Wall clock time and date at job start Wed Apr 1 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47104 * 2 1 4 4 N 1.46496 * 109.47262 * 120.00051 * 2 1 3 5 5 C 1.34784 * 119.99891 * 275.00125 * 4 2 1 6 6 O 1.21279 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99946 * 179.72470 * 5 4 2 8 8 H 1.08999 * 109.42721 * 59.88052 * 7 5 4 9 9 C 1.53027 * 109.42604 * 179.71921 * 7 5 4 10 10 C 1.53385 * 109.72537 * 191.80720 * 9 7 5 11 11 C 1.50884 * 108.19385 * 309.46676 * 10 9 7 12 12 C 1.34576 * 128.32437 * 196.72938 * 11 10 9 13 13 N 1.35197 * 107.61481 * 179.71645 * 12 11 10 14 14 H 0.97005 * 126.00174 * 180.02562 * 13 12 11 15 15 N 1.40317 * 107.99521 * 0.04177 * 13 12 11 16 16 C 1.30120 * 108.12084 * 0.03551 * 15 13 12 17 17 C 1.50956 * 128.28547 * 179.85360 * 16 15 13 18 18 C 1.53004 * 109.47237 * 239.99873 * 2 1 3 19 19 C 1.53042 * 109.45931 * 180.02562 * 18 2 1 20 20 C 1.53191 * 109.31026 * 178.60434 * 19 18 2 21 21 N 1.46928 * 108.76999 * 54.65441 * 20 19 18 22 22 C 1.36935 * 120.62708 * 126.40231 * 21 20 19 23 23 H 1.07991 * 120.00455 * 332.61064 * 22 21 20 24 24 C 1.38818 * 119.99335 * 152.60767 * 22 21 20 25 25 N 1.31617 * 119.99750 * 159.36083 * 24 22 21 26 26 Si 1.86797 * 120.00406 * 339.36592 * 24 22 21 27 27 H 1.48499 * 109.47314 * 92.90671 * 26 24 22 28 28 H 1.48496 * 109.47352 * 212.91103 * 26 24 22 29 29 H 1.48499 * 109.46824 * 332.90826 * 26 24 22 30 30 C 1.46924 * 118.73675 * 306.38898 * 21 20 19 31 31 C 1.53044 * 109.45780 * 59.97271 * 18 2 1 32 32 H 1.08992 * 109.47117 * 300.00300 * 1 2 3 33 33 H 1.09007 * 109.47058 * 60.00234 * 1 2 3 34 34 H 1.08998 * 109.46813 * 179.97438 * 1 2 3 35 35 H 0.96998 * 119.99998 * 94.99787 * 4 2 1 36 36 H 1.09000 * 109.42529 * 311.88416 * 9 7 5 37 37 H 1.08998 * 109.42938 * 71.73146 * 9 7 5 38 38 H 1.08996 * 109.72554 * 189.79009 * 10 9 7 39 39 H 1.08999 * 109.74364 * 69.16089 * 10 9 7 40 40 H 1.07993 * 126.18991 * 359.68338 * 12 11 10 41 41 H 1.08997 * 109.71349 * 76.98350 * 17 16 15 42 42 H 1.09007 * 109.71291 * 316.34431 * 17 16 15 43 43 H 1.08995 * 109.46145 * 300.00080 * 18 2 1 44 44 H 1.09003 * 109.49777 * 298.56735 * 19 18 2 45 45 H 1.08995 * 109.49737 * 58.66497 * 19 18 2 46 46 H 1.09000 * 109.59913 * 294.86809 * 20 19 18 47 47 H 1.09003 * 109.58419 * 174.43887 * 20 19 18 48 48 H 0.96997 * 120.00176 * 180.02562 * 25 24 22 49 49 H 1.09000 * 109.58298 * 293.81386 * 30 21 20 50 50 H 1.08997 * 109.58392 * 173.39329 * 30 21 20 51 51 H 1.08998 * 109.49699 * 301.33446 * 31 18 2 52 52 H 1.09000 * 109.49527 * 61.43391 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4114 7 6 2.6435 -0.7301 3.5891 8 1 3.6407 -1.1279 3.4008 9 6 2.7025 0.2561 4.7577 10 6 3.4750 -0.3705 5.9253 11 6 2.8961 -1.7378 6.1935 12 6 3.0419 -2.5056 7.2891 13 7 2.3405 -3.6437 7.0875 14 1 2.2629 -4.3835 7.7100 15 7 1.7448 -3.5668 5.8194 16 6 2.0776 -2.4284 5.2842 17 6 1.6908 -1.8824 3.9310 18 6 2.0400 -0.7213 -1.2493 19 6 3.5705 -0.7217 -1.2486 20 6 4.0773 -1.4748 -2.4826 21 7 3.4748 -0.8770 -3.6819 22 6 4.2608 -0.4515 -4.7193 23 1 5.2760 -0.1340 -4.5328 24 6 3.7525 -0.4284 -6.0109 25 7 4.3157 0.3314 -6.9262 26 14 2.2692 -1.4755 -6.4499 27 1 1.0303 -0.6747 -6.2801 28 1 2.3797 -1.9233 -7.8614 29 1 2.2186 -2.6610 -5.5570 30 6 2.0130 -0.7447 -3.7469 31 6 1.5292 0.0000 -2.4987 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2490 -1.6317 1.1526 36 1 3.2063 1.1680 4.4374 37 1 1.6896 0.4966 5.0807 38 1 3.3703 0.2536 6.8128 39 1 4.5288 -0.4623 5.6625 40 1 3.6159 -2.2577 8.1696 41 1 0.6652 -1.5148 3.9624 42 1 1.7780 -2.6670 3.1793 43 1 1.6766 -1.7489 -1.2491 44 1 3.9345 0.3054 -1.2740 45 1 3.9337 -1.2147 -0.3470 46 1 3.7904 -2.5241 -2.4139 47 1 5.1628 -1.3937 -2.5398 48 1 3.9604 0.3479 -7.8286 49 1 1.5578 -1.7345 -3.7814 50 1 1.7364 -0.1818 -4.6384 51 1 0.4394 0.0206 -2.4868 52 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997431630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:25 Heat of formation + Delta-G solvation = 16.989715 kcal Electronic energy + Delta-G solvation = -30930.550521 eV Core-core repulsion = 26930.159133 eV Total energy + Delta-G solvation = -4000.391389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.41328 -41.11979 -39.66470 -37.32312 -36.65468 -34.53742 -33.37327 -32.87965 -31.94253 -31.65925 -30.38954 -29.37167 -27.14165 -26.08953 -24.54930 -24.22400 -23.24396 -21.98323 -21.78199 -21.35647 -20.72406 -19.80538 -18.80350 -18.47468 -17.95473 -17.37526 -16.89029 -16.41314 -15.90506 -15.85031 -15.60339 -15.30803 -15.22771 -14.93548 -14.73116 -14.59519 -14.47975 -14.39780 -14.25295 -13.84225 -13.75501 -13.64721 -13.49146 -13.33652 -12.83730 -12.69841 -12.56386 -12.39518 -12.32781 -12.17451 -12.12658 -11.99090 -11.83000 -11.61791 -11.48207 -11.26926 -11.20347 -11.14311 -10.74977 -10.58763 -10.34819 -9.97945 -9.30481 -8.89343 -8.14821 -5.45768 1.01423 1.31554 1.42463 1.52100 1.67027 1.80098 2.04087 2.27185 2.43597 3.07919 3.39676 3.42966 3.68955 3.75409 3.87131 3.93938 3.97631 4.02327 4.14383 4.39034 4.40401 4.41904 4.43493 4.50648 4.51501 4.55250 4.61130 4.65476 4.70569 4.74604 4.85400 4.88885 4.90297 5.00696 5.03002 5.03549 5.09752 5.14131 5.17012 5.23592 5.27825 5.29511 5.31382 5.40907 5.41929 5.55742 5.67991 5.73993 5.89393 6.14470 6.52191 6.65683 6.75780 6.95552 7.35019 7.66280 8.06132 9.05343 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.002138 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.606603 B =13092.252481 C =13245.500224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.061 0.939 4 N -0.710 5.710 5 C 0.520 3.480 6 O -0.580 6.580 7 C -0.091 4.091 8 H 0.117 0.883 9 C -0.097 4.097 10 C -0.033 4.033 11 C -0.258 4.258 12 C 0.074 3.926 13 N -0.480 5.480 14 H 0.451 0.549 15 N -0.326 5.326 16 C 0.071 3.929 17 C -0.024 4.024 18 C -0.075 4.075 19 C -0.116 4.116 20 C 0.143 3.857 21 N -0.622 5.622 22 C -0.247 4.247 23 H 0.047 0.953 24 C -0.041 4.041 25 N -0.960 5.960 26 Si 0.951 3.049 27 H -0.274 1.274 28 H -0.314 1.314 29 H -0.257 1.257 30 C 0.120 3.880 31 C -0.121 4.121 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.215 0.785 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.260 0.740 49 H 0.038 0.962 50 H 0.045 0.955 51 H 0.087 0.913 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 -8.045 32.767 34.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.079 0.921 4 N -0.361 5.361 5 C 0.307 3.693 6 O -0.459 6.459 7 C -0.113 4.113 8 H 0.135 0.865 9 C -0.135 4.135 10 C -0.071 4.071 11 C -0.270 4.270 12 C -0.072 4.072 13 N -0.190 5.190 14 H 0.297 0.703 15 N -0.149 5.149 16 C -0.097 4.097 17 C -0.063 4.063 18 C -0.094 4.094 19 C -0.155 4.155 20 C 0.018 3.982 21 N -0.347 5.347 22 C -0.377 4.377 23 H 0.065 0.935 24 C -0.235 4.235 25 N -0.607 5.607 26 Si 0.780 3.220 27 H -0.201 1.201 28 H -0.243 1.243 29 H -0.181 1.181 30 C -0.005 4.005 31 C -0.160 4.160 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.231 0.769 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.057 0.943 45 H 0.106 0.894 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.105 0.895 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.763 -8.268 32.521 34.231 hybrid contribution 0.167 -0.104 -0.649 0.679 sum -6.596 -8.371 31.872 33.607 Atomic orbital electron populations 1.22157 0.94447 1.02972 1.02034 1.20818 0.94407 0.96220 0.83593 0.92090 1.46026 1.66563 1.14598 1.08944 1.20920 0.76549 0.86765 0.85053 1.90692 1.51561 1.17963 1.85696 1.21285 1.01484 0.96177 0.92329 0.86459 1.21344 1.01197 0.97329 0.93639 1.19989 0.98776 0.90303 0.98028 1.20414 1.09307 1.01178 0.96062 1.22685 0.96997 0.86802 1.00762 1.46403 1.40253 1.17862 1.14484 0.70263 1.76948 1.21958 1.21057 0.94950 1.22368 0.97536 0.92156 0.97640 1.19975 0.98985 0.96282 0.91063 1.21228 0.95397 1.00235 0.92549 1.21911 0.95340 1.00163 0.98095 1.21124 0.96582 0.95051 0.85444 1.44513 1.01820 1.71250 1.17127 1.18858 0.96943 1.35415 0.86452 0.93544 1.25966 1.01744 1.00181 0.95647 1.69983 1.45607 1.40815 1.04273 0.85834 0.79843 0.80678 0.75623 1.20088 1.24281 1.18118 1.21409 0.83777 0.97783 0.97531 1.21984 1.00840 0.98924 0.94264 0.93418 0.91112 0.90813 0.74989 0.91329 0.92531 0.89530 0.90072 0.76886 0.89933 0.88122 0.89053 0.94260 0.89418 0.94071 0.93300 0.93068 0.94370 0.93712 0.89485 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.13 71.98 0.66 -2.61 16 2 C 0.15 3.55 2.16 44.99 0.10 3.65 16 3 H 0.06 1.78 7.58 -2.38 -0.02 1.76 16 4 N -0.71 -13.00 4.26 -442.53 -1.89 -14.88 16 5 C 0.52 11.00 7.10 87.65 0.62 11.63 16 6 O -0.58 -17.40 15.43 -3.02 -0.05 -17.44 16 7 C -0.09 -1.38 2.46 -11.41 -0.03 -1.41 16 8 H 0.12 1.45 8.10 -2.39 -0.02 1.43 16 9 C -0.10 -1.53 4.64 30.73 0.14 -1.39 16 10 C -0.03 -0.37 6.28 30.04 0.19 -0.18 16 11 C -0.26 -3.47 5.89 -20.10 -0.12 -3.59 16 12 C 0.07 0.67 11.95 83.34 1.00 1.67 16 13 N -0.48 -5.48 7.37 -57.89 -0.43 -5.91 16 14 H 0.45 2.27 8.96 -213.17 -1.91 0.36 16 15 N -0.33 -6.08 12.68 -47.13 -0.60 -6.68 16 16 C 0.07 1.20 7.10 43.44 0.31 1.51 16 17 C -0.02 -0.34 5.43 30.05 0.16 -0.18 16 18 C -0.08 -1.90 1.79 -10.76 -0.02 -1.92 16 19 C -0.12 -3.33 5.22 30.67 0.16 -3.17 16 20 C 0.14 5.21 6.52 86.36 0.56 5.77 16 21 N -0.62 -28.86 2.77 -699.10 -1.94 -30.80 16 22 C -0.25 -14.17 10.04 84.04 0.84 -13.33 16 23 H 0.05 2.94 8.05 -2.92 -0.02 2.92 16 24 C -0.04 -2.44 5.23 84.86 0.44 -1.99 16 25 N -0.96 -61.39 13.97 21.65 0.30 -61.09 16 26 Si 0.95 46.73 24.34 68.60 1.67 48.40 16 27 H -0.27 -12.69 6.62 99.48 0.66 -12.03 16 28 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 29 H -0.26 -11.86 6.64 99.48 0.66 -11.20 16 30 C 0.12 4.89 4.20 86.36 0.36 5.25 16 31 C -0.12 -3.83 5.04 30.67 0.15 -3.67 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.46 6.40 -2.38 -0.02 1.45 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.41 5.29 8.04 -92.71 -0.75 4.55 16 36 H 0.07 1.25 7.69 -2.39 -0.02 1.23 16 37 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.21 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.10 1.16 7.87 -2.38 -0.02 1.15 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.92 7.41 -2.39 -0.02 1.90 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 48 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 49 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 50 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 51 H 0.09 2.28 6.36 -2.39 -0.02 2.27 16 52 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.61 395.07 0.80 -78.81 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -1.81 Total: 13.56 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.54 Total: -3.96 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -4.55 Total: -119.36 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.44 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.40 kcal Total: -79.61 0.80 -78.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997431630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.796 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds