Wall clock time and date at job start Wed Apr 1 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47318 * 2 1 4 4 N 1.46506 * 109.47012 * 119.99356 * 2 1 3 5 5 C 1.34766 * 120.00057 * 274.99762 * 4 2 1 6 6 O 1.21510 * 120.00357 * 0.02562 * 5 4 2 7 7 C 1.48191 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.39032 * 119.69260 * 179.73069 * 7 5 4 9 9 C 1.39455 * 118.95437 * 179.71858 * 8 7 5 10 10 N 1.39196 * 120.82881 * 180.29808 * 9 8 7 11 11 C 1.46499 * 119.99470 * 185.96352 * 10 9 8 12 12 C 1.46503 * 119.99937 * 5.96952 * 10 9 8 13 13 C 1.39412 * 118.33342 * 0.54183 * 9 8 7 14 14 C 1.38229 * 119.26726 * 359.73735 * 13 9 8 15 15 N 1.31642 * 120.99472 * 359.97438 * 14 13 9 16 16 C 1.53001 * 109.47439 * 239.99487 * 2 1 3 17 17 C 1.53036 * 109.46424 * 180.02562 * 16 2 1 18 18 C 1.53194 * 109.31336 * 178.61362 * 17 16 2 19 19 N 1.46923 * 108.77250 * 54.63457 * 18 17 16 20 20 C 1.36938 * 120.62976 * 126.41434 * 19 18 17 21 21 H 1.07995 * 120.00397 * 210.19273 * 20 19 18 22 22 C 1.38817 * 119.99803 * 30.19253 * 20 19 18 23 23 N 1.31618 * 120.00044 * 12.35274 * 22 20 19 24 24 Si 1.86804 * 119.99837 * 192.35325 * 22 20 19 25 25 H 1.48503 * 109.46941 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47323 * 119.99884 * 24 22 20 27 27 H 1.48501 * 109.47125 * 240.00084 * 24 22 20 28 28 C 1.46918 * 118.74186 * 306.38868 * 19 18 17 29 29 C 1.53045 * 109.45639 * 59.99829 * 16 2 1 30 30 H 1.08993 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46910 * 300.00795 * 1 2 3 32 32 H 1.09000 * 109.47078 * 60.00000 * 1 2 3 33 33 H 0.97005 * 119.99322 * 94.72243 * 4 2 1 34 34 H 1.07996 * 120.51754 * 359.97438 * 8 7 5 35 35 H 1.08995 * 109.47263 * 354.93759 * 11 10 9 36 36 H 1.09004 * 109.46926 * 114.94106 * 11 10 9 37 37 H 1.09004 * 109.46770 * 234.93723 * 11 10 9 38 38 H 1.08994 * 109.47417 * 89.99907 * 12 10 9 39 39 H 1.08998 * 109.46485 * 209.99624 * 12 10 9 40 40 H 1.08995 * 109.47254 * 329.99616 * 12 10 9 41 41 H 1.08003 * 120.36427 * 179.75744 * 13 9 8 42 42 H 1.08008 * 119.50059 * 179.97438 * 14 13 9 43 43 H 1.09008 * 109.45754 * 300.03085 * 16 2 1 44 44 H 1.08999 * 109.49548 * 298.56597 * 17 16 2 45 45 H 1.09004 * 109.49596 * 58.66386 * 17 16 2 46 46 H 1.08998 * 109.58533 * 294.84609 * 18 17 16 47 47 H 1.09002 * 109.58645 * 174.42516 * 18 17 16 48 48 H 0.97001 * 119.99874 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.59100 * 293.82498 * 28 19 18 50 50 H 1.09002 * 109.59124 * 173.39517 * 28 19 18 51 51 H 1.08999 * 109.49982 * 301.34081 * 29 16 2 52 52 H 1.08998 * 109.49676 * 61.44112 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3571 6 8 1.8577 1.1608 2.4117 7 6 2.6404 -0.7166 3.5673 8 6 2.7761 -0.0153 4.7601 9 6 3.2361 -0.6893 5.8910 10 7 3.3808 -0.0269 7.1066 11 6 3.9874 -0.7157 8.2484 12 6 2.9262 1.3590 7.2442 13 6 3.5524 -2.0419 5.7721 14 6 3.3961 -2.6676 4.5495 15 7 2.9540 -2.0057 3.5009 16 6 2.0400 -0.7214 -1.2492 17 6 3.5704 -0.7218 -1.2486 18 6 4.0773 -1.4748 -2.4826 19 7 3.4745 -0.8772 -3.6819 20 6 4.2601 -0.4518 -4.7196 21 1 3.9398 0.3753 -5.3357 22 6 5.4685 -1.0837 -4.9797 23 7 5.7497 -2.2308 -4.3988 24 14 6.6954 -0.3059 -6.1541 25 1 6.1439 0.9723 -6.6711 26 1 7.9686 -0.0421 -5.4367 27 1 6.9488 -1.2299 -7.2887 28 6 2.0127 -0.7453 -3.7468 29 6 1.5297 0.0002 -2.4986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2451 -1.6327 1.1537 34 1 2.5252 1.0338 4.8110 35 1 4.1779 -1.7563 7.9856 36 1 4.9272 -0.2288 8.5090 37 1 3.3085 -0.6745 9.1002 38 1 1.8862 1.3696 7.5702 39 1 3.5433 1.8721 7.9817 40 1 3.0110 1.8663 6.2833 41 1 3.9153 -2.5948 6.6260 42 1 3.6404 -3.7152 4.4530 43 1 1.6761 -1.7489 -1.2491 44 1 3.9345 0.3053 -1.2741 45 1 3.9337 -1.2148 -0.3469 46 1 3.7906 -2.5241 -2.4137 47 1 5.1628 -1.3935 -2.5400 48 1 6.5942 -2.6721 -4.5802 49 1 1.5575 -1.7351 -3.7810 50 1 1.7357 -0.1826 -4.6383 51 1 0.4400 0.0213 -2.4870 52 1 1.9137 1.0202 -2.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997439736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:23 Heat of formation + Delta-G solvation = 28.685261 kcal Electronic energy + Delta-G solvation = -30564.056043 eV Core-core repulsion = 26564.171811 eV Total energy + Delta-G solvation = -3999.884232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.81400 -39.45037 -37.84702 -37.17235 -35.25215 -32.89562 -31.87933 -31.50082 -30.70171 -30.12347 -28.93411 -28.53519 -25.87549 -25.40091 -24.39386 -22.83961 -22.32381 -21.87099 -20.54102 -20.19778 -19.09834 -18.24105 -17.21106 -16.71453 -16.44416 -15.80224 -15.65726 -15.47326 -15.04418 -14.77322 -14.61846 -14.36584 -14.13217 -13.87473 -13.62199 -13.41575 -13.25939 -13.15676 -13.05334 -12.84207 -12.77216 -12.57358 -12.29464 -12.10526 -11.65081 -11.57500 -11.43001 -11.13070 -10.96149 -10.88970 -10.64959 -10.35363 -10.24102 -10.10895 -10.06178 -9.82129 -9.63714 -9.42265 -9.39564 -9.34318 -8.80086 -8.41492 -8.05195 -6.55304 -5.71607 -3.17554 0.58776 1.22227 2.54097 2.80397 3.23502 3.40706 3.48145 3.50440 3.84620 4.14097 4.38769 4.43974 4.54566 4.74437 4.82662 4.84289 4.90646 5.03980 5.10152 5.14637 5.23566 5.27893 5.32323 5.43467 5.44939 5.47871 5.56878 5.60812 5.69336 5.72461 5.84316 5.91689 6.07954 6.18640 6.20649 6.28934 6.37582 6.42659 6.57304 6.65566 6.69161 6.73923 6.80397 6.87479 6.88438 6.94999 7.08072 7.48304 7.56948 7.77593 7.85958 7.86226 8.31609 8.54427 9.29592 9.92184 10.49931 11.36248 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.002246 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.018727 B =12463.854423 C =13347.508471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.086 0.914 4 N -0.695 5.695 5 C 0.569 3.431 6 O -0.541 6.541 7 C 0.124 3.876 8 C -0.190 4.190 9 C 0.243 3.757 10 N -0.628 5.628 11 C 0.087 3.913 12 C 0.087 3.913 13 C -0.239 4.239 14 C 0.141 3.859 15 N -0.499 5.499 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.248 4.248 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.905 5.905 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.146 3.854 29 C -0.126 4.126 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.252 0.748 49 H 0.017 0.983 50 H 0.053 0.947 51 H 0.054 0.946 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 1.164 26.086 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.104 0.896 4 N -0.345 5.345 5 C 0.354 3.646 6 O -0.418 6.418 7 C -0.014 4.014 8 C -0.216 4.216 9 C 0.132 3.868 10 N -0.339 5.339 11 C -0.055 4.055 12 C -0.056 4.056 13 C -0.264 4.264 14 C -0.017 4.017 15 N -0.213 5.213 16 C -0.103 4.103 17 C -0.173 4.173 18 C 0.046 3.954 19 N -0.316 5.316 20 C -0.378 4.378 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.550 5.550 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.020 3.980 29 C -0.165 4.165 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.179 0.821 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.382 1.617 25.419 26.518 hybrid contribution 0.992 0.244 0.428 1.108 sum -6.390 1.861 25.847 26.690 Atomic orbital electron populations 1.22207 0.95604 1.01978 1.02206 1.21220 0.93586 0.97620 0.83749 0.89593 1.45956 1.64903 1.14775 1.08879 1.17880 0.77968 0.85990 0.82786 1.90753 1.50977 1.15219 1.84829 1.20933 0.96820 0.90299 0.93301 1.21588 1.06640 1.01943 0.91426 1.17972 0.91717 0.91359 0.85744 1.46267 1.65607 1.13287 1.08753 1.21767 0.97615 0.98253 0.87901 1.21740 0.99497 0.81256 1.03066 1.21841 1.10268 0.93613 1.00696 1.22504 0.92413 0.99767 0.87049 1.67624 1.13845 1.07762 1.32115 1.21325 0.97325 0.99052 0.92565 1.22231 0.93542 1.01501 1.00073 1.20775 0.99470 0.92639 0.82471 1.44043 0.99491 1.72063 1.16000 1.19230 1.00815 1.09968 1.07803 0.91829 1.25123 1.00189 0.95436 0.98994 1.70001 1.23708 1.15146 1.46123 0.86217 0.81385 0.78657 0.80496 1.20283 1.21645 1.21741 1.20896 0.86159 0.96379 0.94614 1.22085 0.98678 0.99972 0.95782 0.92582 0.92752 0.91083 0.75237 0.83679 0.90183 0.92468 0.92199 0.92820 0.91090 0.90684 0.84500 0.82134 0.91400 0.92853 0.93323 0.96563 0.89473 0.93766 0.96553 0.92883 0.92708 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.13 37.16 0.34 -1.80 16 2 C 0.14 2.15 2.16 -67.93 -0.15 2.00 16 3 H 0.09 1.46 7.58 -51.93 -0.39 1.06 16 4 N -0.70 -10.21 4.35 -54.64 -0.24 -10.45 16 5 C 0.57 8.86 7.78 -12.18 -0.09 8.76 16 6 O -0.54 -9.63 15.98 5.36 0.09 -9.54 16 7 C 0.12 1.70 6.75 -83.05 -0.56 1.14 16 8 C -0.19 -2.28 8.83 -38.83 -0.34 -2.63 16 9 C 0.24 2.39 6.56 -83.63 -0.55 1.84 16 10 N -0.63 -4.74 3.40 -187.37 -0.64 -5.38 16 11 C 0.09 0.41 10.63 59.85 0.64 1.04 16 12 C 0.09 0.53 10.38 59.85 0.62 1.15 16 13 C -0.24 -2.06 9.37 -39.15 -0.37 -2.42 16 14 C 0.14 1.38 11.17 -17.64 -0.20 1.18 16 15 N -0.50 -6.32 9.54 -9.89 -0.09 -6.42 16 16 C -0.08 -1.40 1.79 -90.58 -0.16 -1.56 16 17 C -0.13 -2.63 5.22 -26.61 -0.14 -2.77 16 18 C 0.17 4.18 5.27 -3.71 -0.02 4.16 16 19 N -0.59 -15.08 2.99 -172.32 -0.51 -15.59 16 20 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 21 H 0.06 1.75 7.86 -52.49 -0.41 1.34 16 22 C 0.00 0.02 5.02 -17.43 -0.09 -0.07 16 23 N -0.90 -26.64 11.06 55.49 0.61 -26.02 16 24 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 29 C -0.13 -2.17 5.04 -26.60 -0.13 -2.31 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 33 H 0.41 5.75 7.73 -40.82 -0.32 5.44 16 34 H 0.15 1.71 5.74 -52.49 -0.30 1.41 16 35 H 0.08 0.31 5.38 -51.93 -0.28 0.03 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 40 H 0.07 0.52 6.05 -51.93 -0.31 0.20 16 41 H 0.14 0.78 5.86 -52.48 -0.31 0.48 16 42 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.89 7.41 -51.93 -0.38 0.51 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 51 H 0.05 0.80 6.36 -51.93 -0.33 0.47 16 52 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -33.20 405.64 -9.37 -42.57 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.30 Total: 3.95 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.37 Total: 3.71 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.87 Total: -63.86 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.20 -9.37 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997439736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.251 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds