Wall clock time and date at job start Wed Apr 1 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47374 * 2 1 4 4 N 1.46503 * 109.47370 * 239.99895 * 2 1 3 5 5 C 1.34780 * 119.99917 * 85.00158 * 4 2 1 6 6 O 1.21626 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.47321 * 120.00047 * 180.02562 * 5 4 2 8 8 C 1.36571 * 126.21220 * 180.02562 * 7 5 4 9 9 N 1.34874 * 106.78523 * 179.97438 * 8 7 5 10 10 C 1.36309 * 107.86179 * 0.07926 * 9 8 7 11 11 N 1.29795 * 108.92152 * 359.66389 * 10 9 8 12 12 C 1.51102 * 123.89611 * 179.85946 * 10 9 8 13 13 C 1.53385 * 108.19941 * 344.07609 * 12 10 9 14 14 C 1.53138 * 109.24819 * 48.94538 * 13 12 10 15 15 C 1.46579 * 127.49763 * 180.13323 * 9 8 7 16 16 C 1.52996 * 109.47107 * 119.99697 * 2 1 3 17 17 C 1.53039 * 109.46386 * 300.00223 * 16 2 1 18 18 C 1.53187 * 109.31537 * 181.36936 * 17 16 2 19 19 N 1.46924 * 108.77714 * 305.36663 * 18 17 16 20 20 C 1.36941 * 120.63042 * 233.58961 * 19 18 17 21 21 H 1.08000 * 120.00035 * 27.49064 * 20 19 18 22 22 C 1.38812 * 119.99547 * 207.49672 * 20 19 18 23 23 N 1.31617 * 120.00435 * 18.19652 * 22 20 19 24 24 Si 1.86802 * 119.99734 * 197.91891 * 22 20 19 25 25 H 1.48498 * 109.47188 * 84.85121 * 24 22 20 26 26 H 1.48499 * 109.47180 * 204.85412 * 24 22 20 27 27 H 1.48506 * 109.47075 * 324.85265 * 24 22 20 28 28 C 1.46929 * 118.73893 * 53.85900 * 19 18 17 29 29 C 1.53043 * 109.44650 * 60.06266 * 16 2 1 30 30 H 1.08992 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47436 * 300.00281 * 1 2 3 32 32 H 1.09006 * 109.46960 * 60.00152 * 1 2 3 33 33 H 0.96997 * 120.00169 * 265.00385 * 4 2 1 34 34 H 1.07994 * 126.60544 * 359.89043 * 8 7 5 35 35 H 1.09006 * 109.71621 * 224.39936 * 12 10 9 36 36 H 1.09005 * 109.75432 * 103.77562 * 12 10 9 37 37 H 1.09002 * 109.50978 * 289.01433 * 13 12 10 38 38 H 1.08996 * 109.51101 * 168.87840 * 13 12 10 39 39 H 1.08998 * 109.45942 * 170.17495 * 14 13 12 40 40 H 1.09002 * 109.46052 * 50.20896 * 14 13 12 41 41 H 1.09001 * 109.58300 * 282.58048 * 15 9 8 42 42 H 1.08996 * 109.58411 * 43.00538 * 15 9 8 43 43 H 1.08999 * 109.46133 * 180.02562 * 16 2 1 44 44 H 1.09002 * 109.49807 * 61.41330 * 17 16 2 45 45 H 1.08997 * 109.49604 * 301.32538 * 17 16 2 46 46 H 1.09002 * 109.58741 * 185.57736 * 18 17 16 47 47 H 1.09002 * 109.70527 * 65.22402 * 18 17 16 48 48 H 0.97001 * 120.00020 * 179.72213 * 23 22 20 49 49 H 1.08992 * 109.58381 * 65.93197 * 28 19 18 50 50 H 1.09006 * 109.58258 * 186.35568 * 28 19 18 51 51 H 1.08997 * 109.50083 * 298.57042 * 29 16 2 52 52 H 1.09002 * 109.49820 * 58.67005 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8574 1.1617 -2.4119 7 6 2.6377 -0.7129 -3.5602 8 6 2.8166 -0.1584 -4.7954 9 7 3.2773 -1.1386 -5.5992 10 6 3.3746 -2.2774 -4.8564 11 7 2.9990 -2.0204 -3.6409 12 6 3.8531 -3.6021 -5.4036 13 6 3.8066 -3.5327 -6.9352 14 6 4.4887 -2.2439 -7.4031 15 6 3.6238 -1.0383 -7.0199 16 6 2.0399 -0.7212 1.2492 17 6 1.5297 0.0004 2.4986 18 6 2.0702 -0.7041 3.7469 19 7 1.7079 -2.1264 3.6814 20 6 1.0445 -2.7260 4.7185 21 1 0.4049 -2.1395 5.3614 22 6 1.1942 -4.0875 4.9436 23 7 2.2145 -4.7330 4.4193 24 14 -0.0481 -5.0022 5.9968 25 1 -1.2038 -5.4093 5.1579 26 1 0.5905 -6.2098 6.5793 27 1 -0.5186 -4.1147 7.0906 28 6 2.0763 -2.8948 2.4845 29 6 1.5308 -2.1644 1.2480 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 2.6247 0.8669 -5.0750 35 1 3.2017 -4.4021 -5.0518 36 1 4.8754 -3.7888 -5.0748 37 1 2.7688 -3.5368 -7.2685 38 1 4.3277 -4.3932 -7.3546 39 1 4.6140 -2.2717 -8.4855 40 1 5.4652 -2.1563 -6.9268 41 1 2.7131 -1.0369 -7.6189 42 1 4.1809 -0.1182 -7.1961 43 1 3.1299 -0.7207 1.2493 44 1 0.4399 -0.0212 2.5118 45 1 1.8732 1.0348 2.4871 46 1 1.6312 -0.2559 4.6383 47 1 3.1550 -0.6046 3.7843 48 1 2.3213 -5.6836 4.5799 49 1 3.1616 -2.9703 2.4185 50 1 1.6414 -3.8927 2.5427 51 1 0.4411 -2.1658 1.2729 52 1 1.8752 -2.6709 0.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997609492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:52 Heat of formation + Delta-G solvation = 27.404527 kcal Electronic energy + Delta-G solvation = -30776.220392 eV Core-core repulsion = 26776.280623 eV Total energy + Delta-G solvation = -3999.939768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.63134 -39.58218 -37.87590 -36.84981 -35.13451 -33.78518 -32.74036 -31.09060 -30.11049 -29.83949 -28.95809 -28.57091 -25.49948 -25.03182 -23.71222 -22.66319 -22.58322 -22.11494 -20.43183 -19.82726 -19.40617 -18.54751 -17.75956 -16.67292 -16.47806 -16.42244 -15.72809 -14.91877 -14.79017 -14.76645 -14.48801 -14.44473 -14.11416 -13.98014 -13.91531 -13.72891 -13.54371 -13.29186 -12.89769 -12.61751 -12.37472 -12.23209 -12.05213 -11.73881 -11.64973 -11.56618 -11.48987 -11.40063 -11.08498 -10.74516 -10.66544 -10.41605 -10.38372 -10.09497 -10.04639 -9.96076 -9.89086 -9.74537 -9.44370 -9.24871 -8.83982 -8.54441 -8.38637 -6.59506 -5.71713 -3.12517 1.48343 2.26067 2.30163 3.42783 3.45915 3.49312 3.50218 3.62767 3.81356 4.00793 4.07951 4.13105 4.53331 4.56078 4.66960 4.78477 4.82275 4.98384 5.10013 5.16648 5.20292 5.30146 5.31753 5.33313 5.46399 5.50374 5.51644 5.59689 5.64380 5.79406 5.85635 5.88296 6.00146 6.16762 6.24666 6.28571 6.32148 6.40624 6.47982 6.59769 6.69950 6.75010 6.83113 6.85189 6.88765 6.94753 7.10750 7.47349 7.58519 7.74764 7.86673 7.91154 8.46926 8.52522 9.29018 9.93259 10.50262 11.36648 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002303 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.169460 B =12156.509481 C =13519.458031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.081 0.919 4 N -0.705 5.705 5 C 0.602 3.398 6 O -0.555 6.555 7 C -0.060 4.060 8 C 0.032 3.968 9 N -0.456 5.456 10 C 0.210 3.790 11 N -0.454 5.454 12 C -0.035 4.035 13 C -0.126 4.126 14 C -0.136 4.136 15 C 0.101 3.899 16 C -0.085 4.085 17 C -0.125 4.125 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.249 4.249 21 H 0.065 0.935 22 C 0.000 4.000 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.172 3.828 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.409 0.591 34 H 0.187 0.813 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.087 0.913 51 H 0.060 0.940 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 5.591 -27.404 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.099 0.901 4 N -0.356 5.356 5 C 0.388 3.612 6 O -0.433 6.433 7 C -0.189 4.189 8 C -0.106 4.106 9 N -0.138 5.138 10 C -0.054 4.054 11 N -0.173 5.173 12 C -0.074 4.074 13 C -0.164 4.164 14 C -0.174 4.174 15 C -0.021 4.021 16 C -0.104 4.104 17 C -0.165 4.165 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.046 3.954 29 C -0.176 4.176 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.246 0.754 34 H 0.204 0.796 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.105 0.895 51 H 0.079 0.921 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.074 5.721 -26.833 27.737 hybrid contribution -0.443 -0.327 -0.188 0.582 sum 3.630 5.394 -27.021 27.793 Atomic orbital electron populations 1.22223 0.95461 1.02488 1.01804 1.21106 0.94189 0.96735 0.83779 0.90052 1.46029 1.65691 1.14813 1.09052 1.16891 0.76969 0.85457 0.81854 1.90762 1.52195 1.15272 1.85088 1.20696 1.12205 0.91403 0.94629 1.22403 1.02456 0.95254 0.90531 1.45334 1.48530 1.09413 1.10537 1.23526 1.04695 0.90287 0.86910 1.70419 1.15473 1.14005 1.17429 1.20260 1.02741 0.90040 0.94318 1.21687 1.01876 0.97993 0.94861 1.21911 0.99306 0.93437 1.02705 1.22090 1.00799 1.01008 0.78168 1.21305 1.00021 0.96354 0.92726 1.22064 1.01091 0.97606 0.95725 1.20886 0.96207 0.86320 0.94670 1.44077 1.66648 1.04672 1.16101 1.19193 1.19185 0.91876 1.07627 0.91729 1.25010 0.97138 0.98249 0.99420 1.70044 1.27470 1.08887 1.48363 0.86332 0.81166 0.79374 0.80037 1.21472 1.21844 1.20566 1.20852 0.96238 0.95755 0.82559 1.22359 1.00966 0.94473 0.99779 0.91969 0.91280 0.93040 0.75404 0.79578 0.88281 0.88940 0.91020 0.89708 0.89087 0.90393 0.89401 0.88853 0.91475 0.91739 0.93091 0.92876 0.96635 0.93713 0.96557 0.89521 0.92089 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.78 37.15 0.33 -2.16 16 2 C 0.15 2.33 2.40 -67.93 -0.16 2.17 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -11.19 4.99 -54.91 -0.27 -11.47 16 5 C 0.60 9.87 7.78 -12.56 -0.10 9.77 16 6 O -0.55 -10.19 16.54 5.25 0.09 -10.11 16 7 C -0.06 -0.87 6.98 -82.98 -0.58 -1.45 16 8 C 0.03 0.37 11.32 -16.82 -0.19 0.18 16 9 N -0.46 -4.07 3.11 -113.42 -0.35 -4.43 16 10 C 0.21 2.22 7.64 -154.63 -1.18 1.04 16 11 N -0.45 -6.36 11.00 -7.01 -0.08 -6.44 16 12 C -0.03 -0.23 6.33 -27.49 -0.17 -0.41 16 13 C -0.13 -0.48 5.95 -26.46 -0.16 -0.64 16 14 C -0.14 -0.42 5.93 -26.54 -0.16 -0.57 16 15 C 0.10 0.45 6.96 -3.87 -0.03 0.42 16 16 C -0.08 -1.48 2.14 -90.58 -0.19 -1.67 16 17 C -0.13 -2.22 4.96 -26.61 -0.13 -2.36 16 18 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 19 N -0.59 -15.06 2.99 -172.05 -0.51 -15.58 16 20 C -0.25 -6.94 9.59 -15.06 -0.14 -7.08 16 21 H 0.06 1.77 7.89 -52.49 -0.41 1.36 16 22 C 0.00 0.00 4.89 -17.43 -0.09 -0.08 16 23 N -0.90 -26.60 11.21 55.49 0.62 -25.97 16 24 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.17 4.16 5.35 -3.48 -0.02 4.14 16 29 C -0.14 -2.63 4.83 -26.38 -0.13 -2.76 16 30 H 0.06 0.98 6.46 -51.93 -0.34 0.64 16 31 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.41 6.45 6.55 -40.82 -0.27 6.18 16 34 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.16 6.51 -51.93 -0.34 0.82 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.35 6.03 -51.93 -0.31 2.04 16 51 H 0.06 1.21 6.51 -51.93 -0.34 0.87 16 52 H 0.04 0.80 6.46 -51.93 -0.34 0.47 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -34.28 399.65 -11.18 -45.46 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.53 Total: 3.86 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.13 Total: 1.63 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.60 Total: -63.88 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.28 -11.18 -45.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997609492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.861 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds