Wall clock time and date at job start Wed Apr 1 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47318 * 2 1 4 4 N 1.46506 * 109.47012 * 119.99356 * 2 1 3 5 5 C 1.34766 * 120.00057 * 274.99762 * 4 2 1 6 6 O 1.21510 * 120.00357 * 0.02562 * 5 4 2 7 7 C 1.48191 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.39032 * 119.69260 * 179.73069 * 7 5 4 9 9 C 1.39455 * 118.95437 * 179.71858 * 8 7 5 10 10 N 1.39196 * 120.82881 * 180.29808 * 9 8 7 11 11 C 1.46499 * 119.99470 * 185.96352 * 10 9 8 12 12 C 1.46503 * 119.99937 * 5.96952 * 10 9 8 13 13 C 1.39412 * 118.33342 * 0.54183 * 9 8 7 14 14 C 1.38229 * 119.26726 * 359.73735 * 13 9 8 15 15 N 1.31642 * 120.99472 * 359.97438 * 14 13 9 16 16 C 1.53001 * 109.47439 * 239.99487 * 2 1 3 17 17 C 1.53036 * 109.46424 * 180.02562 * 16 2 1 18 18 C 1.53194 * 109.31336 * 178.61362 * 17 16 2 19 19 N 1.46923 * 108.77250 * 54.63457 * 18 17 16 20 20 C 1.36938 * 120.62976 * 126.41434 * 19 18 17 21 21 H 1.07995 * 120.00397 * 210.19273 * 20 19 18 22 22 C 1.38817 * 119.99803 * 30.19253 * 20 19 18 23 23 N 1.31618 * 120.00044 * 12.35274 * 22 20 19 24 24 Si 1.86804 * 119.99837 * 192.35325 * 22 20 19 25 25 H 1.48503 * 109.46941 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47323 * 119.99884 * 24 22 20 27 27 H 1.48501 * 109.47125 * 240.00084 * 24 22 20 28 28 C 1.46918 * 118.74186 * 306.38868 * 19 18 17 29 29 C 1.53045 * 109.45639 * 59.99829 * 16 2 1 30 30 H 1.08993 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46910 * 300.00795 * 1 2 3 32 32 H 1.09000 * 109.47078 * 60.00000 * 1 2 3 33 33 H 0.97005 * 119.99322 * 94.72243 * 4 2 1 34 34 H 1.07996 * 120.51754 * 359.97438 * 8 7 5 35 35 H 1.08995 * 109.47263 * 354.93759 * 11 10 9 36 36 H 1.09004 * 109.46926 * 114.94106 * 11 10 9 37 37 H 1.09004 * 109.46770 * 234.93723 * 11 10 9 38 38 H 1.08994 * 109.47417 * 89.99907 * 12 10 9 39 39 H 1.08998 * 109.46485 * 209.99624 * 12 10 9 40 40 H 1.08995 * 109.47254 * 329.99616 * 12 10 9 41 41 H 1.08003 * 120.36427 * 179.75744 * 13 9 8 42 42 H 1.08008 * 119.50059 * 179.97438 * 14 13 9 43 43 H 1.09008 * 109.45754 * 300.03085 * 16 2 1 44 44 H 1.08999 * 109.49548 * 298.56597 * 17 16 2 45 45 H 1.09004 * 109.49596 * 58.66386 * 17 16 2 46 46 H 1.08998 * 109.58533 * 294.84609 * 18 17 16 47 47 H 1.09002 * 109.58645 * 174.42516 * 18 17 16 48 48 H 0.97001 * 119.99874 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.59100 * 293.82498 * 28 19 18 50 50 H 1.09002 * 109.59124 * 173.39517 * 28 19 18 51 51 H 1.08999 * 109.49982 * 301.34081 * 29 16 2 52 52 H 1.08998 * 109.49676 * 61.44112 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3571 6 8 1.8577 1.1608 2.4117 7 6 2.6404 -0.7166 3.5673 8 6 2.7761 -0.0153 4.7601 9 6 3.2361 -0.6893 5.8910 10 7 3.3808 -0.0269 7.1066 11 6 3.9874 -0.7157 8.2484 12 6 2.9262 1.3590 7.2442 13 6 3.5524 -2.0419 5.7721 14 6 3.3961 -2.6676 4.5495 15 7 2.9540 -2.0057 3.5009 16 6 2.0400 -0.7214 -1.2492 17 6 3.5704 -0.7218 -1.2486 18 6 4.0773 -1.4748 -2.4826 19 7 3.4745 -0.8772 -3.6819 20 6 4.2601 -0.4518 -4.7196 21 1 3.9398 0.3753 -5.3357 22 6 5.4685 -1.0837 -4.9797 23 7 5.7497 -2.2308 -4.3988 24 14 6.6954 -0.3059 -6.1541 25 1 6.1439 0.9723 -6.6711 26 1 7.9686 -0.0421 -5.4367 27 1 6.9488 -1.2299 -7.2887 28 6 2.0127 -0.7453 -3.7468 29 6 1.5297 0.0002 -2.4986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2451 -1.6327 1.1537 34 1 2.5252 1.0338 4.8110 35 1 4.1779 -1.7563 7.9856 36 1 4.9272 -0.2288 8.5090 37 1 3.3085 -0.6745 9.1002 38 1 1.8862 1.3696 7.5702 39 1 3.5433 1.8721 7.9817 40 1 3.0110 1.8663 6.2833 41 1 3.9153 -2.5948 6.6260 42 1 3.6404 -3.7152 4.4530 43 1 1.6761 -1.7489 -1.2491 44 1 3.9345 0.3053 -1.2741 45 1 3.9337 -1.2148 -0.3469 46 1 3.7906 -2.5241 -2.4137 47 1 5.1628 -1.3935 -2.5400 48 1 6.5942 -2.6721 -4.5802 49 1 1.5575 -1.7351 -3.7810 50 1 1.7357 -0.1826 -4.6383 51 1 0.4400 0.0213 -2.4870 52 1 1.9137 1.0202 -2.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997439736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:22 Heat of formation + Delta-G solvation = 7.934228 kcal Electronic energy + Delta-G solvation = -30564.955875 eV Core-core repulsion = 26564.171811 eV Total energy + Delta-G solvation = -4000.784064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.72255 -40.56694 -39.31852 -37.86958 -36.81105 -34.55182 -33.01002 -32.34039 -32.00965 -31.79887 -30.25090 -29.22249 -27.17495 -26.52141 -25.52205 -24.21156 -23.56993 -23.17231 -21.89693 -21.36851 -20.64446 -19.18962 -18.63395 -18.02549 -17.40354 -16.85301 -16.83092 -16.38301 -16.23270 -15.96655 -15.76235 -15.33035 -15.28202 -15.14664 -14.91796 -14.86763 -14.82348 -14.39425 -14.21709 -13.96396 -13.54682 -13.43588 -13.32921 -13.17191 -13.06008 -13.03684 -12.76076 -12.64199 -12.39990 -12.24650 -12.14857 -11.93737 -11.80925 -11.64559 -11.48120 -11.39063 -11.10031 -11.05709 -10.53945 -10.49234 -10.28962 -9.99285 -8.66363 -8.61232 -7.84765 -5.33847 -0.29034 0.45202 1.45188 1.46603 1.57210 1.76183 1.92374 2.20537 2.51314 2.95642 3.22706 3.29480 3.69993 3.72557 3.77240 3.84369 3.99174 4.07185 4.13281 4.17846 4.27284 4.41993 4.45184 4.48793 4.51335 4.58273 4.60652 4.69192 4.73483 4.76355 4.77547 4.83081 4.85452 4.93015 4.95808 4.99140 5.01395 5.06968 5.12227 5.24725 5.30698 5.39270 5.45499 5.48804 5.55013 5.60154 5.68162 5.80999 6.10655 6.24722 6.43118 6.46017 6.94742 7.17893 7.18070 7.89482 8.41279 9.20788 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.002246 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.018727 B =12463.854423 C =13347.508471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.067 0.933 4 N -0.692 5.692 5 C 0.566 3.434 6 O -0.572 6.572 7 C 0.100 3.900 8 C -0.202 4.202 9 C 0.238 3.762 10 N -0.628 5.628 11 C 0.081 3.919 12 C 0.082 3.918 13 C -0.228 4.228 14 C 0.134 3.866 15 N -0.520 5.520 16 C -0.073 4.073 17 C -0.119 4.119 18 C 0.180 3.820 19 N -0.613 5.613 20 C -0.260 4.260 21 H 0.064 0.936 22 C -0.053 4.053 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.290 1.290 28 C 0.141 3.859 29 C -0.114 4.114 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.171 0.829 42 H 0.191 0.809 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.059 0.941 46 H -0.001 1.001 47 H 0.049 0.951 48 H 0.249 0.751 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.092 0.908 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 0.891 28.083 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.085 0.915 4 N -0.342 5.342 5 C 0.352 3.648 6 O -0.452 6.452 7 C -0.036 4.036 8 C -0.229 4.229 9 C 0.126 3.874 10 N -0.338 5.338 11 C -0.061 4.061 12 C -0.060 4.060 13 C -0.252 4.252 14 C -0.024 4.024 15 N -0.236 5.236 16 C -0.092 4.092 17 C -0.158 4.158 18 C 0.055 3.945 19 N -0.336 5.336 20 C -0.390 4.390 21 H 0.082 0.918 22 C -0.248 4.248 23 N -0.582 5.582 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.217 1.217 28 C 0.015 3.985 29 C -0.153 4.153 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.189 0.811 42 H 0.208 0.792 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.037 0.963 50 H 0.072 0.928 51 H 0.110 0.890 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.108 1.351 27.443 28.648 hybrid contribution 1.221 0.304 -0.080 1.261 sum -6.887 1.656 27.363 28.265 Atomic orbital electron populations 1.22144 0.93546 1.02946 1.02584 1.21038 0.95038 0.96216 0.83073 0.91504 1.45921 1.64758 1.14858 1.08645 1.18242 0.77337 0.85724 0.83478 1.90719 1.52479 1.16528 1.85440 1.20688 0.98908 0.91120 0.92924 1.21594 1.07504 1.01768 0.92011 1.18119 0.91282 0.92023 0.86017 1.46559 1.64916 1.13748 1.08615 1.22000 0.98235 0.98642 0.87208 1.21848 1.00345 0.80865 1.02984 1.22184 1.08639 0.93074 1.01350 1.23066 0.91595 1.00948 0.86831 1.67576 1.14979 1.07360 1.33686 1.21197 0.94807 0.99790 0.93369 1.21993 0.95942 0.99702 0.98135 1.20542 0.97383 0.92354 0.84259 1.44318 1.01346 1.72123 1.15844 1.19547 1.01478 1.09855 1.08120 0.91794 1.25880 1.01976 0.96020 1.00969 1.70158 1.23929 1.16451 1.47666 0.85210 0.78835 0.78099 0.78348 1.19134 1.21856 1.21687 1.21082 0.83700 0.96998 0.96689 1.21963 1.00835 0.98708 0.93843 0.91272 0.93328 0.89744 0.74770 0.84480 0.89178 0.91501 0.90706 0.92295 0.88946 0.92068 0.81140 0.79236 0.90520 0.94414 0.92247 0.98268 0.93248 0.94190 0.96341 0.92761 0.88952 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.13 71.98 0.66 -3.12 16 2 C 0.15 4.44 2.16 44.99 0.10 4.53 16 3 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 4 N -0.69 -20.26 4.35 -445.08 -1.93 -22.20 16 5 C 0.57 18.00 7.78 86.89 0.68 18.67 16 6 O -0.57 -21.05 15.98 -3.75 -0.06 -21.11 16 7 C 0.10 2.78 6.75 41.83 0.28 3.06 16 8 C -0.20 -4.90 8.83 22.75 0.20 -4.70 16 9 C 0.24 4.36 6.56 38.55 0.25 4.61 16 10 N -0.63 -8.24 3.40 -746.71 -2.54 -10.77 16 11 C 0.08 0.50 10.63 127.77 1.36 1.86 16 12 C 0.08 0.90 10.38 127.77 1.33 2.22 16 13 C -0.23 -3.35 9.37 22.55 0.21 -3.14 16 14 C 0.13 2.35 11.17 84.72 0.95 3.30 16 15 N -0.52 -12.91 9.54 -185.20 -1.77 -14.67 16 16 C -0.07 -2.36 1.79 -10.77 -0.02 -2.38 16 17 C -0.12 -4.72 5.22 30.67 0.16 -4.56 16 18 C 0.18 9.02 5.27 86.36 0.45 9.48 16 19 N -0.61 -31.63 2.99 -699.10 -2.09 -33.72 16 20 C -0.26 -14.71 9.59 84.03 0.81 -13.90 16 21 H 0.06 3.54 7.86 -2.91 -0.02 3.52 16 22 C -0.05 -3.07 5.02 84.86 0.43 -2.64 16 23 N -0.94 -56.69 11.06 21.65 0.24 -56.45 16 24 Si 0.97 46.19 29.57 68.60 2.03 48.22 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 C 0.14 5.84 6.52 86.37 0.56 6.40 16 29 C -0.11 -3.77 5.04 30.68 0.15 -3.62 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.83 6.40 -2.39 -0.02 1.82 16 33 H 0.42 11.48 7.73 -92.70 -0.72 10.76 16 34 H 0.14 3.42 5.74 -2.91 -0.02 3.40 16 35 H 0.09 0.36 5.38 -2.39 -0.01 0.35 16 36 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 40 H 0.06 0.85 6.05 -2.39 -0.01 0.83 16 41 H 0.17 1.26 5.86 -2.91 -0.02 1.24 16 42 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.21 7.41 -2.38 -0.02 2.19 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 51 H 0.09 2.40 6.36 -2.39 -0.02 2.39 16 52 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.44 405.64 2.65 -71.79 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.21 Total: 22.82 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 8.55 Total: 16.09 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -8.09 Total: -137.81 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.44 2.65 -71.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997439736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.722 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds