Wall clock time and date at job start Wed Apr 1 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.50699 * 109.47094 * 120.00100 * 2 1 3 5 5 N 1.32161 * 120.53905 * 288.39025 * 4 2 1 6 6 C 1.31850 * 120.97405 * 179.97438 * 5 4 2 7 7 N 1.31888 * 122.09151 * 359.97438 * 6 5 4 8 8 C 1.32134 * 120.96716 * 0.02562 * 7 6 5 9 9 C 1.39929 * 120.53824 * 108.36960 * 4 2 1 10 10 C 1.47829 * 120.94037 * 0.04417 * 9 4 2 11 11 O 1.21557 * 119.99566 * 323.06423 * 10 9 4 12 12 N 1.34773 * 120.00279 * 143.06041 * 10 9 4 13 13 C 1.46503 * 120.00214 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46826 * 35.00475 * 13 12 10 15 15 C 1.53002 * 109.47227 * 275.00233 * 13 12 10 16 16 C 1.52995 * 109.47100 * 155.00340 * 13 12 10 17 17 C 1.53045 * 109.46087 * 300.06930 * 16 13 12 18 18 C 1.53189 * 109.31118 * 178.61645 * 17 16 13 19 19 N 1.46919 * 108.77925 * 54.63639 * 18 17 16 20 20 C 1.36940 * 120.63552 * 126.41051 * 19 18 17 21 21 H 1.07996 * 120.00004 * 211.32304 * 20 19 18 22 22 C 1.38812 * 119.99872 * 31.32409 * 20 19 18 23 23 N 1.31616 * 119.99788 * 14.53315 * 22 20 19 24 24 Si 1.86796 * 120.00118 * 194.53454 * 22 20 19 25 25 H 1.48500 * 109.47316 * 89.99948 * 24 22 20 26 26 H 1.48497 * 109.47206 * 210.00035 * 24 22 20 27 27 H 1.48495 * 109.47183 * 329.99903 * 24 22 20 28 28 C 1.46932 * 118.73717 * 306.38877 * 19 18 17 29 29 C 1.53042 * 109.45902 * 180.02562 * 16 13 12 30 30 H 1.09004 * 109.46557 * 300.00237 * 1 2 3 31 31 H 1.08998 * 109.47092 * 59.99738 * 1 2 3 32 32 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47214 * 240.00051 * 2 1 3 34 34 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47015 * 300.00436 * 3 2 1 36 36 H 1.08999 * 109.46929 * 59.99876 * 3 2 1 37 37 H 1.07993 * 118.95590 * 179.71704 * 6 5 4 38 38 H 1.08001 * 120.53647 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00026 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.47149 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46981 * 300.00511 * 15 13 12 42 42 H 1.09002 * 109.46823 * 59.99901 * 15 13 12 43 43 H 1.09003 * 109.46524 * 60.02804 * 16 13 12 44 44 H 1.08999 * 109.49267 * 298.56447 * 17 16 13 45 45 H 1.08998 * 109.49796 * 58.66293 * 17 16 13 46 46 H 1.09003 * 109.58708 * 294.84345 * 18 17 16 47 47 H 1.09004 * 109.58588 * 174.42050 * 18 17 16 48 48 H 0.97002 * 120.00084 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58417 * 293.82090 * 28 19 18 50 50 H 1.09003 * 109.58634 * 173.39597 * 28 19 18 51 51 H 1.08995 * 109.49895 * 301.33698 * 29 16 13 52 52 H 1.09001 * 109.49582 * 61.43337 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.9176 -0.1514 2.4225 6 6 2.3537 -0.7655 3.5047 7 7 2.9199 -1.9556 3.4550 8 6 3.0750 -2.5872 2.3048 9 6 2.6274 -1.9728 1.1294 10 6 2.7790 -2.6390 -0.1816 11 8 1.9096 -2.5277 -1.0238 12 7 3.8809 -3.3695 -0.4429 13 6 4.0308 -4.0301 -1.7419 14 1 3.5906 -3.4062 -2.5197 15 6 3.3192 -5.3842 -1.7106 16 6 5.5169 -4.2417 -2.0380 17 6 6.2288 -2.8872 -2.0676 18 6 7.7222 -3.1055 -2.3300 19 7 7.8760 -3.8949 -3.5595 20 6 8.6715 -3.4481 -4.5807 21 1 8.4268 -3.6946 -5.6032 22 6 9.7924 -2.6784 -4.3014 23 7 10.2563 -2.6135 -3.0714 24 14 10.6424 -1.7348 -5.6712 25 1 10.0460 -0.3794 -5.7827 26 1 12.0905 -1.6147 -5.3649 27 1 10.4665 -2.4601 -6.9550 28 6 7.1603 -5.1731 -3.6724 29 6 5.6732 -4.9312 -3.3953 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.2475 -0.2767 4.4618 38 1 3.5400 -3.5614 2.2720 39 1 4.5745 -3.4586 0.2293 40 1 3.4304 -5.8755 -2.6772 41 1 3.7594 -6.0081 -0.9327 42 1 2.2605 -5.2335 -1.4996 43 1 5.9569 -4.8660 -1.2604 44 1 5.8061 -2.2714 -2.8615 45 1 6.0973 -2.3861 -1.1086 46 1 8.1655 -3.6438 -1.4922 47 1 8.2167 -2.1416 -2.4504 48 1 11.0393 -2.0753 -2.8761 49 1 7.5579 -5.8800 -2.9442 50 1 7.2841 -5.5735 -4.6787 51 1 5.1461 -5.8852 -3.3816 52 1 5.2558 -4.2957 -4.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997425790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:16 Heat of formation + Delta-G solvation = 13.099183 kcal Electronic energy + Delta-G solvation = -31352.473540 eV Core-core repulsion = 27351.913446 eV Total energy + Delta-G solvation = -4000.560095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.67614 -39.79227 -38.01790 -36.38509 -35.31822 -33.56163 -32.94720 -32.04206 -30.77256 -30.26989 -28.83138 -27.30746 -25.77610 -25.35890 -25.08435 -23.17678 -22.02720 -21.15583 -21.11472 -20.53675 -19.25278 -18.16775 -17.83244 -16.98977 -16.72093 -16.21980 -15.35341 -14.98440 -14.92585 -14.63518 -14.39509 -14.28834 -14.10513 -13.79713 -13.55504 -13.43513 -13.35690 -13.29483 -12.98184 -12.43228 -12.34576 -12.29768 -11.95773 -11.75961 -11.74359 -11.59116 -11.50741 -11.26330 -11.10966 -10.94494 -10.83430 -10.73516 -10.48240 -10.25749 -10.22290 -10.01919 -9.94009 -9.86785 -9.58453 -9.55262 -9.50250 -9.05007 -8.49509 -6.64066 -5.80962 -3.27064 0.20399 0.68087 2.51591 2.95079 3.36114 3.41617 3.43168 3.44067 3.65052 3.74457 3.96495 4.39761 4.47747 4.54715 4.83214 4.86674 4.95481 4.96300 5.11027 5.14421 5.26371 5.36522 5.42756 5.45545 5.51187 5.57934 5.66995 5.67655 5.71153 5.75844 5.82450 5.91015 5.94896 6.03684 6.05048 6.07132 6.16495 6.21786 6.27710 6.36310 6.51839 6.56002 6.57557 6.64485 6.73628 6.80583 6.96559 7.30131 7.36018 7.61035 7.67254 7.78357 7.99292 8.45594 9.20426 9.82699 10.41066 11.27383 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002694 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.941041 B =10390.531581 C =11024.040708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.141 4.141 4 C 0.239 3.761 5 N -0.516 5.516 6 C 0.312 3.688 7 N -0.525 5.525 8 C 0.182 3.818 9 C -0.238 4.238 10 C 0.568 3.432 11 O -0.525 6.525 12 N -0.709 5.709 13 C 0.144 3.856 14 H 0.089 0.911 15 C -0.163 4.163 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.174 3.826 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.201 0.799 38 H 0.173 0.827 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.017 0.983 47 H 0.082 0.918 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.054 0.946 51 H 0.055 0.945 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.783 0.950 11.107 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 C -0.199 4.199 4 C 0.092 3.908 5 N -0.230 5.230 6 C 0.025 3.975 7 N -0.239 5.239 8 C 0.015 3.985 9 C -0.245 4.245 10 C 0.353 3.647 11 O -0.402 6.402 12 N -0.359 5.359 13 C 0.041 3.959 14 H 0.107 0.893 15 C -0.221 4.221 16 C -0.104 4.104 17 C -0.173 4.173 18 C 0.048 3.952 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.019 3.981 29 C -0.165 4.165 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.217 0.783 38 H 0.190 0.810 39 H 0.235 0.765 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.100 0.900 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.330 1.556 11.429 21.657 hybrid contribution 1.066 -0.008 -0.838 1.356 sum -17.264 1.548 10.591 20.313 Atomic orbital electron populations 1.21666 0.92667 1.02313 1.02231 1.20499 0.97432 0.96512 0.93546 1.21796 1.00976 0.94415 1.02703 1.21889 0.86196 0.88785 0.93934 1.68304 1.19496 1.36459 0.98691 1.25210 0.87406 0.87436 0.97466 1.68448 1.16242 1.10514 1.28649 1.23481 0.89746 0.98654 0.86573 1.21708 1.06979 0.99176 0.96649 1.17741 0.82535 0.78543 0.85893 1.90771 1.40910 1.61275 1.47238 1.46074 1.20819 1.50774 1.18214 1.21237 0.97112 0.93420 0.84148 0.89323 1.22214 1.00381 0.96800 1.02686 1.21341 0.91752 0.98570 0.98696 1.22233 1.00388 0.94961 0.99746 1.20706 0.89243 0.97485 0.87753 1.44008 1.53081 1.17404 1.16948 1.19169 1.02561 1.29525 0.87123 0.91869 1.25130 0.96068 1.01834 0.96377 1.70009 1.24181 1.41986 1.18519 0.86295 0.78588 0.80231 0.81680 1.21423 1.21734 1.20382 1.20903 0.89457 0.88956 0.98754 1.22083 0.99773 0.98985 0.95666 0.92318 0.91593 0.92356 0.87159 0.92848 0.91758 0.91448 0.78298 0.81004 0.76524 0.90926 0.92567 0.92629 0.91402 0.92646 0.93694 0.96521 0.90012 0.93661 0.96563 0.92773 0.92629 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.18 37.16 0.34 -0.96 16 2 C -0.06 -0.68 2.67 -91.77 -0.25 -0.92 16 3 C -0.14 -1.40 9.00 37.16 0.33 -1.07 16 4 C 0.24 2.76 5.57 -81.82 -0.46 2.30 16 5 N -0.52 -5.58 9.83 -10.48 -0.10 -5.68 16 6 C 0.31 2.91 12.27 -92.03 -1.13 1.78 16 7 N -0.53 -5.32 10.42 -14.24 -0.15 -5.47 16 8 C 0.18 1.75 10.64 -16.77 -0.18 1.57 16 9 C -0.24 -2.66 5.80 -104.69 -0.61 -3.27 16 10 C 0.57 7.02 6.97 -12.34 -0.09 6.94 16 11 O -0.52 -7.83 14.22 5.32 0.08 -7.75 16 12 N -0.71 -7.96 4.30 -54.76 -0.24 -8.19 16 13 C 0.14 1.82 2.16 -67.93 -0.15 1.67 16 14 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 15 C -0.16 -1.80 9.13 37.16 0.34 -1.46 16 16 C -0.08 -1.24 1.79 -90.58 -0.16 -1.40 16 17 C -0.13 -2.36 5.22 -26.61 -0.14 -2.50 16 18 C 0.17 3.96 5.27 -3.72 -0.02 3.94 16 19 N -0.59 -14.35 2.98 -172.32 -0.51 -14.86 16 20 C -0.25 -6.86 9.56 -15.06 -0.14 -7.01 16 21 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 22 C 0.00 0.13 4.95 -17.43 -0.09 0.05 16 23 N -0.90 -25.86 11.29 55.49 0.63 -25.23 16 24 Si 0.90 21.52 29.58 -169.99 -5.03 16.50 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 29 C -0.13 -1.98 5.04 -26.61 -0.13 -2.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 1.42 5.41 -51.93 -0.28 1.14 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 37 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.17 1.18 7.79 -52.49 -0.41 0.77 16 39 H 0.40 3.81 7.74 -40.82 -0.32 3.49 16 40 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.71 7.40 -51.93 -0.38 0.33 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 2.13 6.24 -51.93 -0.32 1.81 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 51 H 0.06 0.74 6.36 -51.93 -0.33 0.40 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -31.23 408.36 -10.35 -41.58 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.64 Total: 2.52 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.54 Total: 0.44 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.37 Total: -59.44 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.23 -10.35 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997425790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.677 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds