Wall clock time and date at job start Wed Apr 1 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47104 * 2 1 4 4 N 1.46496 * 109.47262 * 120.00051 * 2 1 3 5 5 C 1.34784 * 119.99891 * 275.00125 * 4 2 1 6 6 O 1.21279 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99946 * 179.72470 * 5 4 2 8 8 H 1.08999 * 109.42721 * 59.88052 * 7 5 4 9 9 C 1.53027 * 109.42604 * 179.71921 * 7 5 4 10 10 C 1.53385 * 109.72537 * 191.80720 * 9 7 5 11 11 C 1.50884 * 108.19385 * 309.46676 * 10 9 7 12 12 C 1.34576 * 128.32437 * 196.72938 * 11 10 9 13 13 N 1.35197 * 107.61481 * 179.71645 * 12 11 10 14 14 H 0.97005 * 126.00174 * 180.02562 * 13 12 11 15 15 N 1.40317 * 107.99521 * 0.04177 * 13 12 11 16 16 C 1.30120 * 108.12084 * 0.03551 * 15 13 12 17 17 C 1.50956 * 128.28547 * 179.85360 * 16 15 13 18 18 C 1.53004 * 109.47237 * 239.99873 * 2 1 3 19 19 C 1.53042 * 109.45931 * 180.02562 * 18 2 1 20 20 C 1.53191 * 109.31026 * 178.60434 * 19 18 2 21 21 N 1.46928 * 108.76999 * 54.65441 * 20 19 18 22 22 C 1.36935 * 120.62708 * 126.40231 * 21 20 19 23 23 H 1.07991 * 120.00455 * 332.61064 * 22 21 20 24 24 C 1.38818 * 119.99335 * 152.60767 * 22 21 20 25 25 N 1.31617 * 119.99750 * 159.36083 * 24 22 21 26 26 Si 1.86797 * 120.00406 * 339.36592 * 24 22 21 27 27 H 1.48499 * 109.47314 * 92.90671 * 26 24 22 28 28 H 1.48496 * 109.47352 * 212.91103 * 26 24 22 29 29 H 1.48499 * 109.46824 * 332.90826 * 26 24 22 30 30 C 1.46924 * 118.73675 * 306.38898 * 21 20 19 31 31 C 1.53044 * 109.45780 * 59.97271 * 18 2 1 32 32 H 1.08992 * 109.47117 * 300.00300 * 1 2 3 33 33 H 1.09007 * 109.47058 * 60.00234 * 1 2 3 34 34 H 1.08998 * 109.46813 * 179.97438 * 1 2 3 35 35 H 0.96998 * 119.99998 * 94.99787 * 4 2 1 36 36 H 1.09000 * 109.42529 * 311.88416 * 9 7 5 37 37 H 1.08998 * 109.42938 * 71.73146 * 9 7 5 38 38 H 1.08996 * 109.72554 * 189.79009 * 10 9 7 39 39 H 1.08999 * 109.74364 * 69.16089 * 10 9 7 40 40 H 1.07993 * 126.18991 * 359.68338 * 12 11 10 41 41 H 1.08997 * 109.71349 * 76.98350 * 17 16 15 42 42 H 1.09007 * 109.71291 * 316.34431 * 17 16 15 43 43 H 1.08995 * 109.46145 * 300.00080 * 18 2 1 44 44 H 1.09003 * 109.49777 * 298.56735 * 19 18 2 45 45 H 1.08995 * 109.49737 * 58.66497 * 19 18 2 46 46 H 1.09000 * 109.59913 * 294.86809 * 20 19 18 47 47 H 1.09003 * 109.58419 * 174.43887 * 20 19 18 48 48 H 0.96997 * 120.00176 * 180.02562 * 25 24 22 49 49 H 1.09000 * 109.58298 * 293.81386 * 30 21 20 50 50 H 1.08997 * 109.58392 * 173.39329 * 30 21 20 51 51 H 1.08998 * 109.49699 * 301.33446 * 31 18 2 52 52 H 1.09000 * 109.49527 * 61.43391 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4114 7 6 2.6435 -0.7301 3.5891 8 1 3.6407 -1.1279 3.4008 9 6 2.7025 0.2561 4.7577 10 6 3.4750 -0.3705 5.9253 11 6 2.8961 -1.7378 6.1935 12 6 3.0419 -2.5056 7.2891 13 7 2.3405 -3.6437 7.0875 14 1 2.2629 -4.3835 7.7100 15 7 1.7448 -3.5668 5.8194 16 6 2.0776 -2.4284 5.2842 17 6 1.6908 -1.8824 3.9310 18 6 2.0400 -0.7213 -1.2493 19 6 3.5705 -0.7217 -1.2486 20 6 4.0773 -1.4748 -2.4826 21 7 3.4748 -0.8770 -3.6819 22 6 4.2608 -0.4515 -4.7193 23 1 5.2760 -0.1340 -4.5328 24 6 3.7525 -0.4284 -6.0109 25 7 4.3157 0.3314 -6.9262 26 14 2.2692 -1.4755 -6.4499 27 1 1.0303 -0.6747 -6.2801 28 1 2.3797 -1.9233 -7.8614 29 1 2.2186 -2.6610 -5.5570 30 6 2.0130 -0.7447 -3.7469 31 6 1.5292 0.0000 -2.4987 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2490 -1.6317 1.1526 36 1 3.2063 1.1680 4.4374 37 1 1.6896 0.4966 5.0807 38 1 3.3703 0.2536 6.8128 39 1 4.5288 -0.4623 5.6625 40 1 3.6159 -2.2577 8.1696 41 1 0.6652 -1.5148 3.9624 42 1 1.7780 -2.6670 3.1793 43 1 1.6766 -1.7489 -1.2491 44 1 3.9345 0.3054 -1.2740 45 1 3.9337 -1.2147 -0.3470 46 1 3.7904 -2.5241 -2.4139 47 1 5.1628 -1.3937 -2.5398 48 1 3.9604 0.3479 -7.8286 49 1 1.5578 -1.7345 -3.7814 50 1 1.7364 -0.1818 -4.6384 51 1 0.4394 0.0206 -2.4868 52 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997431630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:26 Heat of formation + Delta-G solvation = 40.973132 kcal Electronic energy + Delta-G solvation = -30929.510522 eV Core-core repulsion = 26930.159133 eV Total energy + Delta-G solvation = -3999.351390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.85652 -40.17522 -38.34340 -36.46250 -35.43159 -33.04414 -32.48067 -31.61875 -30.83050 -30.35407 -29.25748 -28.74622 -25.65662 -25.22931 -23.34697 -22.67089 -22.20564 -21.40841 -20.61124 -20.41259 -19.43082 -19.12168 -17.97104 -17.22490 -16.68927 -16.18688 -15.70918 -15.29487 -15.11256 -14.74734 -14.20194 -14.16536 -14.10843 -13.90750 -13.78790 -13.62809 -13.44702 -13.18571 -12.98614 -12.94122 -12.62479 -12.40710 -12.18372 -11.97622 -11.83664 -11.71693 -11.49084 -11.32758 -11.24020 -11.15290 -10.79557 -10.61277 -10.47108 -10.43437 -10.09671 -9.89336 -9.78856 -9.76835 -9.61720 -9.38059 -9.00271 -8.79215 -8.59226 -6.94562 -5.92583 -3.27842 1.52712 2.35094 2.42131 2.64016 3.13530 3.33228 3.49517 3.52353 4.03316 4.31017 4.51473 4.54872 4.55181 4.73119 4.83546 4.94195 4.98792 5.01868 5.10454 5.13199 5.19512 5.24431 5.25211 5.42840 5.44335 5.50406 5.56320 5.60273 5.66249 5.75301 5.81016 5.85316 5.89069 5.90795 6.04213 6.07779 6.10323 6.17976 6.23639 6.28967 6.34046 6.43405 6.54377 6.57949 6.67568 6.69453 6.74383 6.90499 7.00757 7.30004 7.49963 7.99414 8.20899 8.35460 8.97268 9.74885 10.13160 11.23547 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.002138 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.606603 B =13092.252481 C =13245.500224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.088 0.912 4 N -0.720 5.720 5 C 0.519 3.481 6 O -0.538 6.538 7 C -0.103 4.103 8 H 0.102 0.898 9 C -0.098 4.098 10 C -0.042 4.042 11 C -0.235 4.235 12 C 0.060 3.940 13 N -0.485 5.485 14 H 0.439 0.561 15 N -0.286 5.286 16 C 0.085 3.915 17 C -0.028 4.028 18 C -0.085 4.085 19 C -0.127 4.127 20 C 0.149 3.851 21 N -0.606 5.606 22 C -0.258 4.258 23 H 0.084 0.916 24 C 0.021 3.979 25 N -0.909 5.909 26 Si 0.884 3.116 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 C 0.126 3.874 31 C -0.127 4.127 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.176 0.824 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.061 0.939 48 H 0.262 0.738 49 H 0.023 0.977 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -5.811 29.802 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.106 0.894 4 N -0.371 5.371 5 C 0.305 3.695 6 O -0.415 6.415 7 C -0.125 4.125 8 H 0.120 0.880 9 C -0.136 4.136 10 C -0.080 4.080 11 C -0.246 4.246 12 C -0.086 4.086 13 N -0.194 5.194 14 H 0.283 0.717 15 N -0.109 5.109 16 C -0.083 4.083 17 C -0.068 4.068 18 C -0.104 4.104 19 C -0.166 4.166 20 C 0.023 3.977 21 N -0.330 5.330 22 C -0.386 4.386 23 H 0.102 0.898 24 C -0.177 4.177 25 N -0.552 5.552 26 Si 0.714 3.286 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.196 1.196 30 C 0.001 3.999 31 C -0.167 4.167 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.193 0.807 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.526 -5.977 29.499 30.601 hybrid contribution -0.299 -0.832 0.152 0.897 sum -5.825 -6.809 29.651 30.976 Atomic orbital electron populations 1.22209 0.95579 1.01911 1.02416 1.21117 0.93670 0.97665 0.83512 0.89414 1.46160 1.67063 1.14025 1.09816 1.20446 0.77494 0.87270 0.84323 1.90702 1.49739 1.15981 1.85052 1.21351 1.00847 0.96372 0.93905 0.87997 1.21380 1.01787 0.97600 0.92831 1.20041 0.98793 0.90728 0.98422 1.20180 1.08504 1.00453 0.95462 1.22088 0.98268 0.87938 1.00300 1.46337 1.40808 1.17096 1.15135 0.71720 1.77032 1.20342 1.20225 0.93274 1.22184 0.97090 0.91968 0.97102 1.20021 0.99637 0.96351 0.90776 1.21329 0.96608 0.99259 0.93249 1.22039 0.94289 1.01785 0.98524 1.20916 0.97187 0.93766 0.85864 1.44356 1.00981 1.70588 1.17074 1.18923 0.97841 1.36919 0.84943 0.89793 1.25290 0.97997 0.98807 0.95644 1.69839 1.42917 1.38616 1.03857 0.86933 0.82868 0.82206 0.76550 1.21645 1.23258 1.19646 1.21325 0.85098 0.96988 0.96513 1.22089 0.99148 1.00440 0.95012 0.92564 0.91122 0.92677 0.76709 0.90085 0.91168 0.90801 0.90985 0.80673 0.89224 0.89350 0.91379 0.91863 0.92901 0.96198 0.92017 0.92818 0.95875 0.90959 0.92337 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.13 37.16 0.34 -1.56 16 2 C 0.14 1.82 2.16 -67.93 -0.15 1.67 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.72 -7.52 4.26 -53.81 -0.23 -7.75 16 5 C 0.52 5.87 7.10 -10.99 -0.08 5.79 16 6 O -0.54 -8.14 15.43 5.56 0.09 -8.06 16 7 C -0.10 -0.87 2.46 -91.57 -0.23 -1.10 16 8 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 9 C -0.10 -0.83 4.64 -26.52 -0.12 -0.95 16 10 C -0.04 -0.28 6.28 -27.59 -0.17 -0.45 16 11 C -0.23 -1.86 5.89 -104.98 -0.62 -2.48 16 12 C 0.06 0.36 11.95 -17.36 -0.21 0.16 16 13 N -0.49 -3.35 7.37 30.35 0.22 -3.12 16 14 H 0.44 1.61 8.96 -182.43 -1.64 -0.02 16 15 N -0.29 -2.92 12.68 33.75 0.43 -2.49 16 16 C 0.09 0.80 7.10 -82.35 -0.58 0.22 16 17 C -0.03 -0.23 5.43 -27.56 -0.15 -0.38 16 18 C -0.09 -1.21 1.79 -90.57 -0.16 -1.37 16 19 C -0.13 -1.96 5.22 -26.61 -0.14 -2.10 16 20 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 21 N -0.61 -14.20 2.77 -172.32 -0.48 -14.68 16 22 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 23 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 24 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 25 N -0.91 -28.00 13.97 55.49 0.78 -27.22 16 26 Si 0.88 22.41 24.34 -169.99 -4.14 18.27 16 27 H -0.29 -7.05 6.62 56.52 0.37 -6.67 16 28 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 29 H -0.27 -6.74 6.64 56.52 0.38 -6.37 16 30 C 0.13 2.69 4.20 -3.71 -0.02 2.68 16 31 C -0.13 -2.15 5.04 -26.61 -0.13 -2.28 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 3.33 8.04 -40.82 -0.33 3.00 16 36 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.18 0.43 8.06 -52.49 -0.42 0.00 16 41 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.67 7.41 -51.93 -0.38 0.29 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 50 H 0.07 1.71 4.50 -51.93 -0.23 1.48 16 51 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 52 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -35.01 395.07 -9.97 -44.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -9.90 Total: 0.29 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.68 Total: -6.17 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.72 Total: -55.26 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.01 -9.97 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997431630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds