717 15 C -0.081 4.081 16 C -0.246 4.246 17 C -0.070 4.070 18 C -0.104 4.104 19 C -0.166 4.166 20 C 0.019 3.981 21 N -0.315 5.315 22 C -0.379 4.379 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.548 5.548 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.045 3.955 31 C -0.176 4.176 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.195 0.805 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.033 0.967 51 H 0.061 0.939 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.997 5.891 21.306 22.663 hybrid contribution -0.054 -1.361 -1.273 1.864 sum 4.944 4.530 20.033 21.126 Atomic orbital electron populations 1.22220 0.95492 1.02445 1.01853 1.21097 0.94165 0.96803 0.83809 0.90067 1.46238 1.66794 1.14275 1.09813 1.20539 0.77354 0.87245 0.84513 1.90681 1.50449 1.16060 1.85019 1.21367 0.98084 0.99455 0.93760 0.88309 1.21373 1.03923 0.96817 0.91269 1.20181 0.93078 0.95857 0.98749 1.22416 0.97472 0.97692 0.90881 1.77007 1.02201 1.11321 1.20863 1.46332 1.27888 1.40624 1.04571 0.71731 1.22108 0.99299 0.99752 0.86922 1.19992 1.01516 1.07223 0.95850 1.19933 0.93657 1.00195 0.93174 1.21311 0.99953 0.96301 0.92842 1.22060 1.01315 0.97417 0.95761 1.20892 0.95672 0.86738 0.94773 1.44030 1.66173 1.07253 1.14001 1.19208 1.22248 0.91801 1.04691 0.91722 1.25026 0.97694 0.97902 0.99084 1.70031 1.31482 1.06204 1.47095 0.86295 0.81108 0.79060 0.80434 1.21520 1.21824 1.20409 1.20664 0.97077 0.94849 0.82867 1.22235 1.00887 0.94772 0.99657 0.91403 0.91938 0.93037 0.76459 0.90903 0.89775 0.89613 0.89633 0.80485 0.90371 0.90569 0.91454 0.93074 0.91838 0.96596 0.92830 0.93727 0.89611 0.96702 0.93851 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.75 37.15 0.33 -1.85 16 2 C 0.15 1.96 2.35 -67.93 -0.16 1.80 16 3 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.72 -8.40 4.91 -53.81 -0.26 -8.66 16 5 C 0.52 6.25 7.10 -10.99 -0.08 6.18 16 6 O -0.54 -8.49 15.43 5.55 0.09 -8.41 16 7 C -0.11 -0.97 2.47 -91.56 -0.23 -1.19 16 8 H 0.10 0.82 8.10 -51.93 -0.42 0.39 16 9 C -0.10 -0.86 4.65 -26.52 -0.12 -0.99 16 10 C -0.04 -0.33 6.31 -27.57 -0.17 -0.50 16 11 C 0.08 0.85 7.10 -82.34 -0.58 0.26 16 12 N -0.29 -3.15 12.68 33.75 0.43 -2.72 16 13 N -0.49 -3.84 7.37 30.35 0.22 -3.61 16 14 H 0.44 2.04 8.96 -182.43 -1.64 0.41 16 15 C 0.07 0.49 11.95 -17.36 -0.21 0.28 16 16 C -0.23 -2.14 5.89 -104.98 -0.62 -2.76 16 17 C -0.03 -0.26 5.40 -27.59 -0.15 -0.41 16 18 C -0.08 -1.29 2.08 -90.58 -0.19 -1.47 16 19 C -0.13 -2.06 5.08 -26.61 -0.14 -2.19 16 20 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 21 N -0.59 -14.27 3.00 -172.57 -0.52 -14.79 16 22 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 23 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 24 C 0.00 0.04 4.91 -17.44 -0.09 -0.05 16 25 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16 26 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 C 0.17 3.84 5.28 -3.93 -0.02 3.82 16 31 C -0.14 -2.32 4.70 -26.83 -0.13 -2.44 16 32 H 0.07 0.91 6.60 -51.93 -0.34 0.57 16 33 H 0.06 0.85 6.38 -51.93 -0.33 0.52 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.08 6.78 -40.82 -0.28 3.80 16 36 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.08 0.57 7.86 -51.93 -0.41 0.17 16 42 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.06 6.64 -51.93 -0.34 0.72 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 49 H 0.09 2.19 6.06 -51.93 -0.31 1.88 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.04 0.63 6.74 -51.93 -0.35 0.28 16 52 H 0.06 1.10 6.43 -51.93 -0.33 0.77 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -32.88 396.82 -10.93 -43.80 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -9.74 Total: 2.53 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.72 Total: -5.45 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.49 Total: -54.80 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.88 -10.93 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997392343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.358 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds