Wall clock time and date at job start Wed Apr 1 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 N 1.46496 * 109.46962 * 119.99787 * 2 1 3 5 5 C 1.34772 * 120.00137 * 274.99557 * 4 2 1 6 6 O 1.21636 * 120.00242 * 4.56584 * 5 4 2 7 7 C 1.47163 * 120.00127 * 184.55801 * 5 4 2 8 8 C 1.38092 * 126.94007 * 267.36566 * 7 5 4 9 9 C 1.39532 * 105.70575 * 180.02562 * 8 7 5 10 10 N 1.31070 * 107.60042 * 359.97438 * 9 8 7 11 11 N 1.28439 * 110.96479 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.19622 * 179.97438 * 11 10 9 13 13 C 1.51567 * 109.45171 * 180.12197 * 9 8 7 14 14 C 1.54383 * 105.13072 * 16.88338 * 13 9 8 15 15 C 1.50852 * 144.41345 * 0.05019 * 8 7 5 16 16 C 1.53000 * 109.47104 * 240.00192 * 2 1 3 17 17 C 1.53035 * 109.45917 * 180.02562 * 16 2 1 18 18 C 1.53195 * 109.31215 * 178.61022 * 17 16 2 19 19 N 1.46931 * 108.77522 * 54.63604 * 18 17 16 20 20 C 1.36928 * 120.63093 * 126.41325 * 19 18 17 21 21 H 1.08002 * 120.00168 * 210.81624 * 20 19 18 22 22 C 1.38813 * 120.00482 * 30.80984 * 20 19 18 23 23 N 1.31621 * 119.99492 * 11.54138 * 22 20 19 24 24 Si 1.86798 * 120.00349 * 191.54281 * 22 20 19 25 25 H 1.48494 * 109.47288 * 89.99790 * 24 22 20 26 26 H 1.48502 * 109.46987 * 209.99985 * 24 22 20 27 27 H 1.48502 * 109.47165 * 329.99662 * 24 22 20 28 28 C 1.46923 * 118.73515 * 306.39296 * 19 18 17 29 29 C 1.53038 * 109.46287 * 59.99778 * 16 2 1 30 30 H 1.09006 * 109.47223 * 299.99859 * 1 2 3 31 31 H 1.09002 * 109.47471 * 60.00101 * 1 2 3 32 32 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99981 * 95.00542 * 4 2 1 34 34 H 1.09003 * 109.46717 * 85.27911 * 12 11 10 35 35 H 1.08999 * 109.47609 * 205.27877 * 12 11 10 36 36 H 1.08997 * 109.47422 * 325.28036 * 12 11 10 37 37 H 1.09000 * 110.23816 * 258.03606 * 13 9 8 38 38 H 1.09005 * 110.47225 * 135.84787 * 13 9 8 39 39 H 1.08999 * 110.78129 * 215.53721 * 14 13 9 40 40 H 1.08999 * 110.77681 * 92.28354 * 14 13 9 41 41 H 1.09001 * 110.30286 * 43.99688 * 15 8 7 42 42 H 1.08995 * 110.38583 * 281.88738 * 15 8 7 43 43 H 1.09009 * 109.45746 * 300.02393 * 16 2 1 44 44 H 1.08998 * 109.50092 * 298.56075 * 17 16 2 45 45 H 1.09003 * 109.50010 * 58.65793 * 17 16 2 46 46 H 1.08998 * 109.58761 * 294.84519 * 18 17 16 47 47 H 1.09003 * 109.58385 * 174.41781 * 18 17 16 48 48 H 0.97007 * 119.99555 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.58672 * 293.81700 * 28 19 18 50 50 H 1.08997 * 109.58452 * 173.39814 * 28 19 18 51 51 H 1.09003 * 109.49693 * 301.34149 * 29 16 2 52 52 H 1.09001 * 109.49880 * 61.43211 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.7802 1.1390 2.4337 7 6 2.7314 -0.6841 3.5322 8 6 2.0514 -1.3554 4.5292 9 6 3.0300 -1.8079 5.4149 10 7 4.1933 -1.4200 4.9523 11 7 4.0564 -0.7628 3.8573 12 6 5.1532 -0.1855 3.0762 13 6 2.3714 -2.5656 6.5505 14 6 0.9509 -2.8961 6.0440 15 6 0.6864 -1.7763 5.0140 16 6 2.0400 -0.7212 -1.2493 17 6 3.5703 -0.7216 -1.2487 18 6 4.0773 -1.4745 -2.4828 19 7 3.4744 -0.8769 -3.6821 20 6 4.2601 -0.4514 -4.7197 21 1 3.9445 0.3822 -5.3295 22 6 5.4624 -1.0914 -4.9878 23 7 5.7430 -2.2365 -4.4027 24 14 6.6819 -0.3275 -6.1789 25 1 7.6079 0.5639 -5.4353 26 1 7.4591 -1.4014 -6.8481 27 1 5.9479 0.4622 -7.2001 28 6 2.0126 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4987 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 5.5600 -0.9430 2.4062 35 1 4.7796 0.6545 2.4907 36 1 5.9362 0.1614 3.7505 37 1 2.3189 -1.9394 7.4411 38 1 2.9192 -3.4833 6.7648 39 1 0.2291 -2.8498 6.8595 40 1 0.9292 -3.8750 5.5653 41 1 0.0916 -2.1584 4.1843 42 1 0.1771 -0.9380 5.4892 43 1 1.6761 -1.7488 -1.2493 44 1 3.9345 0.3054 -1.2741 45 1 3.9337 -1.2146 -0.3470 46 1 3.7906 -2.5239 -2.4139 47 1 5.1627 -1.3931 -2.5401 48 1 6.5834 -2.6835 -4.5898 49 1 1.5575 -1.7348 -3.7812 50 1 1.7357 -0.1822 -4.6384 51 1 0.4399 0.0215 -2.4870 52 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997392467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:59 Heat of formation + Delta-G solvation = 59.807699 kcal Electronic energy + Delta-G solvation = -31384.365564 eV Core-core repulsion = 27385.830903 eV Total energy + Delta-G solvation = -3998.534661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.82661 -39.83111 -37.94997 -37.15016 -35.39003 -33.05428 -32.38433 -31.47896 -30.49703 -30.28082 -28.83096 -27.68813 -26.63040 -25.49201 -23.98194 -22.58231 -22.03302 -21.57826 -20.57734 -20.44597 -19.80702 -19.03034 -17.61822 -16.83476 -16.71733 -16.10511 -15.90687 -15.27705 -14.94936 -14.74138 -14.55509 -14.10857 -13.98131 -13.55867 -13.43310 -13.34476 -13.16296 -13.04174 -12.94995 -12.88362 -12.72158 -12.42974 -12.27225 -12.07243 -11.71917 -11.56308 -11.45375 -11.27511 -11.26116 -10.96781 -10.75584 -10.54276 -10.48292 -10.31540 -10.24035 -10.14899 -9.93861 -9.58280 -9.53537 -9.14165 -9.07748 -8.73002 -8.51331 -6.65682 -5.81643 -3.28709 1.53848 1.94188 2.43292 2.59804 3.10553 3.34446 3.41455 3.42483 3.67871 4.43004 4.46104 4.56794 4.64967 4.74884 4.89085 4.91887 4.93507 5.03252 5.15462 5.21760 5.26533 5.36368 5.41263 5.45108 5.48050 5.51348 5.58373 5.66884 5.69991 5.71975 5.77422 5.83974 5.91386 5.92899 6.04254 6.06264 6.22302 6.26873 6.32188 6.36532 6.51036 6.55691 6.63264 6.65853 6.72720 6.79457 6.95676 7.31633 7.37755 7.63606 7.75992 7.93658 8.00296 8.44438 9.19541 9.81347 10.39137 11.26302 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002608 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.205985 B =10734.538773 C =11700.472288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.086 0.914 4 N -0.704 5.704 5 C 0.593 3.407 6 O -0.525 6.525 7 C -0.009 4.009 8 C -0.187 4.187 9 C 0.004 3.996 10 N -0.266 5.266 11 N -0.270 5.270 12 C 0.088 3.912 13 C -0.025 4.025 14 C -0.115 4.115 15 C -0.042 4.042 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.906 5.906 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -0.653 19.346 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.354 5.354 5 C 0.376 3.624 6 O -0.400 6.400 7 C -0.137 4.137 8 C -0.198 4.198 9 C -0.155 4.155 10 N -0.097 5.097 11 N -0.057 5.057 12 C -0.052 4.052 13 C -0.064 4.064 14 C -0.153 4.153 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.173 4.173 18 C 0.047 3.953 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.550 5.550 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.019 3.981 29 C -0.165 4.165 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.988 0.151 19.431 21.010 hybrid contribution 0.202 -0.022 -0.886 0.909 sum -7.786 0.129 18.545 20.113 Atomic orbital electron populations 1.22213 0.95344 1.02092 1.02473 1.21259 0.93932 0.97410 0.83314 0.89558 1.46135 1.65953 1.14286 1.09051 1.17005 0.78620 0.85429 0.81392 1.90841 1.49286 1.16553 1.83279 1.20510 0.85597 1.07924 0.99653 1.21095 0.98465 1.04105 0.96133 1.22784 0.88840 1.03785 1.00093 1.72666 1.25037 1.12302 0.99692 1.45720 1.04787 1.38542 1.16681 1.22237 0.87798 0.99676 0.95484 1.20453 0.93844 0.98650 0.93435 1.22380 0.95643 0.98770 0.98545 1.20350 0.91499 0.98044 0.98165 1.21345 0.97259 0.99126 0.92621 1.22246 0.93603 1.01535 0.99960 1.20765 0.99478 0.92596 0.82489 1.44016 0.99480 1.72058 1.15966 1.19191 1.01260 1.09596 1.08035 0.91822 1.25142 1.00210 0.95348 0.98865 1.69982 1.24093 1.15060 1.45888 0.86267 0.81309 0.78224 0.80817 1.21464 1.21698 1.20406 1.20904 0.86144 0.96414 0.94633 1.22082 0.98798 0.99967 0.95644 0.92500 0.90960 0.92523 0.76220 0.89009 0.88619 0.88256 0.89825 0.90236 0.89891 0.90566 0.90862 0.90271 0.91364 0.92707 0.93808 0.96620 0.89448 0.93654 0.96529 0.92761 0.92595 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.13 37.16 0.34 -1.60 16 2 C 0.14 1.92 2.12 -67.93 -0.14 1.78 16 3 H 0.09 1.30 7.65 -51.93 -0.40 0.91 16 4 N -0.70 -8.80 4.36 -54.97 -0.24 -9.04 16 5 C 0.59 8.41 6.97 -12.64 -0.09 8.32 16 6 O -0.52 -9.12 16.80 5.25 0.09 -9.03 16 7 C -0.01 -0.12 6.71 -82.14 -0.55 -0.67 16 8 C -0.19 -2.33 7.02 -104.12 -0.73 -3.06 16 9 C 0.00 0.05 8.14 -82.01 -0.67 -0.62 16 10 N -0.27 -3.66 11.91 33.86 0.40 -3.26 16 11 N -0.27 -3.51 3.75 -63.95 -0.24 -3.75 16 12 C 0.09 0.88 11.22 59.85 0.67 1.55 16 13 C -0.02 -0.20 6.79 -26.73 -0.18 -0.38 16 14 C -0.12 -0.76 7.06 -25.26 -0.18 -0.94 16 15 C -0.04 -0.38 6.76 -27.06 -0.18 -0.57 16 16 C -0.08 -1.26 1.79 -90.58 -0.16 -1.42 16 17 C -0.13 -2.34 5.22 -26.61 -0.14 -2.48 16 18 C 0.17 3.91 5.26 -3.71 -0.02 3.89 16 19 N -0.59 -14.31 2.99 -172.32 -0.51 -14.82 16 20 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 21 H 0.06 1.69 7.86 -52.49 -0.41 1.28 16 22 C 0.00 0.08 5.03 -17.43 -0.09 -0.01 16 23 N -0.91 -25.72 11.06 55.49 0.61 -25.10 16 24 Si 0.90 21.40 29.57 -169.99 -5.03 16.38 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 29 C -0.13 -2.00 5.04 -26.61 -0.13 -2.13 16 30 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.56 8.37 -40.82 -0.34 4.22 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.95 7.66 -51.93 -0.40 0.56 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.68 7.41 -51.93 -0.38 0.29 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 2.26 6.09 -51.93 -0.32 1.94 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 51 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -32.78 408.24 -9.99 -42.77 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.80 Total: 2.05 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.42 Total: -2.35 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.02 Total: -55.97 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.78 -9.99 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997392467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.577 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds