Wall clock time and date at job start Wed Apr 1 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 N 1.46501 * 109.46777 * 240.00267 * 2 1 3 5 5 C 1.34775 * 120.00118 * 85.00068 * 4 2 1 6 6 O 1.21604 * 120.00002 * 359.97438 * 5 4 2 7 7 C 1.47437 * 119.99811 * 179.97438 * 5 4 2 8 8 C 1.38033 * 126.41761 * 0.04102 * 7 5 4 9 9 N 1.34259 * 107.41920 * 179.97438 * 8 7 5 10 10 C 1.46501 * 125.75375 * 180.02562 * 9 8 7 11 11 N 1.39931 * 108.48935 * 359.97438 * 9 8 7 12 12 C 1.30447 * 108.90080 * 0.02562 * 11 9 8 13 13 C 1.50697 * 125.99173 * 180.02562 * 12 11 9 14 14 C 1.53002 * 117.49666 * 8.60002 * 13 12 11 15 15 C 1.53005 * 60.00198 * 252.50972 * 14 13 12 16 16 C 1.52997 * 109.47293 * 120.00571 * 2 1 3 17 17 C 1.53039 * 109.46321 * 60.02431 * 16 2 1 18 18 C 1.53196 * 109.31145 * 178.60226 * 17 16 2 19 19 N 1.46927 * 108.76311 * 54.65423 * 18 17 16 20 20 C 1.36944 * 120.62823 * 126.40566 * 19 18 17 21 21 H 1.07996 * 119.99618 * 332.60816 * 20 19 18 22 22 C 1.38808 * 119.99683 * 152.60675 * 20 19 18 23 23 N 1.31621 * 119.99696 * 159.34815 * 22 20 19 24 24 Si 1.86797 * 120.00249 * 339.34438 * 22 20 19 25 25 H 1.48497 * 109.47226 * 92.94578 * 24 22 20 26 26 H 1.48503 * 109.46893 * 212.94348 * 24 22 20 27 27 H 1.48502 * 109.47268 * 332.94212 * 24 22 20 28 28 C 1.46929 * 118.74173 * 306.38233 * 19 18 17 29 29 C 1.53042 * 109.45664 * 299.96638 * 16 2 1 30 30 H 1.09001 * 109.46874 * 299.99697 * 1 2 3 31 31 H 1.08996 * 109.47314 * 60.00338 * 1 2 3 32 32 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 33 33 H 0.97008 * 120.00146 * 264.99785 * 4 2 1 34 34 H 1.08003 * 126.29332 * 359.94323 * 8 7 5 35 35 H 1.08999 * 109.47128 * 269.99276 * 10 9 8 36 36 H 1.09004 * 109.47484 * 29.99848 * 10 9 8 37 37 H 1.09006 * 109.47220 * 150.00082 * 10 9 8 38 38 H 1.08993 * 115.54994 * 154.30325 * 13 12 11 39 39 H 1.09003 * 117.50213 * 359.97438 * 14 13 12 40 40 H 1.08998 * 117.50146 * 145.02008 * 14 13 12 41 41 H 1.08994 * 117.50102 * 252.51545 * 15 14 13 42 42 H 1.08999 * 117.51617 * 107.47742 * 15 14 13 43 43 H 1.09004 * 109.45718 * 180.02562 * 16 2 1 44 44 H 1.08998 * 109.49370 * 298.56716 * 17 16 2 45 45 H 1.09004 * 109.49640 * 58.66458 * 17 16 2 46 46 H 1.09003 * 109.59718 * 294.86745 * 18 17 16 47 47 H 1.08994 * 109.70084 * 174.50462 * 18 17 16 48 48 H 0.97003 * 120.00125 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.58501 * 293.82431 * 28 19 18 50 50 H 1.09005 * 109.70192 * 173.46776 * 28 19 18 51 51 H 1.09002 * 109.50016 * 301.34281 * 29 16 2 52 52 H 1.09008 * 109.49309 * 61.43960 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1616 -2.4119 7 6 2.6389 -0.7131 -3.5609 8 6 3.0031 -2.0416 -3.6488 9 7 3.3904 -2.2693 -4.9140 10 6 3.8579 -3.5507 -5.4486 11 7 3.2710 -1.0767 -5.6361 12 6 2.8249 -0.1440 -4.8407 13 6 2.5544 1.2891 -5.2204 14 6 2.6292 1.6527 -6.7047 15 6 3.7301 2.1142 -5.7476 16 6 2.0401 -0.7214 1.2491 17 6 1.5304 -2.1644 1.2485 18 6 2.0716 -2.8934 2.4824 19 7 1.7088 -2.1260 3.6817 20 6 1.0457 -2.7252 4.7193 21 1 0.4080 -3.5765 4.5327 22 6 1.1933 -2.2382 6.0107 23 7 0.2891 -2.5158 6.9260 24 14 2.6752 -1.1892 6.4498 25 1 2.3333 0.2460 6.2807 26 1 3.0608 -1.4433 7.8612 27 1 3.8096 -1.5364 5.5565 28 6 2.0714 -0.7036 3.7468 29 6 1.5305 0.0007 2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 2.9810 -2.7650 -2.8471 35 1 4.9392 -3.6209 -5.3304 36 1 3.3794 -4.3667 -4.9071 37 1 3.6031 -3.6177 -6.5064 38 1 1.8105 1.8040 -4.6126 39 1 2.8745 0.8556 -7.4065 40 1 1.9343 2.4071 -7.0737 41 1 3.7594 3.1721 -5.4869 42 1 4.6993 1.6206 -5.8194 43 1 3.1301 -0.7208 1.2491 44 1 0.4407 -2.1652 1.2740 45 1 1.8742 -2.6712 0.3468 46 1 3.1566 -2.9726 2.4137 47 1 1.6354 -3.8905 2.5408 48 1 0.3920 -2.1752 7.8285 49 1 3.1563 -0.6043 3.7811 50 1 1.6348 -0.2535 4.6385 51 1 1.8742 1.0350 2.4867 52 1 0.4407 -0.0209 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997605390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:44 Heat of formation + Delta-G solvation = 63.221381 kcal Electronic energy + Delta-G solvation = -30883.990831 eV Core-core repulsion = 26885.604198 eV Total energy + Delta-G solvation = -3998.386633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.47763 -40.76159 -39.38527 -38.07796 -36.80329 -34.48666 -33.97323 -33.15149 -31.85979 -31.45444 -30.10437 -28.15278 -27.07826 -25.25938 -24.64268 -23.94618 -23.37620 -23.16166 -22.32079 -21.09913 -20.46631 -20.01284 -18.88851 -18.51126 -17.31310 -17.23126 -16.69651 -16.55445 -16.26495 -16.01655 -15.69314 -15.59911 -15.46729 -15.23267 -15.03037 -14.88401 -14.47771 -14.10720 -13.94551 -13.80037 -13.60296 -13.52702 -13.48587 -13.21868 -12.92677 -12.84632 -12.52571 -12.43383 -12.29522 -12.13539 -12.02512 -11.97944 -11.75691 -11.67221 -11.48597 -11.36947 -11.18340 -10.99826 -10.74845 -10.63020 -10.22761 -10.05346 -9.55673 -8.87531 -8.13712 -5.43757 0.54289 1.02678 1.31898 1.42312 1.44689 1.51105 2.30579 2.44024 2.45733 3.03204 3.09554 3.32172 3.41665 3.56173 3.78165 3.89325 3.92676 3.98660 4.01036 4.13135 4.24416 4.32055 4.36311 4.41876 4.43683 4.47185 4.53484 4.59396 4.61565 4.71213 4.73598 4.74416 4.77596 4.83010 4.92980 4.95278 5.03138 5.07293 5.14868 5.19393 5.21279 5.24357 5.24509 5.33143 5.36483 5.42263 5.62119 5.70763 5.90822 5.91564 6.16521 6.51946 6.74108 6.97173 7.39859 7.68059 8.08584 9.06301 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002312 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.590968 B =12108.666532 C =12871.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.072 0.928 4 N -0.709 5.709 5 C 0.594 3.406 6 O -0.581 6.581 7 C -0.315 4.315 8 C 0.122 3.878 9 N -0.357 5.357 10 C 0.086 3.914 11 N -0.325 5.325 12 C 0.146 3.854 13 C -0.102 4.102 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.076 4.076 17 C -0.120 4.120 18 C 0.142 3.858 19 N -0.620 5.620 20 C -0.241 4.241 21 H 0.053 0.947 22 C -0.039 4.039 23 N -0.959 5.959 24 Si 0.945 3.055 25 H -0.278 1.278 26 H -0.315 1.315 27 H -0.260 1.260 28 C 0.120 3.880 29 C -0.122 4.122 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.260 0.740 49 H 0.031 0.969 50 H 0.045 0.955 51 H 0.074 0.926 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 0.453 -29.009 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.091 0.909 4 N -0.361 5.361 5 C 0.383 3.617 6 O -0.462 6.462 7 C -0.330 4.330 8 C -0.032 4.032 9 N -0.134 5.134 10 C -0.053 4.053 11 N -0.147 5.147 12 C -0.020 4.020 13 C -0.123 4.123 14 C -0.192 4.192 15 C -0.193 4.193 16 C -0.095 4.095 17 C -0.158 4.158 18 C 0.017 3.983 19 N -0.345 5.345 20 C -0.371 4.371 21 H 0.071 0.929 22 C -0.233 4.233 23 N -0.606 5.606 24 Si 0.775 3.225 25 H -0.205 1.205 26 H -0.244 1.244 27 H -0.184 1.184 28 C -0.005 4.005 29 C -0.161 4.161 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.247 0.753 34 H 0.244 0.756 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.092 0.908 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.868 0.793 -30.178 31.464 hybrid contribution 0.132 0.143 1.946 1.955 sum 9.001 0.935 -28.232 29.647 Atomic orbital electron populations 1.22186 0.95414 1.02534 1.01541 1.20763 0.93971 0.96350 0.83294 0.90939 1.45814 1.67279 1.14349 1.08650 1.17451 0.76200 0.85630 0.82458 1.90706 1.52924 1.17217 1.85378 1.20225 1.22008 0.95311 0.95447 1.23676 0.93703 0.96427 0.89344 1.48672 1.47811 1.09780 1.07136 1.22431 1.02009 0.78454 1.02411 1.77056 1.25995 0.91468 1.20158 1.21586 0.95052 0.94761 0.90649 1.20479 1.04060 0.88913 0.98801 1.23036 1.01862 1.03484 0.90854 1.22986 0.93248 1.00310 1.02720 1.21194 1.00492 0.95408 0.92382 1.22010 1.01008 0.94724 0.98090 1.21144 0.97298 0.94426 0.85421 1.44503 1.67437 1.05307 1.17256 1.18881 1.18794 1.13234 0.86225 0.92894 1.25897 1.00317 1.01246 0.95841 1.69972 1.35448 1.50901 1.04253 0.85931 0.82333 0.78683 0.75567 1.20483 1.24401 1.18439 1.21361 0.96992 0.84580 0.97534 1.21975 1.01127 0.98828 0.94192 0.91688 0.93573 0.91546 0.75342 0.75628 0.88808 0.85712 0.88741 0.86174 0.88486 0.86763 0.87050 0.89234 0.90290 0.92230 0.88975 0.94629 0.92580 0.93148 0.95122 0.93720 0.90789 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 8.78 71.98 0.63 -3.26 16 2 C 0.16 3.79 2.40 44.99 0.11 3.90 16 3 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 4 N -0.71 -14.06 4.99 -445.79 -2.22 -16.28 16 5 C 0.59 14.82 7.78 86.67 0.67 15.49 16 6 O -0.58 -18.85 14.66 -4.04 -0.06 -18.91 16 7 C -0.31 -6.77 6.13 -20.15 -0.12 -6.90 16 8 C 0.12 1.59 10.99 84.27 0.93 2.51 16 9 N -0.36 -5.00 3.98 -367.77 -1.46 -6.46 16 10 C 0.09 0.35 11.44 127.77 1.46 1.81 16 11 N -0.32 -6.97 12.08 -46.68 -0.56 -7.53 16 12 C 0.15 3.46 6.80 43.51 0.30 3.76 16 13 C -0.10 -2.35 5.65 -11.54 -0.07 -2.41 16 14 C -0.16 -2.73 10.14 30.60 0.31 -2.42 16 15 C -0.15 -2.89 10.24 30.60 0.31 -2.57 16 16 C -0.08 -1.90 2.14 -10.77 -0.02 -1.92 16 17 C -0.12 -2.97 4.81 30.67 0.15 -2.82 16 18 C 0.14 4.77 6.52 86.36 0.56 5.33 16 19 N -0.62 -27.61 2.77 -699.08 -1.94 -29.54 16 20 C -0.24 -13.36 10.04 84.03 0.84 -12.51 16 21 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 22 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 23 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 24 Si 0.95 46.45 24.35 68.60 1.67 48.12 16 25 H -0.28 -13.02 6.62 99.48 0.66 -12.37 16 26 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 27 H -0.26 -12.10 6.63 99.48 0.66 -11.44 16 28 C 0.12 4.88 4.20 86.36 0.36 5.24 16 29 C -0.12 -3.83 4.96 30.67 0.15 -3.68 16 30 H 0.06 1.66 6.46 -2.39 -0.02 1.65 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.55 6.46 -2.39 -0.02 1.53 16 33 H 0.41 5.48 5.77 -92.70 -0.53 4.94 16 34 H 0.23 0.69 7.46 -2.91 -0.02 0.67 16 35 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.12 3.18 6.73 -2.39 -0.02 3.16 16 39 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.06 1.66 6.51 -2.39 -0.02 1.64 16 45 H 0.09 1.49 6.46 -2.39 -0.02 1.48 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.06 1.94 7.93 -2.39 -0.02 1.92 16 48 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.03 1.21 7.08 -2.39 -0.02 1.19 16 50 H 0.04 2.06 4.50 -2.38 -0.01 2.05 16 51 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.06 2.08 6.51 -2.38 -0.02 2.07 16 Total: -1.00 -79.27 400.53 3.05 -76.22 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.30 Total: 16.51 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 7.02 Total: -2.24 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.88 Total: -119.71 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.06 Total: -18.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.12 kcal Total: -79.27 3.05 -76.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997605390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.443 kcal (2) G-P(sol) polarization free energy of solvation -79.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds