Wall clock time and date at job start Wed Apr 1 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47374 * 2 1 4 4 N 1.46503 * 109.47370 * 239.99895 * 2 1 3 5 5 C 1.34780 * 119.99917 * 85.00158 * 4 2 1 6 6 O 1.21626 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.47321 * 120.00047 * 180.02562 * 5 4 2 8 8 C 1.36571 * 126.21220 * 180.02562 * 7 5 4 9 9 N 1.34874 * 106.78523 * 179.97438 * 8 7 5 10 10 C 1.36309 * 107.86179 * 0.07926 * 9 8 7 11 11 N 1.29795 * 108.92152 * 359.66389 * 10 9 8 12 12 C 1.51102 * 123.89611 * 179.85946 * 10 9 8 13 13 C 1.53385 * 108.19941 * 344.07609 * 12 10 9 14 14 C 1.53138 * 109.24819 * 48.94538 * 13 12 10 15 15 C 1.46579 * 127.49763 * 180.13323 * 9 8 7 16 16 C 1.52996 * 109.47107 * 119.99697 * 2 1 3 17 17 C 1.53039 * 109.46386 * 300.00223 * 16 2 1 18 18 C 1.53187 * 109.31537 * 181.36936 * 17 16 2 19 19 N 1.46924 * 108.77714 * 305.36663 * 18 17 16 20 20 C 1.36941 * 120.63042 * 233.58961 * 19 18 17 21 21 H 1.08000 * 120.00035 * 27.49064 * 20 19 18 22 22 C 1.38812 * 119.99547 * 207.49672 * 20 19 18 23 23 N 1.31617 * 120.00435 * 18.19652 * 22 20 19 24 24 Si 1.86802 * 119.99734 * 197.91891 * 22 20 19 25 25 H 1.48498 * 109.47188 * 84.85121 * 24 22 20 26 26 H 1.48499 * 109.47180 * 204.85412 * 24 22 20 27 27 H 1.48506 * 109.47075 * 324.85265 * 24 22 20 28 28 C 1.46929 * 118.73893 * 53.85900 * 19 18 17 29 29 C 1.53043 * 109.44650 * 60.06266 * 16 2 1 30 30 H 1.08992 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47436 * 300.00281 * 1 2 3 32 32 H 1.09006 * 109.46960 * 60.00152 * 1 2 3 33 33 H 0.96997 * 120.00169 * 265.00385 * 4 2 1 34 34 H 1.07994 * 126.60544 * 359.89043 * 8 7 5 35 35 H 1.09006 * 109.71621 * 224.39936 * 12 10 9 36 36 H 1.09005 * 109.75432 * 103.77562 * 12 10 9 37 37 H 1.09002 * 109.50978 * 289.01433 * 13 12 10 38 38 H 1.08996 * 109.51101 * 168.87840 * 13 12 10 39 39 H 1.08998 * 109.45942 * 170.17495 * 14 13 12 40 40 H 1.09002 * 109.46052 * 50.20896 * 14 13 12 41 41 H 1.09001 * 109.58300 * 282.58048 * 15 9 8 42 42 H 1.08996 * 109.58411 * 43.00538 * 15 9 8 43 43 H 1.08999 * 109.46133 * 180.02562 * 16 2 1 44 44 H 1.09002 * 109.49807 * 61.41330 * 17 16 2 45 45 H 1.08997 * 109.49604 * 301.32538 * 17 16 2 46 46 H 1.09002 * 109.58741 * 185.57736 * 18 17 16 47 47 H 1.09002 * 109.70527 * 65.22402 * 18 17 16 48 48 H 0.97001 * 120.00020 * 179.72213 * 23 22 20 49 49 H 1.08992 * 109.58381 * 65.93197 * 28 19 18 50 50 H 1.09006 * 109.58258 * 186.35568 * 28 19 18 51 51 H 1.08997 * 109.50083 * 298.57042 * 29 16 2 52 52 H 1.09002 * 109.49820 * 58.67005 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8574 1.1617 -2.4119 7 6 2.6377 -0.7129 -3.5602 8 6 2.8166 -0.1584 -4.7954 9 7 3.2773 -1.1386 -5.5992 10 6 3.3746 -2.2774 -4.8564 11 7 2.9990 -2.0204 -3.6409 12 6 3.8531 -3.6021 -5.4036 13 6 3.8066 -3.5327 -6.9352 14 6 4.4887 -2.2439 -7.4031 15 6 3.6238 -1.0383 -7.0199 16 6 2.0399 -0.7212 1.2492 17 6 1.5297 0.0004 2.4986 18 6 2.0702 -0.7041 3.7469 19 7 1.7079 -2.1264 3.6814 20 6 1.0445 -2.7260 4.7185 21 1 0.4049 -2.1395 5.3614 22 6 1.1942 -4.0875 4.9436 23 7 2.2145 -4.7330 4.4193 24 14 -0.0481 -5.0022 5.9968 25 1 -1.2038 -5.4093 5.1579 26 1 0.5905 -6.2098 6.5793 27 1 -0.5186 -4.1147 7.0906 28 6 2.0763 -2.8948 2.4845 29 6 1.5308 -2.1644 1.2480 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 2.6247 0.8669 -5.0750 35 1 3.2017 -4.4021 -5.0518 36 1 4.8754 -3.7888 -5.0748 37 1 2.7688 -3.5368 -7.2685 38 1 4.3277 -4.3932 -7.3546 39 1 4.6140 -2.2717 -8.4855 40 1 5.4652 -2.1563 -6.9268 41 1 2.7131 -1.0369 -7.6189 42 1 4.1809 -0.1182 -7.1961 43 1 3.1299 -0.7207 1.2493 44 1 0.4399 -0.0212 2.5118 45 1 1.8732 1.0348 2.4871 46 1 1.6312 -0.2559 4.6383 47 1 3.1550 -0.6046 3.7843 48 1 2.3213 -5.6836 4.5799 49 1 3.1616 -2.9703 2.4185 50 1 1.6414 -3.8927 2.5427 51 1 0.4411 -2.1658 1.2729 52 1 1.8752 -2.6709 0.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997609492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:50 Heat of formation + Delta-G solvation = 6.800755 kcal Electronic energy + Delta-G solvation = -30777.113838 eV Core-core repulsion = 26776.280623 eV Total energy + Delta-G solvation = -4000.833215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.41890 -40.89073 -39.37851 -37.39472 -36.75384 -34.60684 -34.28758 -32.68530 -31.58935 -31.03181 -30.05532 -29.58269 -27.15729 -25.95703 -24.89726 -24.07038 -23.65337 -23.13484 -21.99205 -21.00933 -20.18017 -19.95819 -18.76827 -18.49016 -17.35246 -17.12734 -16.97743 -16.78272 -15.94583 -15.67284 -15.60132 -15.42026 -15.25943 -15.08542 -15.03931 -14.76107 -14.63786 -14.55846 -14.15718 -14.07573 -14.03763 -13.58197 -13.14678 -12.94962 -12.87914 -12.78305 -12.55107 -12.44126 -12.16718 -12.09213 -11.98785 -11.92141 -11.91347 -11.72237 -11.53571 -11.33509 -11.20195 -11.02199 -10.92954 -10.70478 -10.50488 -10.09641 -9.46338 -8.66456 -7.84991 -5.29114 0.55033 1.35561 1.47336 1.49294 1.57251 1.64954 2.30655 2.51158 2.53086 3.15971 3.28445 3.56385 3.63807 3.70835 3.79496 3.82172 3.89966 4.01130 4.06162 4.10254 4.34129 4.39874 4.40395 4.44072 4.44803 4.50104 4.58808 4.63648 4.71778 4.79989 4.85684 4.91784 4.94917 4.97134 4.97408 5.02686 5.09178 5.14940 5.18220 5.25783 5.28018 5.30724 5.32195 5.43613 5.44625 5.53579 5.60173 5.68940 5.80621 6.06201 6.41349 6.51385 6.87064 7.17115 7.24222 7.89347 8.41348 9.21315 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002303 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.169460 B =12156.509481 C =13519.458031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.081 0.919 4 N -0.706 5.706 5 C 0.601 3.399 6 O -0.581 6.581 7 C -0.103 4.103 8 C 0.046 3.954 9 N -0.447 5.447 10 C 0.208 3.792 11 N -0.494 5.494 12 C -0.038 4.038 13 C -0.121 4.121 14 C -0.132 4.132 15 C 0.090 3.910 16 C -0.075 4.075 17 C -0.114 4.114 18 C 0.140 3.860 19 N -0.610 5.610 20 C -0.260 4.260 21 H 0.067 0.933 22 C -0.054 4.054 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.269 1.269 28 C 0.179 3.821 29 C -0.119 4.119 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.408 0.592 34 H 0.206 0.794 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.010 0.990 48 H 0.249 0.751 49 H -0.008 1.008 50 H 0.053 0.947 51 H 0.059 0.941 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 6.384 -29.882 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.099 0.901 4 N -0.356 5.356 5 C 0.389 3.611 6 O -0.462 6.462 7 C -0.231 4.231 8 C -0.096 4.096 9 N -0.128 5.128 10 C -0.057 4.057 11 N -0.214 5.214 12 C -0.076 4.076 13 C -0.158 4.158 14 C -0.169 4.169 15 C -0.029 4.029 16 C -0.094 4.094 17 C -0.153 4.153 18 C 0.015 3.985 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.085 0.915 22 C -0.249 4.249 23 N -0.582 5.582 24 Si 0.794 3.206 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.194 1.194 28 C 0.053 3.947 29 C -0.158 4.158 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.245 0.755 34 H 0.223 0.777 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.010 0.990 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.794 6.532 -29.339 30.296 hybrid contribution -0.274 -0.570 0.516 0.816 sum 3.520 5.962 -28.823 29.643 Atomic orbital electron populations 1.22162 0.94736 1.02207 1.02198 1.20949 0.94586 0.96289 0.83066 0.90098 1.46018 1.65772 1.14700 1.09118 1.17189 0.76337 0.85227 0.82384 1.90725 1.53605 1.16267 1.85611 1.20593 1.15196 0.92245 0.95070 1.22678 1.00792 0.96227 0.89854 1.45634 1.46949 1.08206 1.12031 1.24207 1.03293 0.91876 0.86356 1.70337 1.17188 1.14179 1.19710 1.20475 1.02688 0.87935 0.96548 1.21695 1.02375 0.99425 0.92354 1.21949 0.98442 0.92121 1.04391 1.22557 1.02226 1.02702 0.75456 1.21169 0.99534 0.95036 0.93633 1.21938 1.01099 0.98662 0.93630 1.21055 0.96050 0.84552 0.96830 1.44347 1.66768 1.06210 1.15998 1.19528 1.19145 0.92357 1.07964 0.91502 1.25782 0.98806 0.99089 1.01191 1.70200 1.29194 1.08742 1.50074 0.85300 0.78727 0.77884 0.78643 1.21162 1.22230 1.19402 1.20646 0.94609 0.94953 0.84497 1.22117 1.00525 0.95444 0.97748 0.92534 0.90271 0.93216 0.75505 0.77738 0.88654 0.88375 0.91031 0.87677 0.86179 0.90869 0.87688 0.87034 0.92135 0.91423 0.90083 0.92556 0.97196 0.94186 0.98972 0.92863 0.92249 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 8.78 71.98 0.63 -3.96 16 2 C 0.16 4.85 2.40 44.99 0.11 4.96 16 3 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 4 N -0.71 -22.54 4.99 -445.89 -2.23 -24.77 16 5 C 0.60 19.85 7.78 86.63 0.67 20.53 16 6 O -0.58 -21.35 16.54 -4.11 -0.07 -21.42 16 7 C -0.10 -2.99 6.98 40.52 0.28 -2.71 16 8 C 0.05 0.99 11.32 83.84 0.95 1.94 16 9 N -0.45 -7.23 3.11 -512.76 -1.60 -8.82 16 10 C 0.21 4.25 7.64 138.05 1.06 5.30 16 11 N -0.49 -14.03 11.00 -176.08 -1.94 -15.96 16 12 C -0.04 -0.46 6.33 30.10 0.19 -0.27 16 13 C -0.12 -0.59 5.95 30.77 0.18 -0.41 16 14 C -0.13 -0.35 5.93 30.72 0.18 -0.17 16 15 C 0.09 0.51 6.96 86.44 0.60 1.12 16 16 C -0.07 -2.55 2.14 -10.77 -0.02 -2.58 16 17 C -0.11 -3.89 4.96 30.67 0.15 -3.73 16 18 C 0.14 5.99 6.51 86.36 0.56 6.55 16 19 N -0.61 -31.52 2.99 -698.25 -2.09 -33.61 16 20 C -0.26 -14.63 9.59 84.03 0.81 -13.83 16 21 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 22 C -0.05 -3.07 4.89 84.86 0.42 -2.65 16 23 N -0.94 -56.83 11.21 21.65 0.24 -56.59 16 24 Si 0.97 45.93 29.59 68.60 2.03 47.96 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 C 0.18 8.95 5.35 86.51 0.46 9.41 16 29 C -0.12 -4.65 4.83 30.82 0.15 -4.50 16 30 H 0.06 1.73 6.46 -2.39 -0.02 1.72 16 31 H 0.08 2.17 6.46 -2.39 -0.02 2.16 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.41 13.13 6.55 -92.71 -0.61 12.52 16 34 H 0.21 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 0.38 8.12 -2.39 -0.02 0.36 16 38 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.07 0.31 8.11 -2.39 -0.02 0.29 16 41 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.30 6.51 -2.39 -0.02 2.28 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 49 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 50 H 0.05 3.01 6.03 -2.38 -0.01 3.00 16 51 H 0.06 2.35 6.51 -2.39 -0.02 2.33 16 52 H 0.06 2.09 6.46 -2.39 -0.02 2.08 16 Total: -1.00 -76.69 399.65 2.05 -74.63 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.31 Total: 23.57 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.38 Total: 15.00 kcal Atomic # 7 Polarization: -132.14 SS G_CDS: -7.61 Total: -139.75 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.69 2.05 -74.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997609492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.433 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds