Wall clock time and date at job start Wed Apr 1 2020 05:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47112 * 2 1 4 4 N 1.46503 * 109.47467 * 239.99830 * 2 1 3 5 5 C 1.34772 * 119.99974 * 84.99864 * 4 2 1 6 6 O 1.21625 * 120.00145 * 354.95813 * 5 4 2 7 7 C 1.47165 * 120.00136 * 174.96206 * 5 4 2 8 8 C 1.38404 * 126.88173 * 4.46817 * 7 5 4 9 9 C 1.39675 * 105.35878 * 180.02562 * 8 7 5 10 10 C 1.50701 * 126.07099 * 179.97438 * 9 8 7 11 11 C 1.53006 * 117.49644 * 343.74431 * 10 9 8 12 12 C 1.52997 * 117.49603 * 275.08808 * 10 9 8 13 13 N 1.30858 * 107.86109 * 0.02562 * 9 8 7 14 14 N 1.28447 * 110.92634 * 359.71191 * 13 9 8 15 15 C 1.46499 * 125.18823 * 180.27369 * 14 13 9 16 16 C 1.53007 * 109.47080 * 119.99958 * 2 1 3 17 17 C 1.53037 * 109.45626 * 299.99737 * 16 2 1 18 18 C 1.53197 * 109.31132 * 178.61504 * 17 16 2 19 19 N 1.46933 * 108.77487 * 54.63576 * 18 17 16 20 20 C 1.36935 * 120.62768 * 126.36757 * 19 18 17 21 21 H 1.07995 * 120.00489 * 330.79339 * 20 19 18 22 22 C 1.38816 * 119.99750 * 150.79139 * 20 19 18 23 23 N 1.31617 * 119.99743 * 336.24054 * 22 20 19 24 24 Si 1.86802 * 119.99835 * 155.96038 * 22 20 19 25 25 H 1.48494 * 109.46984 * 84.99983 * 24 22 20 26 26 H 1.48505 * 109.46981 * 205.00024 * 24 22 20 27 27 H 1.48497 * 109.46940 * 324.99998 * 24 22 20 28 28 C 1.46920 * 118.73839 * 306.64627 * 19 18 17 29 29 C 1.52769 * 109.01155 * 53.30727 * 28 19 18 30 30 H 1.09000 * 109.47004 * 300.00060 * 1 2 3 31 31 H 1.08999 * 109.47125 * 60.00553 * 1 2 3 32 32 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00119 * 265.00160 * 4 2 1 34 34 H 1.08003 * 127.32486 * 0.02585 * 8 7 5 35 35 H 1.08993 * 115.55115 * 129.41345 * 10 9 8 36 36 H 1.09002 * 117.49620 * 0.02562 * 11 10 9 37 37 H 1.09007 * 117.49519 * 145.01978 * 11 10 9 38 38 H 1.09003 * 117.49720 * 214.97607 * 12 10 9 39 39 H 1.08995 * 117.50394 * 359.97291 * 12 10 9 40 40 H 1.08995 * 109.47555 * 268.39163 * 15 14 13 41 41 H 1.09000 * 109.47628 * 28.39594 * 15 14 13 42 42 H 1.08999 * 109.47098 * 148.39614 * 15 14 13 43 43 H 1.08997 * 109.46267 * 59.97789 * 16 2 1 44 44 H 1.09004 * 109.49844 * 58.66685 * 17 16 2 45 45 H 1.09001 * 109.49961 * 298.56565 * 17 16 2 46 46 H 1.09003 * 109.58576 * 294.85462 * 18 17 16 47 47 H 1.08992 * 109.58935 * 174.42661 * 18 17 16 48 48 H 0.97002 * 119.99609 * 179.72164 * 23 22 20 49 49 H 1.08997 * 109.59204 * 173.14468 * 28 19 18 50 50 H 1.09007 * 109.58857 * 293.56675 * 28 19 18 51 51 H 1.08995 * 109.56282 * 185.55548 * 29 28 19 52 52 H 1.08993 * 109.35485 * 65.49621 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.7722 1.1360 -2.4362 7 6 2.7412 -0.6809 -3.5292 8 6 3.1339 -2.0047 -3.6247 9 6 3.6325 -2.1499 -4.9214 10 6 4.1887 -3.4154 -5.5215 11 6 4.5713 -4.5438 -4.5616 12 6 5.6631 -3.7315 -5.2624 13 7 3.5319 -0.9918 -5.5221 14 7 3.0115 -0.1140 -4.7421 15 6 2.7512 1.2831 -5.0978 16 6 2.0400 -0.7213 1.2493 17 6 1.5297 0.0005 2.4986 18 6 2.0135 -0.7442 3.7470 19 7 3.4753 -0.8771 3.6816 20 6 4.2616 -0.4508 4.7185 21 1 3.9344 0.3666 5.3438 22 6 5.4794 -1.0695 4.9658 23 7 5.6849 -2.3042 4.5588 24 14 6.8292 -0.1470 5.8695 25 1 6.6251 -0.2811 7.3343 26 1 8.1503 -0.7154 5.4996 27 1 6.7850 1.2888 5.4930 28 6 4.0777 -1.4702 2.4800 29 6 3.5704 -0.7225 1.2481 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 3.0687 -2.7640 -2.8594 35 1 3.7763 -3.6970 -6.4903 36 1 4.4202 -4.3709 -3.4960 37 1 4.4108 -5.5678 -4.8991 38 1 6.2206 -4.2214 -6.0607 39 1 6.2309 -3.0240 -4.6583 40 1 3.6124 1.8937 -4.8266 41 1 2.5760 1.3583 -6.1710 42 1 1.8714 1.6370 -4.5604 43 1 1.6763 -1.7488 1.2494 44 1 0.4399 0.0215 2.4870 45 1 1.9137 1.0205 2.5118 46 1 1.5578 -1.7338 3.7816 47 1 1.7372 -0.1811 4.6383 48 1 6.5374 -2.7351 4.7281 49 1 5.1630 -1.3861 2.5356 50 1 3.7938 -2.5203 2.4092 51 1 3.9331 -1.2161 0.3466 52 1 3.9351 0.3043 1.2732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997599073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:32 Heat of formation + Delta-G solvation = 79.118270 kcal Electronic energy + Delta-G solvation = -30979.980340 eV Core-core repulsion = 26982.283048 eV Total energy + Delta-G solvation = -3997.697292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.76180 -39.83121 -37.98905 -37.40487 -35.43321 -33.41966 -32.84023 -31.68329 -30.41598 -30.29759 -28.78449 -27.44424 -25.48105 -24.22569 -23.46563 -22.72334 -22.32317 -21.99743 -20.91364 -20.46337 -19.63781 -19.06988 -17.96034 -16.76859 -16.56427 -16.33330 -15.95497 -15.52763 -14.85507 -14.70913 -14.60586 -14.35227 -14.18238 -13.82384 -13.57617 -13.41578 -13.37022 -13.05835 -12.96790 -12.72639 -12.43226 -12.29723 -12.16369 -11.75763 -11.72098 -11.54928 -11.27450 -11.22773 -11.04262 -10.86785 -10.67729 -10.49894 -10.46734 -10.29506 -10.22984 -10.13386 -9.92521 -9.57404 -9.51117 -9.33192 -9.03418 -8.96901 -8.44499 -6.68058 -5.82411 -3.20858 1.09590 2.16829 2.27730 3.05433 3.12921 3.36853 3.44575 3.48074 3.59281 4.10828 4.41428 4.50213 4.61864 4.69650 4.76548 4.89209 4.95272 5.01045 5.11279 5.15407 5.25331 5.26698 5.32183 5.33847 5.43241 5.46170 5.55090 5.59567 5.65214 5.68530 5.77805 5.89419 5.91234 5.92208 6.04592 6.06599 6.22682 6.23790 6.28848 6.37858 6.51580 6.52034 6.58042 6.64148 6.73407 6.80912 6.96870 7.27318 7.36717 7.52480 7.81407 7.86462 8.03095 8.43480 9.19073 9.84145 10.42473 11.26026 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.002761 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.507670 B =10140.432812 C =11615.476002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.701 5.701 5 C 0.592 3.408 6 O -0.545 6.545 7 C -0.034 4.034 8 C -0.181 4.181 9 C 0.055 3.945 10 C -0.075 4.075 11 C -0.166 4.166 12 C -0.167 4.167 13 N -0.273 5.273 14 N -0.257 5.257 15 C 0.085 3.915 16 C -0.084 4.084 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.590 5.590 20 C -0.259 4.259 21 H 0.063 0.937 22 C 0.008 3.992 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.174 3.826 29 C -0.134 4.134 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.161 0.839 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.054 0.946 48 H 0.253 0.747 49 H 0.074 0.926 50 H 0.018 0.982 51 H 0.047 0.953 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -0.728 -19.928 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.351 5.351 5 C 0.377 3.623 6 O -0.423 6.423 7 C -0.162 4.162 8 C -0.210 4.210 9 C -0.101 4.101 10 C -0.094 4.094 11 C -0.203 4.203 12 C -0.205 4.205 13 N -0.106 5.106 14 N -0.044 5.044 15 C -0.054 4.054 16 C -0.103 4.103 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.313 5.313 20 C -0.388 4.388 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.537 5.537 24 Si 0.723 3.277 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.048 3.952 29 C -0.173 4.173 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.178 0.822 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.036 0.964 51 H 0.066 0.934 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.348 0.737 -20.965 22.228 hybrid contribution 0.786 -0.403 1.147 1.448 sum -6.561 0.334 -19.819 20.879 Atomic orbital electron populations 1.22215 0.95361 1.02084 1.02436 1.21233 0.93782 0.97476 0.83126 0.89481 1.45811 1.66140 1.14196 1.08973 1.16870 0.78120 0.85446 0.81853 1.90764 1.50553 1.17105 1.83858 1.21435 1.10442 0.94245 0.90085 1.22065 1.05564 0.94804 0.98565 1.20977 1.03872 0.92691 0.92576 1.20021 0.98127 0.91183 1.00118 1.23036 1.02719 0.95776 0.98778 1.23009 0.90845 1.03176 1.03429 1.73083 1.16365 0.99097 1.22047 1.45537 1.41572 1.10261 1.07029 1.22361 1.04664 0.75068 1.03355 1.21342 0.97156 0.99176 0.92664 1.22086 0.98793 1.00018 0.95630 1.20894 0.86087 0.96430 0.94626 1.44011 0.99560 1.72288 1.15435 1.19077 1.00187 1.10854 1.08732 0.91904 1.24992 1.00327 0.94724 0.99143 1.70123 1.23744 1.09884 1.49926 0.86469 0.81898 0.79888 0.79487 1.21277 1.21554 1.20537 1.20562 0.98478 0.93079 0.83033 1.22143 0.93684 1.01681 0.99793 0.90958 0.92549 0.92534 0.76185 0.82194 0.86489 0.88110 0.88045 0.88300 0.88577 0.89763 0.88905 0.87017 0.91280 0.92569 0.92128 0.96532 0.92741 0.93688 0.90750 0.96406 0.93415 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.13 37.16 0.34 -1.54 16 2 C 0.15 1.93 2.12 -67.93 -0.14 1.78 16 3 H 0.09 1.31 7.65 -51.93 -0.40 0.91 16 4 N -0.70 -8.44 4.35 -54.96 -0.24 -8.68 16 5 C 0.59 7.94 7.75 -12.64 -0.10 7.84 16 6 O -0.54 -8.44 14.38 5.26 0.08 -8.37 16 7 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 8 C -0.18 -2.03 9.79 -38.98 -0.38 -2.41 16 9 C 0.05 0.64 6.85 -82.47 -0.57 0.07 16 10 C -0.07 -0.68 6.33 -91.77 -0.58 -1.26 16 11 C -0.17 -1.24 10.03 -26.69 -0.27 -1.51 16 12 C -0.17 -1.37 10.24 -26.70 -0.27 -1.64 16 13 N -0.27 -3.52 11.90 33.64 0.40 -3.12 16 14 N -0.26 -3.20 3.75 -63.89 -0.24 -3.44 16 15 C 0.09 0.81 10.82 59.85 0.65 1.46 16 16 C -0.08 -1.25 1.79 -90.57 -0.16 -1.41 16 17 C -0.13 -2.00 5.04 -26.61 -0.13 -2.13 16 18 C 0.15 2.92 6.52 -3.70 -0.02 2.90 16 19 N -0.59 -14.34 2.98 -172.57 -0.51 -14.85 16 20 C -0.26 -7.03 9.51 -15.06 -0.14 -7.18 16 21 H 0.06 1.69 7.94 -52.49 -0.42 1.27 16 22 C 0.01 0.21 4.71 -17.43 -0.08 0.13 16 23 N -0.89 -25.66 11.77 55.49 0.65 -25.01 16 24 Si 0.89 21.49 29.62 -169.99 -5.03 16.45 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 3.95 5.33 -3.93 -0.02 3.93 16 29 C -0.13 -2.36 5.21 -26.83 -0.14 -2.50 16 30 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.15 7.41 -40.82 -0.30 3.85 16 34 H 0.16 1.40 7.01 -52.48 -0.37 1.03 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.77 7.22 -51.93 -0.37 0.39 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 1.12 6.33 -51.93 -0.33 0.79 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.07 1.92 6.39 -51.93 -0.33 1.58 16 50 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 51 H 0.05 0.75 7.40 -51.93 -0.38 0.37 16 52 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -32.08 410.34 -9.92 -42.00 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.61 Total: 3.29 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.60 Total: -4.47 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.06 Total: -55.10 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.08 -9.92 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997599073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.119 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds