Wall clock time and date at job start Wed Apr 1 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47043 * 2 1 4 4 N 1.46501 * 109.46708 * 239.99957 * 2 1 3 5 5 C 1.34777 * 119.99628 * 85.00447 * 4 2 1 6 6 O 1.21273 * 120.00464 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99443 * 180.26931 * 5 4 2 8 8 H 1.09005 * 109.58023 * 59.72598 * 7 5 4 9 9 C 1.53261 * 109.57842 * 179.97438 * 7 5 4 10 10 C 1.53193 * 109.47821 * 169.99952 * 9 7 5 11 11 C 1.53405 * 109.36389 * 290.72268 * 10 9 7 12 12 C 1.51037 * 108.20130 * 48.80435 * 11 10 9 13 13 N 1.30096 * 127.38768 * 163.93545 * 12 11 10 14 14 C 1.34290 * 109.21195 * 180.11980 * 13 12 11 15 15 C 1.34855 * 108.07163 * 359.97242 * 14 13 12 16 16 N 1.35421 * 123.98614 * 344.01254 * 12 11 10 17 17 C 1.52998 * 109.47002 * 119.99892 * 2 1 3 18 18 C 1.53048 * 109.45914 * 60.02951 * 17 2 1 19 19 C 1.53193 * 109.30786 * 178.59891 * 18 17 2 20 20 N 1.46924 * 108.76859 * 54.65892 * 19 18 17 21 21 C 1.36927 * 120.63407 * 126.40225 * 20 19 18 22 22 H 1.08002 * 120.00299 * 331.82053 * 21 20 19 23 23 C 1.38813 * 119.99926 * 151.82093 * 21 20 19 24 24 N 1.31619 * 120.00279 * 343.07964 * 23 21 20 25 25 Si 1.86807 * 119.99810 * 163.07914 * 23 21 20 26 26 H 1.48502 * 109.46929 * 60.00097 * 25 23 21 27 27 H 1.48504 * 109.46833 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47142 * 300.00061 * 25 23 21 29 29 C 1.46927 * 118.73503 * 306.37799 * 20 19 18 30 30 C 1.53033 * 109.46345 * 299.97361 * 17 2 1 31 31 H 1.09000 * 109.47089 * 300.00125 * 1 2 3 32 32 H 1.09000 * 109.47391 * 60.00231 * 1 2 3 33 33 H 1.09008 * 109.47354 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99911 * 264.99126 * 4 2 1 35 35 H 1.08992 * 109.47106 * 290.15157 * 9 7 5 36 36 H 1.09001 * 109.46351 * 50.13803 * 9 7 5 37 37 H 1.09000 * 109.48740 * 170.73454 * 10 9 7 38 38 H 1.09002 * 109.44549 * 50.69219 * 10 9 7 39 39 H 1.08997 * 109.72002 * 289.12352 * 11 10 9 40 40 H 1.09001 * 109.71256 * 168.47704 * 11 10 9 41 41 H 1.07995 * 125.96603 * 180.02562 * 14 13 12 42 42 H 1.08004 * 126.65464 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.45907 * 179.97438 * 17 2 1 44 44 H 1.08993 * 109.49412 * 298.56427 * 18 17 2 45 45 H 1.09003 * 109.49864 * 58.65925 * 18 17 2 46 46 H 1.08996 * 109.59869 * 294.86336 * 19 18 17 47 47 H 1.09003 * 109.70023 * 174.50471 * 19 18 17 48 48 H 0.97002 * 120.00055 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.58941 * 293.82300 * 29 20 19 50 50 H 1.09001 * 109.70658 * 173.46739 * 29 20 19 51 51 H 1.09005 * 109.49474 * 301.33774 * 30 17 2 52 52 H 1.09001 * 109.49722 * 61.40094 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6435 -0.7302 -3.5892 8 1 1.9707 -1.5529 -3.8317 9 6 2.6967 0.2527 -4.7639 10 6 3.4301 -0.3977 -5.9412 11 6 4.9163 -0.5502 -5.5929 12 6 5.0178 -1.1814 -4.2244 13 7 6.0633 -1.7387 -3.6871 14 6 5.7461 -2.1821 -2.4599 15 6 4.4509 -1.8856 -2.2298 16 7 3.9901 -1.2522 -3.3454 17 6 2.0400 -0.7212 1.2492 18 6 1.5303 -2.1643 1.2486 19 6 2.0714 -2.8932 2.4826 20 7 1.7085 -2.1259 3.6818 21 6 1.0455 -2.7250 4.7193 22 1 0.3978 -3.5685 4.5310 23 6 1.2058 -2.2483 6.0131 24 7 2.2201 -1.4615 6.3036 25 14 -0.0182 -2.7234 7.3419 26 1 -0.0266 -4.1998 7.5021 27 1 0.3742 -2.0890 8.6260 28 1 -1.3746 -2.2598 6.9542 29 6 2.0711 -0.7036 3.7469 30 6 1.5303 0.0007 2.4986 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 1.6824 0.5144 -5.0649 36 1 3.2293 1.1537 -4.4597 37 1 3.3263 0.2304 -6.8260 38 1 2.9999 -1.3795 -6.1391 39 1 5.3941 0.4294 -5.5824 40 1 5.4029 -1.1895 -6.3296 41 1 6.4123 -2.6871 -1.7761 42 1 3.8880 -2.1065 -1.3349 43 1 3.1300 -0.7215 1.2488 44 1 0.4406 -2.1652 1.2740 45 1 1.8740 -2.6712 0.3469 46 1 3.1563 -2.9725 2.4138 47 1 1.6352 -3.8904 2.5410 48 1 2.3319 -1.1280 7.2076 49 1 3.1561 -0.6042 3.7813 50 1 1.6346 -0.2534 4.6385 51 1 1.8741 1.0351 2.4868 52 1 0.4406 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997617087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:14 Heat of formation + Delta-G solvation = 39.726314 kcal Electronic energy + Delta-G solvation = -31786.098791 eV Core-core repulsion = 27786.693335 eV Total energy + Delta-G solvation = -3999.405456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.71114 -40.22897 -38.35622 -36.66514 -35.45514 -33.92739 -32.79732 -31.23986 -30.18281 -29.87311 -29.02715 -28.83093 -25.77799 -25.19821 -23.42110 -22.67416 -22.39404 -21.77993 -20.96483 -20.52119 -19.34790 -18.76397 -17.96315 -17.43213 -16.68878 -16.16027 -15.59807 -15.18531 -14.95835 -14.81500 -14.68915 -14.45522 -14.35891 -14.07301 -13.87380 -13.70707 -13.55755 -13.18578 -13.05409 -12.77308 -12.57652 -12.39960 -12.26774 -11.79330 -11.77426 -11.56548 -11.51378 -11.47905 -11.32454 -10.96646 -10.75008 -10.59678 -10.53211 -10.26135 -10.18079 -10.12838 -9.97764 -9.71447 -9.58274 -9.49522 -9.20277 -8.54338 -8.49953 -6.70956 -5.82303 -3.25148 1.71542 1.91952 2.76508 2.79631 2.97405 3.35555 3.41861 3.42563 3.80815 4.06493 4.15675 4.24013 4.40585 4.46386 4.64812 4.82873 4.88935 4.92159 5.02639 5.19549 5.27489 5.28111 5.33105 5.34185 5.39652 5.43423 5.44144 5.54831 5.60703 5.64109 5.71804 5.73917 5.89784 5.98216 6.02154 6.04462 6.16509 6.26760 6.28455 6.39322 6.55294 6.56040 6.64698 6.68761 6.73787 6.87474 6.91279 7.17698 7.33132 7.62130 7.75698 7.82677 7.89882 8.41622 9.17891 9.81246 10.37893 11.26141 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002499 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.394452 B =11203.651984 C =11983.985737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.085 0.915 4 N -0.714 5.714 5 C 0.509 3.491 6 O -0.523 6.523 7 C 0.117 3.883 8 H 0.114 0.886 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.035 4.035 12 C 0.212 3.788 13 N -0.487 5.487 14 C -0.021 4.021 15 C -0.057 4.057 16 N -0.450 5.450 17 C -0.085 4.085 18 C -0.129 4.129 19 C 0.146 3.854 20 N -0.590 5.590 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.172 3.828 30 C -0.133 4.133 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.016 0.984 47 H 0.053 0.947 48 H 0.255 0.745 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.050 0.950 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 1.772 -23.924 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.292 3.708 6 O -0.398 6.398 7 C 0.010 3.990 8 H 0.131 0.869 9 C -0.154 4.154 10 C -0.163 4.163 11 C -0.074 4.074 12 C -0.050 4.050 13 N -0.205 5.205 14 C -0.169 4.169 15 C -0.189 4.189 16 N -0.136 5.136 17 C -0.105 4.105 18 C -0.168 4.168 19 C 0.019 3.981 20 N -0.313 5.313 21 C -0.384 4.384 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.046 3.954 30 C -0.173 4.173 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.035 0.965 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.924 2.660 -24.113 24.277 hybrid contribution -1.299 -0.744 1.439 2.076 sum -0.375 1.916 -22.673 22.757 Atomic orbital electron populations 1.22226 0.95020 1.02473 1.02295 1.21235 0.94446 0.97053 0.83289 0.89679 1.46525 1.66046 1.14259 1.09900 1.20323 0.78616 0.87447 0.84415 1.90739 1.49632 1.15074 1.84323 1.21804 0.82854 0.98515 0.95814 0.86879 1.21771 1.03602 0.97827 0.92219 1.21723 0.94271 1.02006 0.98276 1.20230 0.97280 1.01040 0.88816 1.23365 0.83136 1.03283 0.95226 1.70097 1.26362 1.15174 1.08897 1.22398 0.94039 1.05584 0.94832 1.22659 0.97907 1.05503 0.92821 1.45241 1.10000 1.44046 1.14318 1.21339 1.00133 0.95755 0.93226 1.22135 1.01329 0.94937 0.98407 1.20868 0.96219 0.94290 0.86707 1.44013 1.66779 1.05038 1.15494 1.19121 1.19186 1.14501 0.85589 0.91809 1.25046 0.97038 1.00397 0.97073 1.70017 1.27791 1.37418 1.19424 0.86383 0.81185 0.78129 0.81146 1.20887 1.21618 1.21042 1.20760 0.96427 0.83712 0.94504 1.22260 1.01007 0.98002 0.96035 0.90758 0.92987 0.92017 0.76365 0.88615 0.89417 0.89386 0.90994 0.89107 0.88528 0.80921 0.80836 0.91305 0.91585 0.94158 0.96572 0.92849 0.93538 0.96486 0.89402 0.93155 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.78 37.16 0.33 -1.72 16 2 C 0.14 1.86 2.40 -67.93 -0.16 1.70 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.71 -7.90 4.33 -53.81 -0.23 -8.14 16 5 C 0.51 5.90 7.15 -10.98 -0.08 5.82 16 6 O -0.52 -7.72 15.49 5.56 0.09 -7.63 16 7 C 0.12 1.02 3.44 -68.96 -0.24 0.79 16 8 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 9 C -0.12 -0.85 4.70 -26.50 -0.12 -0.97 16 10 C -0.12 -0.66 5.95 -26.42 -0.16 -0.82 16 11 C -0.03 -0.25 6.34 -27.51 -0.17 -0.42 16 12 C 0.21 2.34 7.65 -155.24 -1.19 1.15 16 13 N -0.49 -6.45 11.24 -10.62 -0.12 -6.57 16 14 C -0.02 -0.26 11.87 -17.68 -0.21 -0.47 16 15 C -0.06 -0.62 10.45 -16.76 -0.18 -0.80 16 16 N -0.45 -4.66 2.98 -107.91 -0.32 -4.98 16 17 C -0.09 -1.27 2.14 -90.58 -0.19 -1.46 16 18 C -0.13 -1.92 4.81 -26.61 -0.13 -2.05 16 19 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 20 N -0.59 -14.09 2.99 -172.32 -0.52 -14.61 16 21 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 22 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 24 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 25 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 30 C -0.13 -2.35 4.97 -26.61 -0.13 -2.49 16 31 H 0.07 0.97 6.46 -51.93 -0.34 0.64 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.76 6.46 -51.92 -0.34 0.42 16 34 H 0.40 3.82 4.43 -40.82 -0.18 3.64 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.17 1.65 5.80 -52.48 -0.30 1.34 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.03 6.51 -51.93 -0.34 0.70 16 45 H 0.04 0.48 6.46 -51.93 -0.34 0.14 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.27 6.07 -51.93 -0.31 1.96 16 51 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.06 1.10 6.51 -51.93 -0.34 0.77 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -32.36 391.86 -10.83 -43.18 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.31 Total: 3.64 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.91 Total: -1.96 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.57 Total: -59.42 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.36 -10.83 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997617087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.910 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds