Wall clock time and date at job start Wed Apr 1 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.50699 * 109.47094 * 120.00100 * 2 1 3 5 5 N 1.32161 * 120.53905 * 288.39025 * 4 2 1 6 6 C 1.31850 * 120.97405 * 179.97438 * 5 4 2 7 7 N 1.31888 * 122.09151 * 359.97438 * 6 5 4 8 8 C 1.32134 * 120.96716 * 0.02562 * 7 6 5 9 9 C 1.39929 * 120.53824 * 108.36960 * 4 2 1 10 10 C 1.47829 * 120.94037 * 0.04417 * 9 4 2 11 11 O 1.21557 * 119.99566 * 323.06423 * 10 9 4 12 12 N 1.34773 * 120.00279 * 143.06041 * 10 9 4 13 13 C 1.46503 * 120.00214 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46826 * 35.00475 * 13 12 10 15 15 C 1.53002 * 109.47227 * 275.00233 * 13 12 10 16 16 C 1.52995 * 109.47100 * 155.00340 * 13 12 10 17 17 C 1.53045 * 109.46087 * 300.06930 * 16 13 12 18 18 C 1.53189 * 109.31118 * 178.61645 * 17 16 13 19 19 N 1.46919 * 108.77925 * 54.63639 * 18 17 16 20 20 C 1.36940 * 120.63552 * 126.41051 * 19 18 17 21 21 H 1.07996 * 120.00004 * 211.32304 * 20 19 18 22 22 C 1.38812 * 119.99872 * 31.32409 * 20 19 18 23 23 N 1.31616 * 119.99788 * 14.53315 * 22 20 19 24 24 Si 1.86796 * 120.00118 * 194.53454 * 22 20 19 25 25 H 1.48500 * 109.47316 * 89.99948 * 24 22 20 26 26 H 1.48497 * 109.47206 * 210.00035 * 24 22 20 27 27 H 1.48495 * 109.47183 * 329.99903 * 24 22 20 28 28 C 1.46932 * 118.73717 * 306.38877 * 19 18 17 29 29 C 1.53042 * 109.45902 * 180.02562 * 16 13 12 30 30 H 1.09004 * 109.46557 * 300.00237 * 1 2 3 31 31 H 1.08998 * 109.47092 * 59.99738 * 1 2 3 32 32 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47214 * 240.00051 * 2 1 3 34 34 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47015 * 300.00436 * 3 2 1 36 36 H 1.08999 * 109.46929 * 59.99876 * 3 2 1 37 37 H 1.07993 * 118.95590 * 179.71704 * 6 5 4 38 38 H 1.08001 * 120.53647 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00026 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.47149 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46981 * 300.00511 * 15 13 12 42 42 H 1.09002 * 109.46823 * 59.99901 * 15 13 12 43 43 H 1.09003 * 109.46524 * 60.02804 * 16 13 12 44 44 H 1.08999 * 109.49267 * 298.56447 * 17 16 13 45 45 H 1.08998 * 109.49796 * 58.66293 * 17 16 13 46 46 H 1.09003 * 109.58708 * 294.84345 * 18 17 16 47 47 H 1.09004 * 109.58588 * 174.42050 * 18 17 16 48 48 H 0.97002 * 120.00084 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58417 * 293.82090 * 28 19 18 50 50 H 1.09003 * 109.58634 * 173.39597 * 28 19 18 51 51 H 1.08995 * 109.49895 * 301.33698 * 29 16 13 52 52 H 1.09001 * 109.49582 * 61.43337 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.9176 -0.1514 2.4225 6 6 2.3537 -0.7655 3.5047 7 7 2.9199 -1.9556 3.4550 8 6 3.0750 -2.5872 2.3048 9 6 2.6274 -1.9728 1.1294 10 6 2.7790 -2.6390 -0.1816 11 8 1.9096 -2.5277 -1.0238 12 7 3.8809 -3.3695 -0.4429 13 6 4.0308 -4.0301 -1.7419 14 1 3.5906 -3.4062 -2.5197 15 6 3.3192 -5.3842 -1.7106 16 6 5.5169 -4.2417 -2.0380 17 6 6.2288 -2.8872 -2.0676 18 6 7.7222 -3.1055 -2.3300 19 7 7.8760 -3.8949 -3.5595 20 6 8.6715 -3.4481 -4.5807 21 1 8.4268 -3.6946 -5.6032 22 6 9.7924 -2.6784 -4.3014 23 7 10.2563 -2.6135 -3.0714 24 14 10.6424 -1.7348 -5.6712 25 1 10.0460 -0.3794 -5.7827 26 1 12.0905 -1.6147 -5.3649 27 1 10.4665 -2.4601 -6.9550 28 6 7.1603 -5.1731 -3.6724 29 6 5.6732 -4.9312 -3.3953 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.2475 -0.2767 4.4618 38 1 3.5400 -3.5614 2.2720 39 1 4.5745 -3.4586 0.2293 40 1 3.4304 -5.8755 -2.6772 41 1 3.7594 -6.0081 -0.9327 42 1 2.2605 -5.2335 -1.4996 43 1 5.9569 -4.8660 -1.2604 44 1 5.8061 -2.2714 -2.8615 45 1 6.0973 -2.3861 -1.1086 46 1 8.1655 -3.6438 -1.4922 47 1 8.2167 -2.1416 -2.4504 48 1 11.0393 -2.0753 -2.8761 49 1 7.5579 -5.8800 -2.9442 50 1 7.2841 -5.5735 -4.6787 51 1 5.1461 -5.8852 -3.3816 52 1 5.2558 -4.2957 -4.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997425790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:15 Heat of formation + Delta-G solvation = -4.341497 kcal Electronic energy + Delta-G solvation = -31353.229825 eV Core-core repulsion = 27351.913446 eV Total energy + Delta-G solvation = -4001.316379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.48186 -40.80677 -39.37197 -37.30454 -36.62126 -34.68531 -34.13869 -33.14760 -32.12198 -31.81058 -30.18253 -28.10383 -27.18113 -26.42984 -25.96712 -24.59403 -23.58495 -22.41610 -21.93062 -21.57976 -20.75911 -19.02509 -18.87699 -18.48231 -17.76415 -17.21777 -16.84644 -16.21528 -15.91096 -15.74948 -15.52130 -15.33072 -15.28415 -15.06638 -14.87739 -14.72125 -14.56163 -14.28353 -14.08601 -13.97479 -13.57133 -13.19536 -13.10402 -13.06038 -12.80061 -12.73776 -12.65414 -12.54112 -12.40325 -12.32764 -12.17548 -12.01188 -11.89524 -11.81427 -11.62863 -11.46306 -11.22319 -11.09092 -10.83771 -10.72757 -10.54804 -10.36271 -10.07045 -8.61390 -7.87417 -5.36014 -0.58064 -0.10155 1.45008 1.46531 1.54908 1.59052 2.02424 2.50227 2.63556 2.88371 3.07828 3.21382 3.27259 3.54342 3.70223 3.73298 3.78507 3.98569 4.05757 4.06802 4.14144 4.16750 4.39899 4.44444 4.50029 4.57213 4.60946 4.62826 4.75013 4.76093 4.84070 4.87022 4.90744 4.93303 5.01195 5.05182 5.07624 5.12788 5.17557 5.22683 5.26608 5.31207 5.36102 5.41282 5.45879 5.47421 5.56580 5.66887 5.78276 5.79117 6.41054 6.42414 6.91458 7.07240 7.16968 7.88479 8.40084 9.17986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002694 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.941041 B =10390.531581 C =11024.040708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C -0.135 4.135 4 C 0.227 3.773 5 N -0.527 5.527 6 C 0.312 3.688 7 N -0.535 5.535 8 C 0.190 3.810 9 C -0.252 4.252 10 C 0.572 3.428 11 O -0.553 6.553 12 N -0.702 5.702 13 C 0.156 3.844 14 H 0.069 0.931 15 C -0.156 4.156 16 C -0.074 4.074 17 C -0.119 4.119 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.062 0.938 22 C -0.048 4.048 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.140 3.860 29 C -0.115 4.115 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.233 0.767 38 H 0.200 0.800 39 H 0.411 0.589 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.001 0.999 47 H 0.041 0.959 48 H 0.249 0.751 49 H 0.018 0.982 50 H 0.050 0.950 51 H 0.092 0.908 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 0.234 12.016 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.193 4.193 4 C 0.081 3.919 5 N -0.240 5.240 6 C 0.026 3.974 7 N -0.248 5.248 8 C 0.023 3.977 9 C -0.260 4.260 10 C 0.358 3.642 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.052 3.948 14 H 0.087 0.913 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.158 4.158 18 C 0.055 3.945 19 N -0.336 5.336 20 C -0.394 4.394 21 H 0.080 0.920 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.221 1.221 27 H -0.193 1.193 28 C 0.015 3.985 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.217 0.783 39 H 0.247 0.753 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.019 0.981 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.036 0.964 50 H 0.069 0.931 51 H 0.110 0.890 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.655 0.819 12.345 23.225 hybrid contribution 1.475 0.193 -1.086 1.842 sum -18.180 1.012 11.259 21.408 Atomic orbital electron populations 1.21607 0.91919 1.01676 1.02986 1.20466 0.98062 0.96818 0.92854 1.21749 1.00251 0.93916 1.03377 1.22008 0.86369 0.89183 0.94383 1.68355 1.20171 1.36758 0.98740 1.25913 0.86019 0.87221 0.98238 1.68556 1.16711 1.10919 1.28662 1.23907 0.88662 0.99335 0.85804 1.21635 1.08379 0.99414 0.96564 1.17862 0.82202 0.78149 0.86014 1.90759 1.41996 1.62242 1.48278 1.45959 1.20909 1.50410 1.17946 1.20976 0.95252 0.94327 0.84276 0.91305 1.22155 0.99854 0.95661 1.03720 1.21214 0.92921 0.96524 0.98612 1.21999 0.96794 0.96971 1.00025 1.20507 0.92101 0.95053 0.86823 1.44294 1.53307 1.19308 1.16649 1.19477 1.02708 1.29267 0.87940 0.92030 1.25838 0.97027 1.03080 0.98400 1.70152 1.24586 1.42918 1.20224 0.85332 0.77132 0.78833 0.79560 1.21408 1.22052 1.19304 1.21085 0.91594 0.87107 0.98728 1.21953 0.96749 1.00807 0.95865 0.91770 0.90574 0.93620 0.89141 0.93850 0.90746 0.91065 0.75126 0.78345 0.75283 0.90220 0.90876 0.93126 0.90107 0.94276 0.91838 0.98137 0.94026 0.94197 0.96396 0.93099 0.88978 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.18 71.98 0.66 -1.75 16 2 C -0.06 -1.38 2.67 -11.54 -0.03 -1.42 16 3 C -0.14 -2.63 9.00 71.98 0.65 -1.98 16 4 C 0.23 5.08 5.57 42.92 0.24 5.32 16 5 N -0.53 -10.67 9.83 -187.07 -1.84 -12.50 16 6 C 0.31 5.19 12.27 180.84 2.22 7.41 16 7 N -0.53 -9.65 10.42 -198.98 -2.07 -11.72 16 8 C 0.19 3.25 10.64 85.07 0.91 4.15 16 9 C -0.25 -5.35 5.80 -19.91 -0.12 -5.47 16 10 C 0.57 13.55 6.97 86.78 0.61 14.16 16 11 O -0.55 -16.36 14.22 -3.90 -0.06 -16.41 16 12 N -0.70 -14.44 4.30 -445.42 -1.92 -16.36 16 13 C 0.16 3.61 2.16 44.99 0.10 3.70 16 14 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 15 C -0.16 -2.96 9.13 71.98 0.66 -2.31 16 16 C -0.07 -2.01 1.79 -10.77 -0.02 -2.03 16 17 C -0.12 -4.14 5.22 30.67 0.16 -3.98 16 18 C 0.18 8.42 5.27 86.36 0.45 8.87 16 19 N -0.61 -30.04 2.98 -699.08 -2.08 -32.12 16 20 C -0.26 -14.46 9.56 84.03 0.80 -13.66 16 21 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 22 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 23 N -0.93 -54.95 11.29 21.65 0.24 -54.71 16 24 Si 0.96 44.98 29.58 68.60 2.03 47.01 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.14 5.47 6.52 86.36 0.56 6.03 16 29 C -0.11 -3.38 5.04 30.67 0.15 -3.23 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 2.37 5.41 -2.39 -0.01 2.36 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 1.31 7.89 -2.39 -0.02 1.29 16 37 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.20 2.12 7.79 -2.91 -0.02 2.10 16 39 H 0.41 6.77 7.74 -92.71 -0.72 6.06 16 40 H 0.08 1.41 6.40 -2.39 -0.02 1.40 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.96 7.40 -2.39 -0.02 1.94 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.04 2.25 6.24 -2.39 -0.01 2.24 16 48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 51 H 0.09 2.10 6.36 -2.39 -0.02 2.08 16 52 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.44 408.36 2.93 -66.51 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.20 Total: 18.72 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 8.42 Total: 11.58 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -7.67 Total: -127.41 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.06 Total: -16.41 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.44 2.93 -66.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997425790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.173 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds