Wall clock time and date at job start Wed Apr 1 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47043 * 2 1 4 4 N 1.46501 * 109.46708 * 239.99957 * 2 1 3 5 5 C 1.34777 * 119.99628 * 85.00447 * 4 2 1 6 6 O 1.21273 * 120.00464 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99443 * 180.26931 * 5 4 2 8 8 H 1.09005 * 109.58023 * 59.72598 * 7 5 4 9 9 C 1.53261 * 109.57842 * 179.97438 * 7 5 4 10 10 C 1.53193 * 109.47821 * 169.99952 * 9 7 5 11 11 C 1.53405 * 109.36389 * 290.72268 * 10 9 7 12 12 C 1.51037 * 108.20130 * 48.80435 * 11 10 9 13 13 N 1.30096 * 127.38768 * 163.93545 * 12 11 10 14 14 C 1.34290 * 109.21195 * 180.11980 * 13 12 11 15 15 C 1.34855 * 108.07163 * 359.97242 * 14 13 12 16 16 N 1.35421 * 123.98614 * 344.01254 * 12 11 10 17 17 C 1.52998 * 109.47002 * 119.99892 * 2 1 3 18 18 C 1.53048 * 109.45914 * 60.02951 * 17 2 1 19 19 C 1.53193 * 109.30786 * 178.59891 * 18 17 2 20 20 N 1.46924 * 108.76859 * 54.65892 * 19 18 17 21 21 C 1.36927 * 120.63407 * 126.40225 * 20 19 18 22 22 H 1.08002 * 120.00299 * 331.82053 * 21 20 19 23 23 C 1.38813 * 119.99926 * 151.82093 * 21 20 19 24 24 N 1.31619 * 120.00279 * 343.07964 * 23 21 20 25 25 Si 1.86807 * 119.99810 * 163.07914 * 23 21 20 26 26 H 1.48502 * 109.46929 * 60.00097 * 25 23 21 27 27 H 1.48504 * 109.46833 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47142 * 300.00061 * 25 23 21 29 29 C 1.46927 * 118.73503 * 306.37799 * 20 19 18 30 30 C 1.53033 * 109.46345 * 299.97361 * 17 2 1 31 31 H 1.09000 * 109.47089 * 300.00125 * 1 2 3 32 32 H 1.09000 * 109.47391 * 60.00231 * 1 2 3 33 33 H 1.09008 * 109.47354 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99911 * 264.99126 * 4 2 1 35 35 H 1.08992 * 109.47106 * 290.15157 * 9 7 5 36 36 H 1.09001 * 109.46351 * 50.13803 * 9 7 5 37 37 H 1.09000 * 109.48740 * 170.73454 * 10 9 7 38 38 H 1.09002 * 109.44549 * 50.69219 * 10 9 7 39 39 H 1.08997 * 109.72002 * 289.12352 * 11 10 9 40 40 H 1.09001 * 109.71256 * 168.47704 * 11 10 9 41 41 H 1.07995 * 125.96603 * 180.02562 * 14 13 12 42 42 H 1.08004 * 126.65464 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.45907 * 179.97438 * 17 2 1 44 44 H 1.08993 * 109.49412 * 298.56427 * 18 17 2 45 45 H 1.09003 * 109.49864 * 58.65925 * 18 17 2 46 46 H 1.08996 * 109.59869 * 294.86336 * 19 18 17 47 47 H 1.09003 * 109.70023 * 174.50471 * 19 18 17 48 48 H 0.97002 * 120.00055 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.58941 * 293.82300 * 29 20 19 50 50 H 1.09001 * 109.70658 * 173.46739 * 29 20 19 51 51 H 1.09005 * 109.49474 * 301.33774 * 30 17 2 52 52 H 1.09001 * 109.49722 * 61.40094 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6435 -0.7302 -3.5892 8 1 1.9707 -1.5529 -3.8317 9 6 2.6967 0.2527 -4.7639 10 6 3.4301 -0.3977 -5.9412 11 6 4.9163 -0.5502 -5.5929 12 6 5.0178 -1.1814 -4.2244 13 7 6.0633 -1.7387 -3.6871 14 6 5.7461 -2.1821 -2.4599 15 6 4.4509 -1.8856 -2.2298 16 7 3.9901 -1.2522 -3.3454 17 6 2.0400 -0.7212 1.2492 18 6 1.5303 -2.1643 1.2486 19 6 2.0714 -2.8932 2.4826 20 7 1.7085 -2.1259 3.6818 21 6 1.0455 -2.7250 4.7193 22 1 0.3978 -3.5685 4.5310 23 6 1.2058 -2.2483 6.0131 24 7 2.2201 -1.4615 6.3036 25 14 -0.0182 -2.7234 7.3419 26 1 -0.0266 -4.1998 7.5021 27 1 0.3742 -2.0890 8.6260 28 1 -1.3746 -2.2598 6.9542 29 6 2.0711 -0.7036 3.7469 30 6 1.5303 0.0007 2.4986 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 1.6824 0.5144 -5.0649 36 1 3.2293 1.1537 -4.4597 37 1 3.3263 0.2304 -6.8260 38 1 2.9999 -1.3795 -6.1391 39 1 5.3941 0.4294 -5.5824 40 1 5.4029 -1.1895 -6.3296 41 1 6.4123 -2.6871 -1.7761 42 1 3.8880 -2.1065 -1.3349 43 1 3.1300 -0.7215 1.2488 44 1 0.4406 -2.1652 1.2740 45 1 1.8740 -2.6712 0.3469 46 1 3.1563 -2.9725 2.4138 47 1 1.6352 -3.8904 2.5410 48 1 2.3319 -1.1280 7.2076 49 1 3.1561 -0.6042 3.7813 50 1 1.6346 -0.2534 4.6385 51 1 1.8741 1.0351 2.4868 52 1 0.4406 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997617087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:13 Heat of formation + Delta-G solvation = 21.167259 kcal Electronic energy + Delta-G solvation = -31786.903572 eV Core-core repulsion = 27786.693335 eV Total energy + Delta-G solvation = -4000.210237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.50160 -41.22806 -39.65982 -37.46105 -36.76972 -34.89872 -34.15606 -32.74568 -31.46356 -30.92286 -30.31511 -29.63138 -27.19210 -26.23573 -24.78706 -23.97522 -23.20340 -22.80510 -22.06307 -21.76516 -20.22599 -19.96322 -18.90016 -18.55021 -18.14844 -17.23361 -16.77447 -16.37530 -16.02762 -15.72748 -15.66689 -15.57263 -15.35829 -15.31821 -15.06327 -14.77595 -14.70539 -14.41564 -14.11453 -14.08717 -13.83552 -13.62607 -13.07875 -13.03943 -12.96508 -12.93214 -12.59678 -12.50425 -12.34471 -12.18073 -12.04721 -12.02621 -11.97388 -11.69229 -11.68161 -11.42925 -11.17197 -11.01307 -10.96270 -10.56159 -10.50055 -10.24108 -9.35903 -8.66458 -7.86734 -5.31809 0.88958 1.09599 1.46686 1.48732 1.55334 1.90615 1.96785 2.11912 2.51569 3.12478 3.27823 3.41041 3.47616 3.65059 3.67141 3.75556 3.82044 3.83830 3.99614 4.12214 4.19728 4.33326 4.38416 4.41670 4.52232 4.55911 4.58640 4.62709 4.70238 4.75790 4.80511 4.89321 4.90339 4.92641 4.97721 5.01335 5.07392 5.10063 5.20649 5.22794 5.25232 5.27227 5.29749 5.38784 5.42242 5.57128 5.66893 5.74068 5.79331 6.11071 6.28310 6.40137 6.93662 7.07560 7.16176 7.88640 8.39547 9.19282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002499 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.394452 B =11203.651984 C =11983.985737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.070 0.930 4 N -0.707 5.707 5 C 0.509 3.491 6 O -0.556 6.556 7 C 0.119 3.881 8 H 0.145 0.855 9 C -0.115 4.115 10 C -0.113 4.113 11 C -0.037 4.037 12 C 0.207 3.793 13 N -0.524 5.524 14 C -0.046 4.046 15 C -0.059 4.059 16 N -0.450 5.450 17 C -0.075 4.075 18 C -0.115 4.115 19 C 0.139 3.861 20 N -0.609 5.609 21 C -0.260 4.260 22 H 0.067 0.933 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.278 1.278 29 C 0.178 3.822 30 C -0.121 4.121 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.408 0.592 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.013 0.987 47 H 0.054 0.946 48 H 0.249 0.751 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.060 0.940 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 0.993 -26.733 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.088 0.912 4 N -0.360 5.360 5 C 0.293 3.707 6 O -0.433 6.433 7 C 0.014 3.986 8 H 0.162 0.838 9 C -0.153 4.153 10 C -0.151 4.151 11 C -0.076 4.076 12 C -0.056 4.056 13 N -0.243 5.243 14 C -0.192 4.192 15 C -0.192 4.192 16 N -0.136 5.136 17 C -0.094 4.094 18 C -0.153 4.153 19 C 0.014 3.986 20 N -0.332 5.332 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.247 4.247 24 N -0.583 5.583 25 Si 0.792 3.208 26 H -0.201 1.201 27 H -0.223 1.223 28 H -0.204 1.204 29 C 0.052 3.948 30 C -0.161 4.161 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.197 0.803 42 H 0.204 0.796 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.009 0.991 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.602 1.848 -26.959 27.029 hybrid contribution -0.759 -0.509 2.299 2.474 sum -1.361 1.339 -24.659 24.733 Atomic orbital electron populations 1.22165 0.94286 1.02927 1.02064 1.20891 0.94790 0.96050 0.83076 0.91196 1.46391 1.65770 1.14588 1.09282 1.20795 0.77794 0.87065 0.85020 1.90732 1.51046 1.16617 1.84890 1.21995 0.82400 0.99569 0.94660 0.83812 1.21816 1.04461 0.96700 0.92317 1.21709 0.92334 1.02967 0.98111 1.20446 0.99062 1.01012 0.87087 1.24074 0.82697 1.02400 0.96405 1.70076 1.27845 1.16697 1.09732 1.22689 0.95023 1.06433 0.95080 1.22846 0.97697 1.05238 0.93377 1.45350 1.10525 1.43683 1.14010 1.21168 0.99733 0.95704 0.92808 1.21975 1.01165 0.94457 0.97746 1.21069 0.96203 0.94575 0.86759 1.44286 1.66890 1.05761 1.16306 1.19478 1.18910 1.14191 0.86464 0.91488 1.25785 0.98657 1.01074 0.99203 1.70179 1.29617 1.39098 1.19358 0.85393 0.79164 0.77955 0.78260 1.20103 1.22325 1.20390 1.20537 0.94666 0.83986 0.95564 1.22044 1.00811 0.98276 0.94948 0.91455 0.92794 0.91152 0.75247 0.87181 0.91592 0.86916 0.89811 0.88867 0.87377 0.80262 0.79554 0.91811 0.91504 0.90091 0.96948 0.92708 0.94230 0.99095 0.93084 0.92123 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.78 71.98 0.63 -2.94 16 2 C 0.16 3.75 2.40 44.99 0.11 3.86 16 3 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 4 N -0.71 -13.71 4.33 -442.53 -1.92 -15.62 16 5 C 0.51 10.56 7.15 87.66 0.63 11.18 16 6 O -0.56 -15.51 15.49 -3.01 -0.05 -15.55 16 7 C 0.12 1.73 3.44 44.34 0.15 1.88 16 8 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 9 C -0.11 -1.35 4.70 30.75 0.14 -1.20 16 10 C -0.11 -0.80 5.95 30.79 0.18 -0.62 16 11 C -0.04 -0.45 6.34 30.09 0.19 -0.26 16 12 C 0.21 4.24 7.65 138.23 1.06 5.30 16 13 N -0.52 -13.58 11.24 -187.52 -2.11 -15.69 16 14 C -0.05 -1.08 11.87 83.54 0.99 -0.09 16 15 C -0.06 -1.20 10.45 83.22 0.87 -0.33 16 16 N -0.45 -8.34 2.98 -495.33 -1.47 -9.82 16 17 C -0.07 -2.11 2.14 -10.77 -0.02 -2.13 16 18 C -0.11 -3.13 4.81 30.67 0.15 -2.98 16 19 C 0.14 5.25 6.52 86.36 0.56 5.81 16 20 N -0.61 -29.31 2.99 -699.09 -2.09 -31.40 16 21 C -0.26 -13.96 9.58 84.04 0.81 -13.15 16 22 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 23 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 24 N -0.94 -55.29 11.19 21.65 0.24 -55.05 16 25 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 C 0.18 8.37 5.30 86.36 0.46 8.83 16 30 C -0.12 -4.25 4.97 30.67 0.15 -4.10 16 31 H 0.07 1.64 6.46 -2.39 -0.02 1.62 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.49 6.46 -2.38 -0.02 1.48 16 34 H 0.41 6.36 4.43 -92.71 -0.41 5.95 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.09 7.76 -2.39 -0.02 1.07 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.08 0.45 8.12 -2.39 -0.02 0.43 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.19 3.08 5.80 -2.91 -0.02 3.06 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.88 6.51 -2.39 -0.02 1.87 16 45 H 0.08 1.59 6.46 -2.39 -0.02 1.57 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 49 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 50 H 0.05 2.76 6.07 -2.39 -0.01 2.75 16 51 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 52 H 0.06 2.20 6.51 -2.39 -0.02 2.19 16 Total: -1.00 -72.85 391.86 2.62 -70.23 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.52 Total: 19.86 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.48 Total: 6.61 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -7.35 Total: -127.59 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.05 Total: -15.55 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.85 2.62 -70.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997617087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.394 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds