Wall clock time and date at job start Wed Apr 1 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47112 * 2 1 4 4 N 1.46503 * 109.47467 * 239.99830 * 2 1 3 5 5 C 1.34772 * 119.99974 * 84.99864 * 4 2 1 6 6 O 1.21625 * 120.00145 * 354.95813 * 5 4 2 7 7 C 1.47165 * 120.00136 * 174.96206 * 5 4 2 8 8 C 1.38404 * 126.88173 * 4.46817 * 7 5 4 9 9 C 1.39675 * 105.35878 * 180.02562 * 8 7 5 10 10 C 1.50701 * 126.07099 * 179.97438 * 9 8 7 11 11 C 1.53006 * 117.49644 * 343.74431 * 10 9 8 12 12 C 1.52997 * 117.49603 * 275.08808 * 10 9 8 13 13 N 1.30858 * 107.86109 * 0.02562 * 9 8 7 14 14 N 1.28447 * 110.92634 * 359.71191 * 13 9 8 15 15 C 1.46499 * 125.18823 * 180.27369 * 14 13 9 16 16 C 1.53007 * 109.47080 * 119.99958 * 2 1 3 17 17 C 1.53037 * 109.45626 * 299.99737 * 16 2 1 18 18 C 1.53197 * 109.31132 * 178.61504 * 17 16 2 19 19 N 1.46933 * 108.77487 * 54.63576 * 18 17 16 20 20 C 1.36935 * 120.62768 * 126.36757 * 19 18 17 21 21 H 1.07995 * 120.00489 * 330.79339 * 20 19 18 22 22 C 1.38816 * 119.99750 * 150.79139 * 20 19 18 23 23 N 1.31617 * 119.99743 * 336.24054 * 22 20 19 24 24 Si 1.86802 * 119.99835 * 155.96038 * 22 20 19 25 25 H 1.48494 * 109.46984 * 84.99983 * 24 22 20 26 26 H 1.48505 * 109.46981 * 205.00024 * 24 22 20 27 27 H 1.48497 * 109.46940 * 324.99998 * 24 22 20 28 28 C 1.46920 * 118.73839 * 306.64627 * 19 18 17 29 29 C 1.52769 * 109.01155 * 53.30727 * 28 19 18 30 30 H 1.09000 * 109.47004 * 300.00060 * 1 2 3 31 31 H 1.08999 * 109.47125 * 60.00553 * 1 2 3 32 32 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00119 * 265.00160 * 4 2 1 34 34 H 1.08003 * 127.32486 * 0.02585 * 8 7 5 35 35 H 1.08993 * 115.55115 * 129.41345 * 10 9 8 36 36 H 1.09002 * 117.49620 * 0.02562 * 11 10 9 37 37 H 1.09007 * 117.49519 * 145.01978 * 11 10 9 38 38 H 1.09003 * 117.49720 * 214.97607 * 12 10 9 39 39 H 1.08995 * 117.50394 * 359.97291 * 12 10 9 40 40 H 1.08995 * 109.47555 * 268.39163 * 15 14 13 41 41 H 1.09000 * 109.47628 * 28.39594 * 15 14 13 42 42 H 1.08999 * 109.47098 * 148.39614 * 15 14 13 43 43 H 1.08997 * 109.46267 * 59.97789 * 16 2 1 44 44 H 1.09004 * 109.49844 * 58.66685 * 17 16 2 45 45 H 1.09001 * 109.49961 * 298.56565 * 17 16 2 46 46 H 1.09003 * 109.58576 * 294.85462 * 18 17 16 47 47 H 1.08992 * 109.58935 * 174.42661 * 18 17 16 48 48 H 0.97002 * 119.99609 * 179.72164 * 23 22 20 49 49 H 1.08997 * 109.59204 * 173.14468 * 28 19 18 50 50 H 1.09007 * 109.58857 * 293.56675 * 28 19 18 51 51 H 1.08995 * 109.56282 * 185.55548 * 29 28 19 52 52 H 1.08993 * 109.35485 * 65.49621 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.7722 1.1360 -2.4362 7 6 2.7412 -0.6809 -3.5292 8 6 3.1339 -2.0047 -3.6247 9 6 3.6325 -2.1499 -4.9214 10 6 4.1887 -3.4154 -5.5215 11 6 4.5713 -4.5438 -4.5616 12 6 5.6631 -3.7315 -5.2624 13 7 3.5319 -0.9918 -5.5221 14 7 3.0115 -0.1140 -4.7421 15 6 2.7512 1.2831 -5.0978 16 6 2.0400 -0.7213 1.2493 17 6 1.5297 0.0005 2.4986 18 6 2.0135 -0.7442 3.7470 19 7 3.4753 -0.8771 3.6816 20 6 4.2616 -0.4508 4.7185 21 1 3.9344 0.3666 5.3438 22 6 5.4794 -1.0695 4.9658 23 7 5.6849 -2.3042 4.5588 24 14 6.8292 -0.1470 5.8695 25 1 6.6251 -0.2811 7.3343 26 1 8.1503 -0.7154 5.4996 27 1 6.7850 1.2888 5.4930 28 6 4.0777 -1.4702 2.4800 29 6 3.5704 -0.7225 1.2481 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 3.0687 -2.7640 -2.8594 35 1 3.7763 -3.6970 -6.4903 36 1 4.4202 -4.3709 -3.4960 37 1 4.4108 -5.5678 -4.8991 38 1 6.2206 -4.2214 -6.0607 39 1 6.2309 -3.0240 -4.6583 40 1 3.6124 1.8937 -4.8266 41 1 2.5760 1.3583 -6.1710 42 1 1.8714 1.6370 -4.5604 43 1 1.6763 -1.7488 1.2494 44 1 0.4399 0.0215 2.4870 45 1 1.9137 1.0205 2.5118 46 1 1.5578 -1.7338 3.7816 47 1 1.7372 -0.1811 4.6383 48 1 6.5374 -2.7351 4.7281 49 1 5.1630 -1.3861 2.5356 50 1 3.7938 -2.5203 2.4092 51 1 3.9331 -1.2161 0.3466 52 1 3.9351 0.3043 1.2732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997599073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:31 Heat of formation + Delta-G solvation = 60.849802 kcal Electronic energy + Delta-G solvation = -30980.772521 eV Core-core repulsion = 26982.283048 eV Total energy + Delta-G solvation = -3998.489473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.64446 -40.93238 -39.36820 -38.09046 -36.83126 -34.72828 -33.91066 -33.04384 -31.87478 -31.66865 -30.10587 -28.22070 -27.14434 -25.41459 -24.42276 -23.78220 -23.54924 -23.13265 -22.02026 -21.49500 -20.91054 -20.23216 -18.96538 -18.56179 -17.47249 -17.34532 -16.87127 -16.77275 -16.37607 -15.79630 -15.74841 -15.36159 -15.30875 -15.19348 -14.87319 -14.78607 -14.72358 -14.29863 -14.00902 -13.79759 -13.60928 -13.45046 -13.26915 -13.01513 -12.90496 -12.75156 -12.64019 -12.37778 -12.29830 -12.21998 -12.08737 -11.98897 -11.79712 -11.53346 -11.47435 -11.33573 -11.16646 -11.08904 -10.99835 -10.50291 -10.35268 -10.02620 -9.81407 -8.65697 -7.89252 -5.29986 0.15358 1.31763 1.42202 1.44259 1.47403 1.56220 2.07566 2.16324 2.51556 2.93386 3.23654 3.34026 3.51903 3.69387 3.75986 3.89871 3.97569 4.03726 4.06342 4.13957 4.21668 4.26344 4.37606 4.42149 4.47137 4.48759 4.55905 4.59297 4.60527 4.75617 4.76915 4.83645 4.86532 4.93242 5.00634 5.06873 5.07595 5.12508 5.21983 5.24525 5.30413 5.32595 5.40430 5.41250 5.44781 5.45813 5.52995 5.66614 5.68782 5.76341 6.37835 6.39913 6.96273 7.05281 7.16108 7.89210 8.41244 9.16421 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.002761 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.507670 B =10140.432812 C =11615.476002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.069 0.931 4 N -0.693 5.693 5 C 0.593 3.407 6 O -0.569 6.569 7 C -0.052 4.052 8 C -0.177 4.177 9 C 0.046 3.954 10 C -0.087 4.087 11 C -0.154 4.154 12 C -0.170 4.170 13 N -0.291 5.291 14 N -0.265 5.265 15 C 0.082 3.918 16 C -0.073 4.073 17 C -0.115 4.115 18 C 0.140 3.860 19 N -0.610 5.610 20 C -0.269 4.269 21 H 0.060 0.940 22 C -0.043 4.043 23 N -0.925 5.925 24 Si 0.954 3.046 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.276 1.276 28 C 0.181 3.819 29 C -0.119 4.119 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.183 0.817 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.019 0.981 47 H 0.050 0.950 48 H 0.250 0.750 49 H 0.035 0.965 50 H 0.004 0.996 51 H 0.068 0.932 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 -1.163 -20.851 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.087 0.913 4 N -0.344 5.344 5 C 0.379 3.621 6 O -0.449 6.449 7 C -0.180 4.180 8 C -0.205 4.205 9 C -0.110 4.110 10 C -0.107 4.107 11 C -0.191 4.191 12 C -0.207 4.207 13 N -0.125 5.125 14 N -0.053 5.053 15 C -0.057 4.057 16 C -0.092 4.092 17 C -0.154 4.154 18 C 0.015 3.985 19 N -0.334 5.334 20 C -0.399 4.399 21 H 0.078 0.922 22 C -0.239 4.239 23 N -0.570 5.570 24 Si 0.782 3.218 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.201 1.201 28 C 0.055 3.945 29 C -0.158 4.158 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.200 0.800 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.054 0.946 50 H 0.022 0.978 51 H 0.086 0.914 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.453 0.305 -21.891 23.468 hybrid contribution 1.103 -0.284 1.436 1.833 sum -7.351 0.021 -20.454 21.735 Atomic orbital electron populations 1.22160 0.93571 1.03109 1.02599 1.21000 0.94974 0.96157 0.82438 0.91303 1.45702 1.65778 1.14605 1.08322 1.16960 0.77758 0.85116 0.82231 1.90751 1.51681 1.18186 1.84311 1.21481 1.11448 0.94956 0.90132 1.22391 1.04483 0.94691 0.98975 1.21460 1.03508 0.93146 0.92853 1.20140 0.98707 0.90826 1.00995 1.23142 1.01253 0.96228 0.98478 1.23049 0.90548 1.03220 1.03925 1.73069 1.16995 0.99758 1.22678 1.45803 1.41542 1.10945 1.06975 1.22490 1.04540 0.74117 1.04569 1.21214 0.94715 1.00094 0.93204 1.21955 1.00862 0.98726 0.93839 1.21076 0.83699 0.97005 0.96727 1.44298 1.01363 1.72383 1.15336 1.19379 1.00926 1.10508 1.09093 0.92194 1.25678 1.02190 0.95383 1.00669 1.70232 1.23871 1.11131 1.51756 0.85510 0.79100 0.78693 0.78469 1.20801 1.21831 1.20118 1.20396 0.96336 0.92981 0.84744 1.21927 0.95968 0.99919 0.98018 0.90020 0.93188 0.91044 0.74975 0.79966 0.85629 0.88194 0.86105 0.86727 0.90061 0.89314 0.86942 0.87663 0.89944 0.88966 0.93069 0.96340 0.93127 0.94122 0.94617 0.97795 0.91385 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.13 71.98 0.66 -2.47 16 2 C 0.16 3.78 2.12 44.99 0.10 3.88 16 3 H 0.07 1.96 7.65 -2.39 -0.02 1.94 16 4 N -0.69 -15.30 4.35 -446.06 -1.94 -17.24 16 5 C 0.59 15.23 7.75 86.59 0.67 15.90 16 6 O -0.57 -17.28 14.38 -4.11 -0.06 -17.34 16 7 C -0.05 -1.26 6.96 40.79 0.28 -0.97 16 8 C -0.18 -3.68 9.79 22.66 0.22 -3.46 16 9 C 0.05 1.02 6.85 43.05 0.30 1.31 16 10 C -0.09 -1.44 6.33 -11.54 -0.07 -1.51 16 11 C -0.15 -1.96 10.03 30.62 0.31 -1.66 16 12 C -0.17 -2.52 10.24 30.62 0.31 -2.21 16 13 N -0.29 -7.31 11.90 -47.49 -0.57 -7.88 16 14 N -0.27 -6.44 3.75 -356.04 -1.33 -7.78 16 15 C 0.08 1.52 10.82 127.77 1.38 2.91 16 16 C -0.07 -2.01 1.79 -10.76 -0.02 -2.03 16 17 C -0.11 -3.39 5.04 30.67 0.15 -3.24 16 18 C 0.14 5.47 6.52 86.36 0.56 6.03 16 19 N -0.61 -29.84 2.98 -699.90 -2.09 -31.93 16 20 C -0.27 -14.78 9.51 84.03 0.80 -13.98 16 21 H 0.06 3.25 7.94 -2.91 -0.02 3.23 16 22 C -0.04 -2.38 4.71 84.86 0.40 -1.98 16 23 N -0.92 -54.34 11.77 21.65 0.25 -54.08 16 24 Si 0.95 44.86 29.62 68.60 2.03 46.89 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 C 0.18 8.31 5.33 86.22 0.46 8.77 16 29 C -0.12 -4.12 5.21 30.53 0.16 -3.96 16 30 H 0.08 1.49 6.40 -2.39 -0.02 1.47 16 31 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 7.43 7.41 -92.71 -0.69 6.74 16 34 H 0.18 2.75 7.01 -2.91 -0.02 2.73 16 35 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 1.30 7.22 -2.39 -0.02 1.28 16 37 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 2.10 6.33 -2.39 -0.02 2.08 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.09 2.11 6.36 -2.38 -0.02 2.10 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 48 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.04 1.89 6.39 -2.39 -0.02 1.88 16 50 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 51 H 0.07 2.05 7.40 -2.39 -0.02 2.03 16 52 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.53 410.34 3.20 -67.32 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.23 Total: 20.69 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 6.67 Total: 1.34 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -5.67 Total: -118.91 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.06 Total: -17.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.53 3.20 -67.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997599073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.175 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds