Wall clock time and date at job start Wed Apr 1 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47001 * 2 1 4 4 N 1.46507 * 109.46901 * 120.00051 * 2 1 3 5 5 C 1.34772 * 119.99913 * 274.99825 * 4 2 1 6 6 O 1.21555 * 120.00248 * 0.02562 * 5 4 2 7 7 C 1.47837 * 119.99982 * 180.02562 * 5 4 2 8 8 C 1.39533 * 119.63659 * 179.97438 * 7 5 4 9 9 C 1.38229 * 119.15453 * 180.02562 * 8 7 5 10 10 C 1.39445 * 118.43301 * 0.27611 * 9 8 7 11 11 N 1.39068 * 120.40262 * 179.73271 * 10 9 8 12 12 C 1.46498 * 119.99944 * 354.97939 * 11 10 9 13 13 C 1.46497 * 120.00130 * 174.98605 * 11 10 9 14 14 C 1.39471 * 119.19555 * 359.43195 * 10 9 8 15 15 N 1.31325 * 120.77044 * 0.58530 * 14 10 9 16 16 C 1.53003 * 109.47113 * 239.99713 * 2 1 3 17 17 C 1.53032 * 109.45761 * 180.02562 * 16 2 1 18 18 C 1.53198 * 109.31197 * 178.61758 * 17 16 2 19 19 N 1.46928 * 108.77547 * 54.63160 * 18 17 16 20 20 C 1.36943 * 120.63022 * 126.41127 * 19 18 17 21 21 H 1.07994 * 120.00128 * 215.82320 * 20 19 18 22 22 C 1.38808 * 119.99655 * 35.83081 * 20 19 18 23 23 N 1.31620 * 120.00204 * 15.52801 * 22 20 19 24 24 Si 1.86803 * 119.99878 * 195.53086 * 22 20 19 25 25 H 1.48501 * 109.46968 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47170 * 119.99925 * 24 22 20 27 27 H 1.48502 * 109.46812 * 239.99897 * 24 22 20 28 28 C 1.46926 * 118.74153 * 306.39816 * 19 18 17 29 29 C 1.53046 * 109.45595 * 60.00240 * 16 2 1 30 30 H 1.09004 * 109.47010 * 299.99971 * 1 2 3 31 31 H 1.08990 * 109.47417 * 60.00073 * 1 2 3 32 32 H 1.09009 * 109.47107 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99748 * 94.99720 * 4 2 1 34 34 H 1.07997 * 120.42253 * 0.02761 * 8 7 5 35 35 H 1.08003 * 120.78304 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47104 * 5.28851 * 12 11 10 37 37 H 1.08990 * 109.47139 * 125.29475 * 12 11 10 38 38 H 1.09001 * 109.46890 * 245.29456 * 12 11 10 39 39 H 1.08996 * 109.47471 * 89.99242 * 13 11 10 40 40 H 1.08998 * 109.47443 * 209.99696 * 13 11 10 41 41 H 1.09007 * 109.47090 * 329.99368 * 13 11 10 42 42 H 1.07993 * 119.61327 * 180.27319 * 14 10 9 43 43 H 1.09001 * 109.45921 * 300.02844 * 16 2 1 44 44 H 1.09005 * 109.49909 * 298.56507 * 17 16 2 45 45 H 1.08997 * 109.50444 * 58.66403 * 17 16 2 46 46 H 1.09003 * 109.58602 * 294.84827 * 18 17 16 47 47 H 1.08998 * 109.58897 * 174.41668 * 18 17 16 48 48 H 0.97005 * 120.00264 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58271 * 293.82201 * 28 19 18 50 50 H 1.08993 * 109.59177 * 173.39560 * 28 19 18 51 51 H 1.09000 * 109.49555 * 301.33473 * 29 16 2 52 52 H 1.08995 * 109.49351 * 61.43238 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8576 1.1610 2.4119 7 6 2.6403 -0.7151 3.5641 8 6 2.7712 -0.0115 4.7620 9 6 3.2338 -0.6727 5.8842 10 6 3.5589 -2.0241 5.7718 11 7 4.0333 -2.7278 6.8735 12 6 4.2987 -2.0264 8.1319 13 6 4.2679 -4.1706 6.7755 14 6 3.3964 -2.6630 4.5427 15 7 2.9542 -2.0041 3.4963 16 6 2.0400 -0.7213 -1.2492 17 6 3.5704 -0.7217 -1.2486 18 6 4.0773 -1.4746 -2.4827 19 7 3.4745 -0.8770 -3.6820 20 6 4.2602 -0.4514 -4.7197 21 1 3.9855 0.4311 -5.2784 22 6 5.4096 -1.1543 -5.0535 23 7 5.5905 -2.3752 -4.5964 24 14 6.6999 -0.3674 -6.1515 25 1 6.2610 1.0001 -6.5292 26 1 7.9906 -0.2895 -5.4212 27 1 6.8734 -1.1874 -7.3773 28 6 2.0126 -0.7450 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.5142 1.0363 4.8116 35 1 3.3448 -0.1539 6.8250 36 1 3.9794 -0.9880 8.0434 37 1 3.7480 -2.5083 8.9396 38 1 5.3663 -2.0609 8.3489 39 1 5.2919 -4.3509 6.4485 40 1 4.1115 -4.6312 7.7509 41 1 3.5746 -4.6033 6.0541 42 1 3.6419 -3.7105 4.4492 43 1 1.6762 -1.7488 -1.2492 44 1 3.9345 0.3054 -1.2741 45 1 3.9338 -1.2147 -0.3470 46 1 3.7906 -2.5240 -2.4139 47 1 5.1627 -1.3931 -2.5402 48 1 6.3939 -2.8663 -4.8293 49 1 1.5575 -1.7348 -3.7811 50 1 1.7357 -0.1823 -4.6383 51 1 0.4400 0.0214 -2.4870 52 1 1.9137 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997438186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:18 Heat of formation + Delta-G solvation = 26.033389 kcal Electronic energy + Delta-G solvation = -30456.260518 eV Core-core repulsion = 26456.261293 eV Total energy + Delta-G solvation = -3999.999225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.83242 -39.46049 -37.86678 -37.01381 -35.19554 -32.95750 -32.46306 -31.31905 -30.39570 -30.11124 -28.94128 -28.69204 -26.12133 -25.25897 -23.59998 -23.34551 -22.22132 -21.85532 -20.68854 -20.20427 -19.14971 -18.23817 -17.40287 -16.90800 -16.58797 -15.77995 -15.68670 -15.26109 -14.94355 -14.74948 -14.62534 -14.30147 -13.93182 -13.81079 -13.61827 -13.43923 -13.25019 -13.14915 -13.08933 -12.88124 -12.73680 -12.57896 -12.28262 -12.13887 -12.07327 -11.60419 -11.39592 -11.08775 -10.91088 -10.80810 -10.66083 -10.35429 -10.21178 -10.11389 -10.06470 -9.84962 -9.84386 -9.65320 -9.40323 -9.31493 -8.77752 -8.41473 -7.83891 -6.47868 -5.73142 -3.22751 0.69853 1.04895 2.51702 2.82633 3.32880 3.40148 3.47995 3.50867 3.85206 4.15653 4.28396 4.43242 4.54559 4.57536 4.76235 4.80715 4.84083 5.01835 5.04641 5.10654 5.18319 5.20369 5.34444 5.43176 5.45334 5.48226 5.59209 5.61526 5.73952 5.82932 5.88790 5.93972 6.10117 6.13710 6.20254 6.25759 6.39503 6.44325 6.55987 6.59433 6.70701 6.77080 6.79489 6.81757 6.89358 6.96322 7.10424 7.41553 7.56460 7.66838 7.86249 7.88204 8.40546 8.57100 9.29204 9.90782 10.53170 11.34462 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.002297 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.934801 B =12186.767791 C =13509.125028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.085 0.915 4 N -0.700 5.700 5 C 0.576 3.424 6 O -0.548 6.548 7 C 0.014 3.986 8 C -0.057 4.057 9 C -0.174 4.174 10 C 0.186 3.814 11 N -0.625 5.625 12 C 0.085 3.915 13 C 0.087 3.913 14 C 0.029 3.971 15 N -0.412 5.412 16 C -0.083 4.083 17 C -0.134 4.134 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.061 0.939 22 C 0.009 3.991 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.146 3.854 29 C -0.126 4.126 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.409 0.591 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.160 0.840 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.071 0.929 48 H 0.252 0.748 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.054 0.946 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 -2.155 26.755 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.104 0.896 4 N -0.350 5.350 5 C 0.362 3.638 6 O -0.425 6.425 7 C -0.126 4.126 8 C -0.078 4.078 9 C -0.204 4.204 10 C 0.079 3.921 11 N -0.334 5.334 12 C -0.058 4.058 13 C -0.055 4.055 14 C -0.138 4.138 15 N -0.123 5.123 16 C -0.102 4.102 17 C -0.173 4.173 18 C 0.051 3.949 19 N -0.314 5.314 20 C -0.386 4.386 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.541 5.541 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.020 3.980 29 C -0.165 4.165 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.177 0.823 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.197 -1.936 26.062 26.858 hybrid contribution 1.090 0.132 0.417 1.174 sum -5.108 -1.804 26.478 27.027 Atomic orbital electron populations 1.22207 0.95692 1.01899 1.02170 1.21184 0.93539 0.97588 0.83779 0.89646 1.45936 1.65399 1.14699 1.08996 1.17723 0.77553 0.85908 0.82639 1.90757 1.51591 1.15263 1.84925 1.20868 1.06408 0.90620 0.94674 1.21863 0.93515 1.01293 0.91130 1.21109 1.06218 0.93073 0.99978 1.19125 0.92104 0.92178 0.88651 1.46237 1.69626 1.07654 1.09907 1.21798 1.01023 0.98165 0.84829 1.21752 1.01532 0.79313 1.02940 1.22379 1.04203 1.00463 0.86759 1.67369 1.06298 1.07986 1.30603 1.21309 0.97127 0.99082 0.92698 1.22208 0.93764 1.01490 0.99819 1.20641 0.98151 0.93070 0.83038 1.43969 0.99497 1.72234 1.15657 1.19133 1.04566 1.05474 1.09405 0.92158 1.25236 1.00717 0.94709 0.98441 1.70045 1.26995 1.09175 1.47920 0.86290 0.81830 0.78939 0.80102 1.20151 1.21571 1.21694 1.20908 0.86218 0.96334 0.94550 1.22086 0.98698 0.99961 0.95778 0.92738 0.91155 0.92665 0.75512 0.83565 0.84214 0.90238 0.92084 0.92402 0.92609 0.91033 0.90814 0.82342 0.91436 0.92762 0.93330 0.96327 0.91049 0.93770 0.96593 0.92856 0.92708 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.14 2.19 2.16 -67.92 -0.15 2.05 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 4 N -0.70 -10.40 4.35 -54.75 -0.24 -10.64 16 5 C 0.58 9.03 7.76 -12.34 -0.10 8.93 16 6 O -0.55 -9.88 15.97 5.32 0.08 -9.79 16 7 C 0.01 0.19 6.74 -83.02 -0.56 -0.37 16 8 C -0.06 -0.64 9.62 -39.10 -0.38 -1.02 16 9 C -0.17 -1.56 9.39 -39.14 -0.37 -1.92 16 10 C 0.19 1.65 6.56 -83.67 -0.55 1.10 16 11 N -0.62 -3.97 3.39 -187.40 -0.64 -4.61 16 12 C 0.08 0.35 10.62 59.85 0.64 0.98 16 13 C 0.09 0.37 10.12 59.85 0.61 0.98 16 14 C 0.03 0.29 10.34 -17.31 -0.18 0.11 16 15 N -0.41 -5.25 9.52 -9.63 -0.09 -5.34 16 16 C -0.08 -1.40 1.79 -90.58 -0.16 -1.56 16 17 C -0.13 -2.62 5.22 -26.61 -0.14 -2.75 16 18 C 0.18 4.28 5.27 -3.71 -0.02 4.26 16 19 N -0.59 -15.09 2.94 -172.32 -0.51 -15.60 16 20 C -0.26 -7.18 9.49 -15.06 -0.14 -7.32 16 21 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 22 C 0.01 0.24 4.90 -17.43 -0.09 0.16 16 23 N -0.90 -26.60 11.71 55.49 0.65 -25.95 16 24 Si 0.90 22.08 29.58 -169.99 -5.03 17.06 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 29 C -0.13 -2.20 5.04 -26.61 -0.13 -2.33 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.89 6.40 -51.93 -0.33 0.55 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.41 5.78 7.70 -40.82 -0.31 5.46 16 34 H 0.15 1.57 7.63 -52.49 -0.40 1.17 16 35 H 0.14 0.86 5.83 -52.48 -0.31 0.56 16 36 H 0.08 0.29 5.35 -51.93 -0.28 0.01 16 37 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 41 H 0.07 0.30 6.41 -51.93 -0.33 -0.04 16 42 H 0.16 1.23 6.28 -52.49 -0.33 0.90 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.89 7.41 -51.93 -0.38 0.50 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.93 6.62 -51.93 -0.34 1.59 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 51 H 0.05 0.82 6.36 -51.93 -0.33 0.49 16 52 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 406.65 15.07 6.13 6.13 Total: -1.00 -33.62 406.65 -9.39 -43.01 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.35 Total: 3.18 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.40 Total: 2.55 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.82 Total: -62.13 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.62 -9.39 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997438186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.048 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds