Wall clock time and date at job start Wed Apr 1 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 N 1.46501 * 109.46777 * 240.00267 * 2 1 3 5 5 C 1.34775 * 120.00118 * 85.00068 * 4 2 1 6 6 O 1.21604 * 120.00002 * 359.97438 * 5 4 2 7 7 C 1.47437 * 119.99811 * 179.97438 * 5 4 2 8 8 C 1.38033 * 126.41761 * 0.04102 * 7 5 4 9 9 N 1.34259 * 107.41920 * 179.97438 * 8 7 5 10 10 C 1.46501 * 125.75375 * 180.02562 * 9 8 7 11 11 N 1.39931 * 108.48935 * 359.97438 * 9 8 7 12 12 C 1.30447 * 108.90080 * 0.02562 * 11 9 8 13 13 C 1.50697 * 125.99173 * 180.02562 * 12 11 9 14 14 C 1.53002 * 117.49666 * 8.60002 * 13 12 11 15 15 C 1.53005 * 60.00198 * 252.50972 * 14 13 12 16 16 C 1.52997 * 109.47293 * 120.00571 * 2 1 3 17 17 C 1.53039 * 109.46321 * 60.02431 * 16 2 1 18 18 C 1.53196 * 109.31145 * 178.60226 * 17 16 2 19 19 N 1.46927 * 108.76311 * 54.65423 * 18 17 16 20 20 C 1.36944 * 120.62823 * 126.40566 * 19 18 17 21 21 H 1.07996 * 119.99618 * 332.60816 * 20 19 18 22 22 C 1.38808 * 119.99683 * 152.60675 * 20 19 18 23 23 N 1.31621 * 119.99696 * 159.34815 * 22 20 19 24 24 Si 1.86797 * 120.00249 * 339.34438 * 22 20 19 25 25 H 1.48497 * 109.47226 * 92.94578 * 24 22 20 26 26 H 1.48503 * 109.46893 * 212.94348 * 24 22 20 27 27 H 1.48502 * 109.47268 * 332.94212 * 24 22 20 28 28 C 1.46929 * 118.74173 * 306.38233 * 19 18 17 29 29 C 1.53042 * 109.45664 * 299.96638 * 16 2 1 30 30 H 1.09001 * 109.46874 * 299.99697 * 1 2 3 31 31 H 1.08996 * 109.47314 * 60.00338 * 1 2 3 32 32 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 33 33 H 0.97008 * 120.00146 * 264.99785 * 4 2 1 34 34 H 1.08003 * 126.29332 * 359.94323 * 8 7 5 35 35 H 1.08999 * 109.47128 * 269.99276 * 10 9 8 36 36 H 1.09004 * 109.47484 * 29.99848 * 10 9 8 37 37 H 1.09006 * 109.47220 * 150.00082 * 10 9 8 38 38 H 1.08993 * 115.54994 * 154.30325 * 13 12 11 39 39 H 1.09003 * 117.50213 * 359.97438 * 14 13 12 40 40 H 1.08998 * 117.50146 * 145.02008 * 14 13 12 41 41 H 1.08994 * 117.50102 * 252.51545 * 15 14 13 42 42 H 1.08999 * 117.51617 * 107.47742 * 15 14 13 43 43 H 1.09004 * 109.45718 * 180.02562 * 16 2 1 44 44 H 1.08998 * 109.49370 * 298.56716 * 17 16 2 45 45 H 1.09004 * 109.49640 * 58.66458 * 17 16 2 46 46 H 1.09003 * 109.59718 * 294.86745 * 18 17 16 47 47 H 1.08994 * 109.70084 * 174.50462 * 18 17 16 48 48 H 0.97003 * 120.00125 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.58501 * 293.82431 * 28 19 18 50 50 H 1.09005 * 109.70192 * 173.46776 * 28 19 18 51 51 H 1.09002 * 109.50016 * 301.34281 * 29 16 2 52 52 H 1.09008 * 109.49309 * 61.43960 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1616 -2.4119 7 6 2.6389 -0.7131 -3.5609 8 6 3.0031 -2.0416 -3.6488 9 7 3.3904 -2.2693 -4.9140 10 6 3.8579 -3.5507 -5.4486 11 7 3.2710 -1.0767 -5.6361 12 6 2.8249 -0.1440 -4.8407 13 6 2.5544 1.2891 -5.2204 14 6 2.6292 1.6527 -6.7047 15 6 3.7301 2.1142 -5.7476 16 6 2.0401 -0.7214 1.2491 17 6 1.5304 -2.1644 1.2485 18 6 2.0716 -2.8934 2.4824 19 7 1.7088 -2.1260 3.6817 20 6 1.0457 -2.7252 4.7193 21 1 0.4080 -3.5765 4.5327 22 6 1.1933 -2.2382 6.0107 23 7 0.2891 -2.5158 6.9260 24 14 2.6752 -1.1892 6.4498 25 1 2.3333 0.2460 6.2807 26 1 3.0608 -1.4433 7.8612 27 1 3.8096 -1.5364 5.5565 28 6 2.0714 -0.7036 3.7468 29 6 1.5305 0.0007 2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 2.9810 -2.7650 -2.8471 35 1 4.9392 -3.6209 -5.3304 36 1 3.3794 -4.3667 -4.9071 37 1 3.6031 -3.6177 -6.5064 38 1 1.8105 1.8040 -4.6126 39 1 2.8745 0.8556 -7.4065 40 1 1.9343 2.4071 -7.0737 41 1 3.7594 3.1721 -5.4869 42 1 4.6993 1.6206 -5.8194 43 1 3.1301 -0.7208 1.2491 44 1 0.4407 -2.1652 1.2740 45 1 1.8742 -2.6712 0.3468 46 1 3.1566 -2.9726 2.4137 47 1 1.6354 -3.8905 2.5408 48 1 0.3920 -2.1752 7.8285 49 1 3.1563 -0.6043 3.7811 50 1 1.6348 -0.2535 4.6385 51 1 1.8742 1.0350 2.4867 52 1 0.4407 -0.0209 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997605390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:45 Heat of formation + Delta-G solvation = 86.100185 kcal Electronic energy + Delta-G solvation = -30882.998732 eV Core-core repulsion = 26885.604198 eV Total energy + Delta-G solvation = -3997.394534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.75651 -39.67906 -38.10842 -37.32793 -35.41279 -33.39673 -32.91438 -31.60452 -30.54416 -30.26352 -28.95143 -27.61665 -25.53098 -24.11148 -23.26038 -22.91741 -22.58534 -22.23396 -20.93300 -20.13766 -19.56779 -18.83608 -17.95766 -16.72396 -16.40514 -16.06568 -15.88009 -15.61436 -15.11107 -14.88512 -14.77538 -14.45863 -14.19713 -14.02273 -13.63123 -13.46958 -13.30402 -13.18387 -13.06258 -12.96466 -12.53696 -12.20671 -12.10441 -11.86330 -11.74875 -11.73759 -11.66488 -11.30823 -11.05854 -11.02582 -10.69386 -10.59363 -10.58058 -10.43357 -10.11309 -9.88704 -9.73132 -9.58619 -9.50238 -9.42058 -9.08363 -8.80116 -8.60965 -6.97478 -5.95281 -3.30784 1.21465 1.85714 1.97745 3.25210 3.32304 3.35956 3.48415 3.51054 3.79393 3.97024 4.18613 4.42358 4.52834 4.64650 4.68160 4.81696 4.86224 4.90083 4.92882 4.96342 5.06460 5.13544 5.19005 5.22130 5.40271 5.43751 5.45312 5.56332 5.59884 5.64096 5.78115 5.87205 5.93768 5.94730 6.03279 6.04765 6.12162 6.15179 6.19117 6.26246 6.37653 6.43469 6.48573 6.49998 6.57807 6.64395 6.69484 6.71458 6.99968 7.26855 7.60287 7.96331 8.32275 8.32486 8.94242 9.72194 10.10340 11.20743 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002312 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.590968 B =12108.666532 C =12871.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.721 5.721 5 C 0.593 3.407 6 O -0.543 6.543 7 C -0.280 4.280 8 C 0.099 3.901 9 N -0.361 5.361 10 C 0.097 3.903 11 N -0.301 5.301 12 C 0.163 3.837 13 C -0.081 4.081 14 C -0.169 4.169 15 C -0.159 4.159 16 C -0.086 4.086 17 C -0.130 4.130 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.259 4.259 21 H 0.085 0.915 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.883 3.117 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.126 3.874 29 C -0.127 4.127 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.394 0.606 34 H 0.184 0.816 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.055 0.945 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 1.292 -26.659 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.373 5.373 5 C 0.381 3.619 6 O -0.421 6.421 7 C -0.295 4.295 8 C -0.053 4.053 9 N -0.139 5.139 10 C -0.044 4.044 11 N -0.122 5.122 12 C -0.004 4.004 13 C -0.101 4.101 14 C -0.207 4.207 15 C -0.198 4.198 16 C -0.106 4.106 17 C -0.169 4.169 18 C 0.023 3.977 19 N -0.329 5.329 20 C -0.387 4.387 21 H 0.102 0.898 22 C -0.177 4.177 23 N -0.552 5.552 24 Si 0.714 3.286 25 H -0.216 1.216 26 H -0.233 1.233 27 H -0.197 1.197 28 C 0.000 4.000 29 C -0.167 4.167 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.201 0.799 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.158 0.842 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.091 0.909 51 H 0.074 0.926 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.909 1.658 -27.752 28.647 hybrid contribution 0.749 0.006 1.327 1.523 sum 7.657 1.664 -26.425 27.562 Atomic orbital electron populations 1.22239 0.95260 1.02416 1.02220 1.21048 0.94283 0.96953 0.83215 0.89672 1.46042 1.67725 1.13837 1.09685 1.17209 0.76873 0.86035 0.81807 1.90725 1.51151 1.15421 1.84762 1.20251 1.19337 0.93688 0.96206 1.23114 0.96444 0.97079 0.88631 1.48261 1.49108 1.09435 1.07083 1.22008 1.00821 0.79767 1.01814 1.77122 1.25263 0.90450 1.19366 1.21425 0.94561 0.94388 0.89990 1.20530 1.03401 0.88500 0.97639 1.23009 1.02097 1.03540 0.92045 1.22954 0.93722 1.00065 1.03013 1.21317 1.00059 0.95817 0.93368 1.22118 1.01745 0.94840 0.98227 1.20899 0.96275 0.94632 0.85908 1.44339 1.67442 1.04112 1.17021 1.18909 1.20112 1.14753 0.84939 0.89788 1.25280 0.97917 0.98806 0.95649 1.69839 1.33425 1.48044 1.03877 0.86946 0.85479 0.79627 0.76556 1.21592 1.23253 1.19658 1.21326 0.96737 0.85352 0.96551 1.22082 1.01781 0.97915 0.94921 0.91111 0.92754 0.92113 0.77049 0.79929 0.90177 0.88886 0.88875 0.84238 0.88246 0.88283 0.88030 0.88902 0.91315 0.91154 0.93491 0.96260 0.91996 0.92796 0.95896 0.90920 0.92620 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.78 37.16 0.33 -1.81 16 2 C 0.15 1.94 2.40 -67.93 -0.16 1.78 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 N -0.72 -8.27 4.99 -54.88 -0.27 -8.55 16 5 C 0.59 7.86 7.78 -12.51 -0.10 7.76 16 6 O -0.54 -8.80 14.66 5.27 0.08 -8.73 16 7 C -0.28 -3.26 6.13 -105.07 -0.64 -3.91 16 8 C 0.10 0.83 10.99 -16.57 -0.18 0.65 16 9 N -0.36 -3.09 3.98 -67.60 -0.27 -3.36 16 10 C 0.10 0.38 11.44 59.85 0.68 1.07 16 11 N -0.30 -3.44 12.08 33.89 0.41 -3.03 16 12 C 0.16 1.99 6.80 -82.02 -0.56 1.44 16 13 C -0.08 -0.92 5.65 -91.77 -0.52 -1.43 16 14 C -0.17 -1.54 10.14 -26.73 -0.27 -1.81 16 15 C -0.16 -1.51 10.24 -26.72 -0.27 -1.79 16 16 C -0.09 -1.23 2.14 -90.58 -0.19 -1.42 16 17 C -0.13 -1.86 4.81 -26.61 -0.13 -1.98 16 18 C 0.15 2.71 6.52 -3.71 -0.02 2.69 16 19 N -0.61 -13.84 2.77 -172.31 -0.48 -14.31 16 20 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 21 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 22 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 23 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 24 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16 25 H -0.29 -7.01 6.62 56.52 0.37 -6.64 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.27 -6.71 6.63 56.52 0.38 -6.34 16 28 C 0.13 2.66 4.20 -3.71 -0.02 2.65 16 29 C -0.13 -2.14 4.96 -26.61 -0.13 -2.27 16 30 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.78 6.46 -51.93 -0.34 0.44 16 33 H 0.39 3.59 5.77 -40.82 -0.24 3.35 16 34 H 0.18 0.83 7.46 -52.48 -0.39 0.44 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.14 1.75 6.73 -51.93 -0.35 1.40 16 39 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.08 6.51 -51.93 -0.34 0.75 16 45 H 0.05 0.51 6.46 -51.93 -0.34 0.18 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 50 H 0.07 1.71 4.50 -51.93 -0.23 1.47 16 51 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.07 1.25 6.51 -51.92 -0.34 0.91 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -34.69 400.53 -8.61 -43.29 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.31 Total: 2.48 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.43 Total: -5.07 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.16 Total: -56.12 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.69 -8.61 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997605390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.394 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds