Wall clock time and date at job start Wed Apr 1 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 N 1.46506 * 109.47259 * 119.99692 * 2 1 3 5 5 C 1.34773 * 119.99884 * 275.00035 * 4 2 1 6 6 O 1.21286 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00078 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.43298 * 299.90092 * 7 5 4 9 9 C 1.53023 * 109.43206 * 180.02562 * 7 5 4 10 10 C 1.53375 * 109.74975 * 168.19740 * 9 7 5 11 11 C 1.50948 * 108.20265 * 50.65117 * 10 9 7 12 12 N 1.30132 * 128.28488 * 163.35226 * 11 10 9 13 13 N 1.40311 * 108.12374 * 180.12838 * 12 11 10 14 14 H 0.97005 * 126.00635 * 179.97438 * 13 12 11 15 15 C 1.35204 * 107.99560 * 359.95895 * 13 12 11 16 16 C 1.34576 * 107.61258 * 359.96152 * 15 13 12 17 17 C 1.50887 * 128.32405 * 180.28578 * 16 15 13 18 18 C 1.53000 * 109.47270 * 239.99487 * 2 1 3 19 19 C 1.53039 * 109.45819 * 65.00351 * 18 2 1 20 20 C 1.53192 * 109.31596 * 178.63058 * 19 18 2 21 21 N 1.46931 * 108.77565 * 54.62962 * 20 19 18 22 22 C 1.36933 * 120.63025 * 126.37324 * 21 20 19 23 23 H 1.08003 * 119.99756 * 332.13537 * 22 21 20 24 24 C 1.38810 * 119.99898 * 152.13970 * 22 21 20 25 25 N 1.31610 * 120.00090 * 342.99442 * 24 22 21 26 26 Si 1.86805 * 119.99845 * 162.99929 * 24 22 21 27 27 H 1.48502 * 109.46992 * 266.23159 * 26 24 22 28 28 H 1.48503 * 109.46878 * 146.23043 * 26 24 22 29 29 H 1.48501 * 109.47000 * 26.23150 * 26 24 22 30 30 C 1.46930 * 118.73686 * 306.64806 * 21 20 19 31 31 C 1.52764 * 109.00948 * 53.30825 * 30 21 20 32 32 H 1.08997 * 109.47703 * 60.00226 * 1 2 3 33 33 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47662 * 300.00201 * 1 2 3 35 35 H 0.96996 * 120.00146 * 94.99766 * 4 2 1 36 36 H 1.09003 * 109.42472 * 288.28070 * 9 7 5 37 37 H 1.08992 * 109.42673 * 48.11761 * 9 7 5 38 38 H 1.08997 * 109.71617 * 170.32324 * 10 9 7 39 39 H 1.08998 * 109.71756 * 290.92904 * 10 9 7 40 40 H 1.07998 * 126.19503 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.71548 * 43.57518 * 17 16 15 42 42 H 1.08998 * 109.71780 * 282.92775 * 17 16 15 43 43 H 1.08999 * 109.46098 * 184.96868 * 18 2 1 44 44 H 1.09001 * 109.50122 * 58.67467 * 19 18 2 45 45 H 1.09005 * 109.49578 * 298.57417 * 19 18 2 46 46 H 1.09001 * 109.58323 * 294.84684 * 20 19 18 47 47 H 1.08996 * 109.59033 * 174.41764 * 20 19 18 48 48 H 0.97003 * 120.00299 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.58125 * 173.14505 * 30 21 20 50 50 H 1.08997 * 109.58640 * 293.56844 * 30 21 20 51 51 H 1.09002 * 109.56068 * 185.55082 * 31 30 21 52 52 H 1.08999 * 109.35752 * 65.49633 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 1 1.9745 -1.5491 3.8331 9 6 2.6994 0.2554 4.7586 10 6 2.9217 -0.5095 6.0692 11 6 4.1024 -1.4313 5.8828 12 7 4.8103 -2.0296 6.7962 13 7 5.8058 -2.7815 6.1541 14 1 6.4776 -3.3288 6.5902 15 6 5.6641 -2.6096 4.8205 16 6 4.6204 -1.7828 4.6251 17 6 4.0524 -1.2856 3.3187 18 6 2.0399 -0.7214 -1.2492 19 6 1.6350 0.0692 -2.4954 20 6 2.1765 -0.6376 -3.7420 21 7 1.7124 -2.0317 -3.7344 22 6 1.0519 -2.5530 -4.8147 23 1 0.4776 -1.9053 -5.4605 24 6 1.1204 -3.9139 -5.0796 25 7 2.0608 -4.6463 -4.5216 26 14 -0.1220 -4.7055 -6.2282 27 1 -1.2525 -5.2507 -5.4345 28 1 0.5311 -5.8067 -6.9806 29 1 -0.6320 -3.6885 -7.1824 30 6 1.9650 -2.8538 -2.5431 31 6 1.4306 -2.1238 -1.3122 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6317 1.1528 36 1 3.5182 0.9586 4.6060 37 1 1.7583 0.8024 4.8133 38 1 3.1285 0.1944 6.8753 39 1 2.0330 -1.0931 6.3097 40 1 6.2773 -3.0553 4.0513 41 1 3.9912 -2.1090 2.6072 42 1 4.6897 -0.4980 2.9166 43 1 3.1263 -0.7990 -1.2056 44 1 2.0499 1.0755 -2.4387 45 1 0.5480 0.1260 -2.5529 46 1 3.2663 -0.6153 -3.7302 47 1 1.8083 -0.1348 -4.6362 48 1 2.1090 -5.5973 -4.7070 49 1 1.4572 -3.8128 -2.6467 50 1 3.0370 -3.0159 -2.4316 51 1 1.7002 -2.6783 -0.4133 52 1 0.3456 -2.0462 -1.3808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997392343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:30 Heat of formation + Delta-G solvation = 15.244715 kcal Electronic energy + Delta-G solvation = -30980.028018 eV Core-core repulsion = 26979.560961 eV Total energy + Delta-G solvation = -4000.467057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.41655 -41.09841 -39.56301 -37.25173 -36.57793 -34.50888 -33.33842 -32.44838 -31.56289 -31.40636 -30.41146 -29.37735 -27.10687 -25.71915 -24.99040 -23.96275 -23.48147 -22.06031 -21.83407 -21.02206 -20.14890 -19.72339 -18.58755 -18.54103 -18.02017 -16.95499 -16.78845 -16.40113 -15.92737 -15.65056 -15.64179 -15.36795 -15.12650 -14.98858 -14.73445 -14.63750 -14.23156 -14.09617 -13.99422 -13.75818 -13.66027 -13.49278 -13.11360 -12.93942 -12.84327 -12.83694 -12.66752 -12.55014 -12.38531 -12.12378 -11.96714 -11.89588 -11.81510 -11.64173 -11.47698 -11.26453 -11.14959 -10.93912 -10.61758 -10.48134 -10.32416 -9.96880 -9.34421 -8.62245 -7.83860 -5.28051 1.00445 1.47970 1.49694 1.58111 1.72643 1.79565 2.03905 2.29275 2.53760 3.30241 3.45247 3.75143 3.76646 3.88740 3.89768 3.94892 3.97437 4.11857 4.17255 4.34399 4.45602 4.46891 4.50668 4.55384 4.62648 4.66318 4.70338 4.77141 4.78766 4.83294 4.86177 5.00132 5.01640 5.04507 5.06496 5.10189 5.18370 5.23401 5.27540 5.31762 5.33450 5.36993 5.39524 5.49317 5.60053 5.65691 5.72511 5.73485 5.87873 6.43783 6.50502 6.67544 6.75796 7.20278 7.35809 7.92597 8.43003 9.21991 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.932948 B =12127.729391 C =13278.383757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.075 0.925 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.580 6.580 7 C -0.098 4.098 8 H 0.114 0.886 9 C -0.089 4.089 10 C -0.035 4.035 11 C 0.071 3.929 12 N -0.328 5.328 13 N -0.480 5.480 14 H 0.451 0.549 15 C 0.076 3.924 16 C -0.256 4.256 17 C -0.024 4.024 18 C -0.074 4.074 19 C -0.117 4.117 20 C 0.141 3.859 21 N -0.610 5.610 22 C -0.259 4.259 23 H 0.063 0.937 24 C -0.050 4.050 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.271 1.271 30 C 0.177 3.823 31 C -0.121 4.121 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.410 0.590 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.211 0.789 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.012 0.988 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.050 0.950 50 H -0.005 1.005 51 H 0.071 0.929 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 5.461 20.917 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.093 0.907 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.460 6.460 7 C -0.119 4.119 8 H 0.132 0.868 9 C -0.128 4.128 10 C -0.074 4.074 11 C -0.097 4.097 12 N -0.151 5.151 13 N -0.190 5.190 14 H 0.297 0.703 15 C -0.071 4.071 16 C -0.268 4.268 17 C -0.063 4.063 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.015 3.985 21 N -0.334 5.334 22 C -0.389 4.389 23 H 0.081 0.919 24 C -0.245 4.245 25 N -0.579 5.579 26 Si 0.791 3.209 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.195 1.195 30 C 0.051 3.949 31 C -0.160 4.160 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.228 0.772 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.013 0.987 51 H 0.090 0.910 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.951 5.949 22.145 23.459 hybrid contribution 0.043 -1.355 -1.546 2.057 sum 4.994 4.594 20.599 21.688 Atomic orbital electron populations 1.22168 0.95270 1.02344 1.01748 1.20829 0.94141 0.96267 0.83551 0.90685 1.46146 1.66454 1.14656 1.09245 1.20975 0.76413 0.86774 0.85057 1.90671 1.52041 1.17752 1.85571 1.21346 0.98890 0.99478 0.92163 0.86831 1.21287 1.03074 0.96637 0.91784 1.20174 0.93147 0.95796 0.98301 1.22696 0.97839 0.97835 0.91341 1.76939 1.03467 1.12665 1.22000 1.46395 1.27545 1.40191 1.04877 0.70267 1.22640 0.98702 0.98519 0.87235 1.20157 1.02582 1.08390 0.95659 1.19878 0.92724 1.00365 0.93302 1.21165 0.99845 0.95000 0.93262 1.21931 1.01129 0.98320 0.94203 1.21040 0.95494 0.85135 0.96782 1.44314 1.66362 1.08749 1.13997 1.19496 1.22081 0.92119 1.05224 0.91942 1.25716 0.99350 0.98451 1.00991 1.70171 1.33033 1.06034 1.48683 0.85334 0.78893 0.77972 0.78739 1.21298 1.22292 1.19537 1.20508 0.95598 0.94083 0.84691 1.22017 1.00291 0.95624 0.98033 0.91409 0.91978 0.93280 0.75335 0.92118 0.90368 0.89190 0.88581 0.77235 0.88918 0.91274 0.91339 0.90522 0.91994 0.96973 0.93158 0.94202 0.93118 0.98665 0.91010 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 8.75 71.98 0.63 -3.27 16 2 C 0.16 3.86 2.35 44.99 0.11 3.97 16 3 H 0.08 2.03 7.58 -2.38 -0.02 2.01 16 4 N -0.71 -14.93 4.91 -442.53 -2.17 -17.11 16 5 C 0.52 11.64 7.10 87.66 0.62 12.26 16 6 O -0.58 -17.44 15.43 -3.05 -0.05 -17.49 16 7 C -0.10 -1.61 2.47 -11.40 -0.03 -1.64 16 8 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 9 C -0.09 -1.53 4.65 30.73 0.14 -1.39 16 10 C -0.04 -0.54 6.31 30.05 0.19 -0.35 16 11 C 0.07 1.34 7.10 43.44 0.31 1.65 16 12 N -0.33 -6.73 12.68 -47.13 -0.60 -7.33 16 13 N -0.48 -6.72 7.37 -57.88 -0.43 -7.15 16 14 H 0.45 3.41 8.96 -213.18 -1.91 1.50 16 15 C 0.08 0.95 11.95 83.33 1.00 1.94 16 16 C -0.26 -4.18 5.89 -20.10 -0.12 -4.29 16 17 C -0.02 -0.36 5.40 30.04 0.16 -0.19 16 18 C -0.07 -2.07 2.08 -10.77 -0.02 -2.10 16 19 C -0.12 -3.59 5.08 30.67 0.16 -3.43 16 20 C 0.14 5.60 6.52 86.36 0.56 6.16 16 21 N -0.61 -29.55 3.00 -699.90 -2.10 -31.65 16 22 C -0.26 -13.98 9.58 84.03 0.81 -13.17 16 23 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 24 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 25 N -0.93 -53.93 11.20 21.65 0.24 -53.69 16 26 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 28 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 C 0.18 7.96 5.28 86.22 0.45 8.42 16 31 C -0.12 -3.92 4.70 30.53 0.14 -3.77 16 32 H 0.07 1.68 6.60 -2.39 -0.02 1.66 16 33 H 0.06 1.54 6.38 -2.38 -0.02 1.53 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.41 7.11 6.78 -92.71 -0.63 6.48 16 36 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 37 H 0.08 1.43 7.68 -2.39 -0.02 1.41 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.21 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.09 1.08 7.86 -2.39 -0.02 1.06 16 42 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 1.95 6.64 -2.38 -0.02 1.94 16 46 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 48 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 49 H 0.05 2.64 6.06 -2.38 -0.01 2.62 16 50 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 51 H 0.07 1.91 6.74 -2.39 -0.02 1.90 16 52 H 0.06 1.93 6.43 -2.39 -0.02 1.91 16 Total: -1.00 -71.80 396.82 0.86 -70.94 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -1.60 Total: 18.70 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.53 Total: -1.52 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -5.06 Total: -116.92 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.05 Total: -17.49 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.80 0.86 -70.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997392343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.184 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds