Wall clock time and date at job start Wed Apr 1 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47001 * 2 1 4 4 N 1.46507 * 109.46901 * 120.00051 * 2 1 3 5 5 C 1.34772 * 119.99913 * 274.99825 * 4 2 1 6 6 O 1.21555 * 120.00248 * 0.02562 * 5 4 2 7 7 C 1.47837 * 119.99982 * 180.02562 * 5 4 2 8 8 C 1.39533 * 119.63659 * 179.97438 * 7 5 4 9 9 C 1.38229 * 119.15453 * 180.02562 * 8 7 5 10 10 C 1.39445 * 118.43301 * 0.27611 * 9 8 7 11 11 N 1.39068 * 120.40262 * 179.73271 * 10 9 8 12 12 C 1.46498 * 119.99944 * 354.97939 * 11 10 9 13 13 C 1.46497 * 120.00130 * 174.98605 * 11 10 9 14 14 C 1.39471 * 119.19555 * 359.43195 * 10 9 8 15 15 N 1.31325 * 120.77044 * 0.58530 * 14 10 9 16 16 C 1.53003 * 109.47113 * 239.99713 * 2 1 3 17 17 C 1.53032 * 109.45761 * 180.02562 * 16 2 1 18 18 C 1.53198 * 109.31197 * 178.61758 * 17 16 2 19 19 N 1.46928 * 108.77547 * 54.63160 * 18 17 16 20 20 C 1.36943 * 120.63022 * 126.41127 * 19 18 17 21 21 H 1.07994 * 120.00128 * 215.82320 * 20 19 18 22 22 C 1.38808 * 119.99655 * 35.83081 * 20 19 18 23 23 N 1.31620 * 120.00204 * 15.52801 * 22 20 19 24 24 Si 1.86803 * 119.99878 * 195.53086 * 22 20 19 25 25 H 1.48501 * 109.46968 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47170 * 119.99925 * 24 22 20 27 27 H 1.48502 * 109.46812 * 239.99897 * 24 22 20 28 28 C 1.46926 * 118.74153 * 306.39816 * 19 18 17 29 29 C 1.53046 * 109.45595 * 60.00240 * 16 2 1 30 30 H 1.09004 * 109.47010 * 299.99971 * 1 2 3 31 31 H 1.08990 * 109.47417 * 60.00073 * 1 2 3 32 32 H 1.09009 * 109.47107 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99748 * 94.99720 * 4 2 1 34 34 H 1.07997 * 120.42253 * 0.02761 * 8 7 5 35 35 H 1.08003 * 120.78304 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47104 * 5.28851 * 12 11 10 37 37 H 1.08990 * 109.47139 * 125.29475 * 12 11 10 38 38 H 1.09001 * 109.46890 * 245.29456 * 12 11 10 39 39 H 1.08996 * 109.47471 * 89.99242 * 13 11 10 40 40 H 1.08998 * 109.47443 * 209.99696 * 13 11 10 41 41 H 1.09007 * 109.47090 * 329.99368 * 13 11 10 42 42 H 1.07993 * 119.61327 * 180.27319 * 14 10 9 43 43 H 1.09001 * 109.45921 * 300.02844 * 16 2 1 44 44 H 1.09005 * 109.49909 * 298.56507 * 17 16 2 45 45 H 1.08997 * 109.50444 * 58.66403 * 17 16 2 46 46 H 1.09003 * 109.58602 * 294.84827 * 18 17 16 47 47 H 1.08998 * 109.58897 * 174.41668 * 18 17 16 48 48 H 0.97005 * 120.00264 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58271 * 293.82201 * 28 19 18 50 50 H 1.08993 * 109.59177 * 173.39560 * 28 19 18 51 51 H 1.09000 * 109.49555 * 301.33473 * 29 16 2 52 52 H 1.08995 * 109.49351 * 61.43238 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8576 1.1610 2.4119 7 6 2.6403 -0.7151 3.5641 8 6 2.7712 -0.0115 4.7620 9 6 3.2338 -0.6727 5.8842 10 6 3.5589 -2.0241 5.7718 11 7 4.0333 -2.7278 6.8735 12 6 4.2987 -2.0264 8.1319 13 6 4.2679 -4.1706 6.7755 14 6 3.3964 -2.6630 4.5427 15 7 2.9542 -2.0041 3.4963 16 6 2.0400 -0.7213 -1.2492 17 6 3.5704 -0.7217 -1.2486 18 6 4.0773 -1.4746 -2.4827 19 7 3.4745 -0.8770 -3.6820 20 6 4.2602 -0.4514 -4.7197 21 1 3.9855 0.4311 -5.2784 22 6 5.4096 -1.1543 -5.0535 23 7 5.5905 -2.3752 -4.5964 24 14 6.6999 -0.3674 -6.1515 25 1 6.2610 1.0001 -6.5292 26 1 7.9906 -0.2895 -5.4212 27 1 6.8734 -1.1874 -7.3773 28 6 2.0126 -0.7450 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.5142 1.0363 4.8116 35 1 3.3448 -0.1539 6.8250 36 1 3.9794 -0.9880 8.0434 37 1 3.7480 -2.5083 8.9396 38 1 5.3663 -2.0609 8.3489 39 1 5.2919 -4.3509 6.4485 40 1 4.1115 -4.6312 7.7509 41 1 3.5746 -4.6033 6.0541 42 1 3.6419 -3.7105 4.4492 43 1 1.6762 -1.7488 -1.2492 44 1 3.9345 0.3054 -1.2741 45 1 3.9338 -1.2147 -0.3470 46 1 3.7906 -2.5240 -2.4139 47 1 5.1627 -1.3931 -2.5402 48 1 6.3939 -2.8663 -4.8293 49 1 1.5575 -1.7348 -3.7811 50 1 1.7357 -0.1823 -4.6383 51 1 0.4400 0.0214 -2.4870 52 1 1.9137 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997438186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:17 Heat of formation + Delta-G solvation = 4.871153 kcal Electronic energy + Delta-G solvation = -30457.178182 eV Core-core repulsion = 26456.261293 eV Total energy + Delta-G solvation = -4000.916889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.69846 -40.58305 -39.31562 -37.72048 -36.74994 -34.54215 -33.37888 -32.71297 -31.82429 -31.47371 -30.14079 -29.32671 -27.17965 -26.75309 -24.81178 -24.27417 -23.59734 -23.23262 -21.92052 -21.40690 -20.74212 -19.23651 -18.61503 -18.12227 -17.68723 -16.84983 -16.80346 -16.34076 -16.10657 -15.90733 -15.73621 -15.32543 -15.27221 -15.13343 -14.87610 -14.82622 -14.46666 -14.36733 -14.19838 -13.96672 -13.66255 -13.42597 -13.36742 -13.24008 -13.01126 -12.98966 -12.77435 -12.63860 -12.55085 -12.40641 -12.16533 -11.96214 -11.83497 -11.48783 -11.46277 -11.34319 -11.07379 -11.04535 -10.62855 -10.56203 -10.50645 -10.01959 -8.56048 -8.44252 -7.87063 -5.40745 -0.15571 0.29970 1.43973 1.45802 1.56813 1.80450 2.01669 2.23246 2.50142 2.94895 3.26469 3.30290 3.69027 3.71249 3.73788 3.78387 3.99384 4.00709 4.09293 4.13283 4.26622 4.43281 4.47112 4.50688 4.53539 4.58148 4.60096 4.69334 4.76678 4.77189 4.82503 4.84281 4.89750 4.93452 4.96361 5.00969 5.06770 5.11313 5.17192 5.25751 5.29813 5.39102 5.40075 5.44119 5.48323 5.59351 5.67740 5.75571 6.07830 6.19932 6.43960 6.52209 6.90713 7.17147 7.26110 7.86535 8.42960 9.17834 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.002297 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.934801 B =12186.767791 C =13509.125028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.066 0.934 4 N -0.699 5.699 5 C 0.573 3.427 6 O -0.581 6.581 7 C -0.023 4.023 8 C -0.060 4.060 9 C -0.175 4.175 10 C 0.196 3.804 11 N -0.619 5.619 12 C 0.076 3.924 13 C 0.078 3.922 14 C 0.018 3.982 15 N -0.429 5.429 16 C -0.072 4.072 17 C -0.118 4.118 18 C 0.186 3.814 19 N -0.610 5.610 20 C -0.267 4.267 21 H 0.059 0.941 22 C -0.044 4.044 23 N -0.931 5.931 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.288 1.288 28 C 0.141 3.859 29 C -0.114 4.114 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.412 0.588 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.179 0.821 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.001 0.999 47 H 0.034 0.966 48 H 0.250 0.750 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.091 0.909 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -2.455 28.982 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.084 0.916 4 N -0.348 5.348 5 C 0.361 3.639 6 O -0.461 6.461 7 C -0.161 4.161 8 C -0.081 4.081 9 C -0.204 4.204 10 C 0.086 3.914 11 N -0.326 5.326 12 C -0.066 4.066 13 C -0.063 4.063 14 C -0.150 4.150 15 N -0.140 5.140 16 C -0.091 4.091 17 C -0.157 4.157 18 C 0.060 3.940 19 N -0.334 5.334 20 C -0.398 4.398 21 H 0.077 0.923 22 C -0.241 4.241 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.191 1.191 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.016 3.984 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.249 0.751 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.196 0.804 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.019 0.981 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.071 0.929 51 H 0.110 0.890 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.765 -2.246 28.320 29.203 hybrid contribution 1.313 0.097 -0.115 1.321 sum -5.452 -2.150 28.205 28.807 Atomic orbital electron populations 1.22141 0.93718 1.02813 1.02513 1.20990 0.94933 0.96181 0.83156 0.91574 1.45901 1.65389 1.14764 1.08793 1.18096 0.76877 0.85627 0.83315 1.90718 1.53231 1.16596 1.85554 1.20603 1.09600 0.91385 0.94508 1.21922 0.93617 1.01304 0.91284 1.21362 1.05528 0.93232 1.00293 1.19215 0.90822 0.92288 0.89034 1.46589 1.67697 1.08575 1.09768 1.22033 1.02001 0.98488 0.84079 1.21967 1.01866 0.78124 1.04390 1.22755 1.04079 1.01307 0.86857 1.67267 1.06927 1.07805 1.31981 1.21185 0.94736 0.99748 0.93467 1.21976 0.96031 0.99780 0.97890 1.20430 0.96056 0.92758 0.84765 1.44243 1.01282 1.72308 1.15557 1.19431 1.05264 1.05385 1.09725 0.92293 1.25992 1.02676 0.95193 1.00227 1.70178 1.27409 1.10461 1.49501 0.85271 0.78988 0.78400 0.78168 1.19095 1.21698 1.21499 1.21077 0.83844 0.96846 0.96627 1.21958 1.00808 0.98726 0.93822 0.93325 0.89863 0.91419 0.75103 0.83740 0.81361 0.89775 0.90308 0.91423 0.92185 0.88917 0.90572 0.80417 0.90655 0.94188 0.92184 0.98053 0.94769 0.94089 0.96577 0.92867 0.89036 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.13 71.98 0.66 -3.21 16 2 C 0.15 4.55 2.16 44.99 0.10 4.65 16 3 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.70 -20.79 4.35 -445.40 -1.94 -22.73 16 5 C 0.57 18.35 7.76 86.78 0.67 19.02 16 6 O -0.58 -21.52 15.97 -3.89 -0.06 -21.59 16 7 C -0.02 -0.62 6.74 41.85 0.28 -0.34 16 8 C -0.06 -1.34 9.62 22.58 0.22 -1.12 16 9 C -0.17 -2.82 9.39 22.56 0.21 -2.61 16 10 C 0.20 3.08 6.56 38.58 0.25 3.34 16 11 N -0.62 -6.04 3.39 -746.81 -2.53 -8.57 16 12 C 0.08 0.36 10.62 127.77 1.36 1.72 16 13 C 0.08 0.44 10.12 127.77 1.29 1.73 16 14 C 0.02 0.34 10.34 85.07 0.88 1.22 16 15 N -0.43 -10.83 9.52 -184.39 -1.76 -12.59 16 16 C -0.07 -2.38 1.79 -10.77 -0.02 -2.40 16 17 C -0.12 -4.68 5.22 30.67 0.16 -4.52 16 18 C 0.19 9.29 5.27 86.36 0.45 9.74 16 19 N -0.61 -31.76 2.94 -699.09 -2.06 -33.82 16 20 C -0.27 -15.28 9.49 84.03 0.80 -14.48 16 21 H 0.06 3.32 7.88 -2.91 -0.02 3.29 16 22 C -0.04 -2.57 4.90 84.86 0.42 -2.15 16 23 N -0.93 -56.68 11.71 21.65 0.25 -56.42 16 24 Si 0.96 46.19 29.58 68.60 2.03 48.22 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 28 C 0.14 5.98 6.52 86.36 0.56 6.54 16 29 C -0.11 -3.83 5.04 30.67 0.15 -3.67 16 30 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 1.86 6.40 -2.39 -0.02 1.85 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.41 11.62 7.70 -92.71 -0.71 10.91 16 34 H 0.14 3.17 7.63 -2.91 -0.02 3.15 16 35 H 0.17 1.62 5.83 -2.91 -0.02 1.60 16 36 H 0.08 0.33 5.35 -2.39 -0.01 0.32 16 37 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.09 0.17 8.07 -2.39 -0.02 0.15 16 41 H 0.08 0.41 6.41 -2.38 -0.02 0.40 16 42 H 0.18 2.47 6.28 -2.91 -0.02 2.46 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.06 2.23 7.41 -2.39 -0.02 2.21 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.03 1.93 6.62 -2.39 -0.02 1.91 16 48 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 51 H 0.09 2.45 6.36 -2.39 -0.02 2.43 16 52 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.12 406.65 2.60 -72.52 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.21 Total: 21.53 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 8.45 Total: 13.44 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -8.03 Total: -134.13 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.12 2.60 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997438186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.389 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds