Wall clock time and date at job start Wed Apr 1 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 N 1.46496 * 109.46962 * 119.99787 * 2 1 3 5 5 C 1.34772 * 120.00137 * 274.99557 * 4 2 1 6 6 O 1.21636 * 120.00242 * 4.56584 * 5 4 2 7 7 C 1.47163 * 120.00127 * 184.55801 * 5 4 2 8 8 C 1.38092 * 126.94007 * 267.36566 * 7 5 4 9 9 C 1.39532 * 105.70575 * 180.02562 * 8 7 5 10 10 N 1.31070 * 107.60042 * 359.97438 * 9 8 7 11 11 N 1.28439 * 110.96479 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.19622 * 179.97438 * 11 10 9 13 13 C 1.51567 * 109.45171 * 180.12197 * 9 8 7 14 14 C 1.54383 * 105.13072 * 16.88338 * 13 9 8 15 15 C 1.50852 * 144.41345 * 0.05019 * 8 7 5 16 16 C 1.53000 * 109.47104 * 240.00192 * 2 1 3 17 17 C 1.53035 * 109.45917 * 180.02562 * 16 2 1 18 18 C 1.53195 * 109.31215 * 178.61022 * 17 16 2 19 19 N 1.46931 * 108.77522 * 54.63604 * 18 17 16 20 20 C 1.36928 * 120.63093 * 126.41325 * 19 18 17 21 21 H 1.08002 * 120.00168 * 210.81624 * 20 19 18 22 22 C 1.38813 * 120.00482 * 30.80984 * 20 19 18 23 23 N 1.31621 * 119.99492 * 11.54138 * 22 20 19 24 24 Si 1.86798 * 120.00349 * 191.54281 * 22 20 19 25 25 H 1.48494 * 109.47288 * 89.99790 * 24 22 20 26 26 H 1.48502 * 109.46987 * 209.99985 * 24 22 20 27 27 H 1.48502 * 109.47165 * 329.99662 * 24 22 20 28 28 C 1.46923 * 118.73515 * 306.39296 * 19 18 17 29 29 C 1.53038 * 109.46287 * 59.99778 * 16 2 1 30 30 H 1.09006 * 109.47223 * 299.99859 * 1 2 3 31 31 H 1.09002 * 109.47471 * 60.00101 * 1 2 3 32 32 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99981 * 95.00542 * 4 2 1 34 34 H 1.09003 * 109.46717 * 85.27911 * 12 11 10 35 35 H 1.08999 * 109.47609 * 205.27877 * 12 11 10 36 36 H 1.08997 * 109.47422 * 325.28036 * 12 11 10 37 37 H 1.09000 * 110.23816 * 258.03606 * 13 9 8 38 38 H 1.09005 * 110.47225 * 135.84787 * 13 9 8 39 39 H 1.08999 * 110.78129 * 215.53721 * 14 13 9 40 40 H 1.08999 * 110.77681 * 92.28354 * 14 13 9 41 41 H 1.09001 * 110.30286 * 43.99688 * 15 8 7 42 42 H 1.08995 * 110.38583 * 281.88738 * 15 8 7 43 43 H 1.09009 * 109.45746 * 300.02393 * 16 2 1 44 44 H 1.08998 * 109.50092 * 298.56075 * 17 16 2 45 45 H 1.09003 * 109.50010 * 58.65793 * 17 16 2 46 46 H 1.08998 * 109.58761 * 294.84519 * 18 17 16 47 47 H 1.09003 * 109.58385 * 174.41781 * 18 17 16 48 48 H 0.97007 * 119.99555 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.58672 * 293.81700 * 28 19 18 50 50 H 1.08997 * 109.58452 * 173.39814 * 28 19 18 51 51 H 1.09003 * 109.49693 * 301.34149 * 29 16 2 52 52 H 1.09001 * 109.49880 * 61.43211 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.7802 1.1390 2.4337 7 6 2.7314 -0.6841 3.5322 8 6 2.0514 -1.3554 4.5292 9 6 3.0300 -1.8079 5.4149 10 7 4.1933 -1.4200 4.9523 11 7 4.0564 -0.7628 3.8573 12 6 5.1532 -0.1855 3.0762 13 6 2.3714 -2.5656 6.5505 14 6 0.9509 -2.8961 6.0440 15 6 0.6864 -1.7763 5.0140 16 6 2.0400 -0.7212 -1.2493 17 6 3.5703 -0.7216 -1.2487 18 6 4.0773 -1.4745 -2.4828 19 7 3.4744 -0.8769 -3.6821 20 6 4.2601 -0.4514 -4.7197 21 1 3.9445 0.3822 -5.3295 22 6 5.4624 -1.0914 -4.9878 23 7 5.7430 -2.2365 -4.4027 24 14 6.6819 -0.3275 -6.1789 25 1 7.6079 0.5639 -5.4353 26 1 7.4591 -1.4014 -6.8481 27 1 5.9479 0.4622 -7.2001 28 6 2.0126 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4987 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 5.5600 -0.9430 2.4062 35 1 4.7796 0.6545 2.4907 36 1 5.9362 0.1614 3.7505 37 1 2.3189 -1.9394 7.4411 38 1 2.9192 -3.4833 6.7648 39 1 0.2291 -2.8498 6.8595 40 1 0.9292 -3.8750 5.5653 41 1 0.0916 -2.1584 4.1843 42 1 0.1771 -0.9380 5.4892 43 1 1.6761 -1.7488 -1.2493 44 1 3.9345 0.3054 -1.2741 45 1 3.9337 -1.2146 -0.3470 46 1 3.7906 -2.5239 -2.4139 47 1 5.1627 -1.3931 -2.5401 48 1 6.5834 -2.6835 -4.5898 49 1 1.5575 -1.7348 -3.7812 50 1 1.7357 -0.1822 -4.6384 51 1 0.4399 0.0215 -2.4870 52 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997392467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:57 Heat of formation + Delta-G solvation = 40.417127 kcal Electronic energy + Delta-G solvation = -31385.206402 eV Core-core repulsion = 27385.830903 eV Total energy + Delta-G solvation = -3999.375500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.73548 -41.00117 -39.38770 -37.86747 -36.85553 -34.62077 -33.32068 -32.79572 -31.85141 -31.64421 -30.19434 -28.42750 -27.40921 -27.17872 -25.27411 -23.90207 -23.56474 -22.44019 -21.76715 -21.34659 -21.09808 -20.29383 -18.79930 -18.42019 -17.77320 -17.13001 -16.93489 -16.77928 -15.97290 -15.86442 -15.77225 -15.49784 -15.28104 -14.90716 -14.89472 -14.64817 -14.34731 -14.00802 -13.86726 -13.79113 -13.69165 -13.59332 -13.47872 -13.17922 -13.08935 -12.75453 -12.73009 -12.67892 -12.42617 -12.18959 -12.03858 -11.96556 -11.82820 -11.79572 -11.51284 -11.49602 -11.39677 -11.13798 -11.05554 -10.55045 -10.23371 -10.10987 -9.58252 -8.61963 -7.86774 -5.36342 0.57194 0.95133 1.45216 1.46229 1.54375 1.54843 1.61270 2.07200 2.49862 2.89729 3.27864 3.45154 3.67726 3.74771 3.87594 3.89869 3.95423 4.03756 4.16445 4.21346 4.23805 4.29983 4.38441 4.44292 4.47094 4.54794 4.58605 4.69690 4.74631 4.79453 4.85094 4.87079 4.91321 4.97698 5.02914 5.04856 5.07611 5.09890 5.18625 5.22831 5.28492 5.38446 5.39403 5.40289 5.43792 5.50385 5.56385 5.65975 5.77885 5.79844 6.29443 6.41856 6.92390 7.01083 7.17005 7.88152 8.39299 9.18324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002608 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.205985 B =10734.538773 C =11700.472288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.070 0.930 4 N -0.693 5.693 5 C 0.602 3.398 6 O -0.561 6.561 7 C -0.033 4.033 8 C -0.196 4.196 9 C -0.008 4.008 10 N -0.291 5.291 11 N -0.276 5.276 12 C 0.082 3.918 13 C -0.026 4.026 14 C -0.104 4.104 15 C -0.046 4.046 16 C -0.073 4.073 17 C -0.119 4.119 18 C 0.180 3.820 19 N -0.612 5.612 20 C -0.260 4.260 21 H 0.063 0.937 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.269 1.269 28 C 0.140 3.860 29 C -0.114 4.114 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.063 0.937 46 H -0.003 1.003 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.052 0.948 51 H 0.091 0.909 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 -0.881 20.611 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.088 0.912 4 N -0.343 5.343 5 C 0.385 3.615 6 O -0.438 6.438 7 C -0.160 4.160 8 C -0.207 4.207 9 C -0.167 4.167 10 N -0.122 5.122 11 N -0.064 5.064 12 C -0.057 4.057 13 C -0.065 4.065 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.092 4.092 17 C -0.158 4.158 18 C 0.054 3.946 19 N -0.336 5.336 20 C -0.391 4.391 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.213 1.213 26 H -0.221 1.221 27 H -0.194 1.194 28 C 0.015 3.985 29 C -0.153 4.153 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.015 0.985 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.110 0.890 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.800 -0.084 20.692 22.896 hybrid contribution 0.742 0.033 -1.285 1.484 sum -9.058 -0.051 19.407 21.417 Atomic orbital electron populations 1.22164 0.93526 1.03127 1.02685 1.21064 0.95167 0.96167 0.82525 0.91172 1.46034 1.65291 1.14531 1.08453 1.17024 0.77924 0.84811 0.81711 1.90818 1.50998 1.18076 1.83909 1.20581 0.86274 1.09070 1.00107 1.21678 1.00254 1.03262 0.95524 1.23599 0.88325 1.03569 1.01181 1.72627 1.26189 1.13152 1.00213 1.45951 1.05066 1.38667 1.16762 1.22401 0.87695 0.99769 0.95839 1.20686 0.94380 0.98854 0.92559 1.22407 0.95154 0.98014 0.98603 1.20535 0.89816 0.99053 0.99032 1.21212 0.95020 0.99822 0.93193 1.22013 0.95690 1.00008 0.98103 1.20552 0.97416 0.92276 0.84349 1.44302 1.01265 1.72118 1.15920 1.19495 1.01835 1.09373 1.08372 0.91919 1.25848 1.01936 0.95913 1.00804 1.70138 1.24244 1.16333 1.47397 0.85303 0.79102 0.77249 0.79018 1.21330 1.22111 1.19401 1.21080 0.83761 0.96944 0.96745 1.21953 1.00840 0.98757 0.93799 0.93205 0.89853 0.91047 0.75277 0.88180 0.89004 0.86802 0.88560 0.89111 0.87159 0.89855 0.90305 0.89898 0.90426 0.93898 0.91864 0.98499 0.93191 0.94203 0.96467 0.92951 0.89047 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.13 71.98 0.66 -2.62 16 2 C 0.15 3.83 2.12 44.99 0.10 3.92 16 3 H 0.07 2.03 7.65 -2.39 -0.02 2.02 16 4 N -0.69 -16.41 4.36 -446.06 -1.94 -18.35 16 5 C 0.60 16.74 6.97 86.59 0.60 17.35 16 6 O -0.56 -19.39 16.80 -4.15 -0.07 -19.46 16 7 C -0.03 -0.87 6.71 40.70 0.27 -0.60 16 8 C -0.20 -4.66 7.02 -19.54 -0.14 -4.80 16 9 C -0.01 -0.19 8.14 43.26 0.35 0.17 16 10 N -0.29 -7.88 11.91 -46.79 -0.56 -8.44 16 11 N -0.28 -7.16 3.75 -356.23 -1.34 -8.50 16 12 C 0.08 1.64 11.22 127.77 1.43 3.08 16 13 C -0.03 -0.36 6.79 30.59 0.21 -0.15 16 14 C -0.10 -1.05 7.06 31.55 0.22 -0.83 16 15 C -0.05 -0.74 6.76 30.38 0.21 -0.53 16 16 C -0.07 -2.06 1.79 -10.77 -0.02 -2.08 16 17 C -0.12 -4.11 5.22 30.67 0.16 -3.95 16 18 C 0.18 8.31 5.26 86.36 0.45 8.77 16 19 N -0.61 -29.88 2.99 -699.09 -2.09 -31.97 16 20 C -0.26 -14.15 9.58 84.04 0.81 -13.35 16 21 H 0.06 3.35 7.86 -2.91 -0.02 3.32 16 22 C -0.05 -2.75 5.03 84.86 0.43 -2.33 16 23 N -0.93 -54.59 11.06 21.65 0.24 -54.35 16 24 Si 0.96 44.65 29.57 68.60 2.03 46.68 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C 0.14 5.46 6.52 86.36 0.56 6.03 16 29 C -0.11 -3.41 5.04 30.67 0.15 -3.25 16 30 H 0.05 1.15 8.12 -2.38 -0.02 1.13 16 31 H 0.08 1.57 6.40 -2.39 -0.02 1.55 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 8.61 8.37 -92.71 -0.78 7.84 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.87 7.66 -2.39 -0.02 1.85 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.92 7.41 -2.39 -0.02 1.90 16 46 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.05 2.68 6.09 -2.39 -0.01 2.66 16 48 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 49 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 51 H 0.09 2.13 6.36 -2.39 -0.02 2.11 16 52 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.84 408.24 2.87 -69.97 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.14 Total: 19.61 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.46 Total: 4.81 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.68 Total: -121.61 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.07 Total: -19.46 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.84 2.87 -69.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997392467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.383 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds