Wall clock time and date at job start Wed Apr 1 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46872 * 2 1 4 4 N 1.46498 * 109.46919 * 239.99353 * 2 1 3 5 5 C 1.34779 * 119.99668 * 85.00916 * 4 2 1 6 6 O 1.21594 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.47539 * 120.00224 * 179.97438 * 5 4 2 8 8 C 1.40341 * 120.47989 * 179.97438 * 7 5 4 9 9 C 1.36857 * 118.49609 * 179.97438 * 8 7 5 10 10 C 1.39395 * 119.37782 * 0.02562 * 9 8 7 11 11 N 1.38460 * 119.53806 * 179.97438 * 10 9 8 12 12 C 1.46501 * 120.00213 * 4.99849 * 11 10 9 13 13 C 1.46499 * 119.99772 * 184.99820 * 11 10 9 14 14 N 1.32605 * 120.92290 * 359.97438 * 10 9 8 15 15 C 1.31683 * 121.63524 * 359.70757 * 14 10 9 16 16 C 1.53004 * 109.46817 * 119.99727 * 2 1 3 17 17 C 1.53040 * 109.45984 * 299.99746 * 16 2 1 18 18 C 1.53195 * 109.31169 * 181.37308 * 17 16 2 19 19 N 1.46928 * 108.77547 * 305.37044 * 18 17 16 20 20 C 1.36946 * 120.62648 * 233.58541 * 19 18 17 21 21 H 1.08001 * 119.99879 * 27.80702 * 20 19 18 22 22 C 1.38814 * 119.99719 * 207.80443 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46924 * 118.74378 * 53.85512 * 19 18 17 29 29 C 1.53039 * 109.45048 * 60.06445 * 16 2 1 30 30 H 1.08998 * 109.47137 * 60.00420 * 1 2 3 31 31 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47163 * 300.00510 * 1 2 3 33 33 H 0.97000 * 120.00266 * 264.99662 * 4 2 1 34 34 H 1.08000 * 120.75264 * 359.97438 * 8 7 5 35 35 H 1.07996 * 120.31280 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47140 * 89.99730 * 12 11 10 37 37 H 1.08999 * 109.46971 * 210.00241 * 12 11 10 38 38 H 1.09007 * 109.46631 * 330.00340 * 12 11 10 39 39 H 1.08999 * 109.47223 * 359.97438 * 13 11 10 40 40 H 1.09006 * 109.46818 * 120.00068 * 13 11 10 41 41 H 1.09003 * 109.47157 * 239.99605 * 13 11 10 42 42 H 1.07995 * 119.73993 * 180.28769 * 15 14 10 43 43 H 1.09003 * 109.46008 * 180.02562 * 16 2 1 44 44 H 1.09006 * 109.49747 * 61.42547 * 17 16 2 45 45 H 1.08994 * 109.52481 * 301.34165 * 17 16 2 46 46 H 1.08992 * 109.58544 * 185.58164 * 18 17 16 47 47 H 1.09001 * 109.70369 * 65.22301 * 18 17 16 48 48 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 49 49 H 1.09007 * 109.58117 * 65.92823 * 28 19 18 50 50 H 1.08997 * 109.58707 * 186.35174 * 28 19 18 51 51 H 1.09004 * 109.49499 * 298.56924 * 29 16 2 52 52 H 1.08994 * 109.49949 * 58.63136 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8577 1.1613 -2.4118 7 6 2.6394 -0.7138 -3.5616 8 6 2.7769 -0.0236 -4.7758 9 6 3.2377 -0.7083 -5.8675 10 6 3.5540 -2.0602 -5.7434 11 7 4.0200 -2.7563 -6.8459 12 6 4.2817 -2.0489 -8.1018 13 6 4.2513 -4.2001 -6.7564 14 7 3.4149 -2.6889 -4.5842 15 6 2.9808 -2.0660 -3.5083 16 6 2.0400 -0.7212 1.2493 17 6 1.5297 0.0005 2.4987 18 6 2.0702 -0.7040 3.7470 19 7 1.7080 -2.1264 3.6815 20 6 1.0446 -2.7259 4.7188 21 1 0.4011 -2.1402 5.3586 22 6 1.1993 -4.0862 4.9478 23 7 2.2969 -4.6986 4.5572 24 14 -0.1470 -5.0459 5.8171 25 1 -1.4049 -4.9550 5.0332 26 1 0.2593 -6.4691 5.9385 27 1 -0.3652 -4.4768 7.1713 28 6 2.0763 -2.8948 2.4846 29 6 1.5309 -2.1644 1.2481 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2490 -1.6319 -1.1525 34 1 2.5248 1.0242 -4.8471 35 1 3.3544 -0.2062 -6.8165 36 1 5.3142 -1.6999 -8.1139 37 1 4.1167 -2.7251 -8.9407 38 1 3.6087 -1.1955 -8.1852 39 1 4.0035 -4.5463 -5.7530 40 1 3.6234 -4.7144 -7.4841 41 1 5.2995 -4.4138 -6.9655 42 1 2.8836 -2.6069 -2.5786 43 1 3.1300 -0.7207 1.2494 44 1 0.4399 -0.0212 2.5118 45 1 1.8728 1.0350 2.4874 46 1 1.6313 -0.2558 4.6383 47 1 3.1551 -0.6046 3.7844 48 1 3.0222 -4.1896 4.1627 49 1 3.1617 -2.9703 2.4186 50 1 1.6414 -3.8926 2.5429 51 1 0.4411 -2.1658 1.2730 52 1 1.8747 -2.6708 0.3462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997653242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:48 Heat of formation + Delta-G solvation = 30.160433 kcal Electronic energy + Delta-G solvation = -30564.574628 eV Core-core repulsion = 26564.754365 eV Total energy + Delta-G solvation = -3999.820263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.92482 -39.66328 -38.12085 -36.79721 -35.45252 -33.17523 -32.85157 -31.53603 -30.34103 -30.05764 -28.71255 -28.57516 -26.19353 -25.24677 -23.65471 -23.47982 -22.66828 -22.09835 -20.75493 -20.24034 -18.78460 -18.28852 -17.47596 -17.28444 -16.93129 -15.83832 -15.67357 -15.31336 -14.99487 -14.71801 -14.47122 -14.44609 -14.24524 -13.81000 -13.63594 -13.52209 -13.42220 -13.25796 -13.04811 -12.86459 -12.76575 -12.68838 -12.52485 -12.30324 -12.10367 -11.78297 -11.53834 -11.15133 -10.88875 -10.66674 -10.40821 -10.36129 -10.24254 -10.16552 -10.13520 -10.02944 -9.86806 -9.69112 -9.55362 -9.23865 -8.99657 -8.33834 -7.97795 -6.84992 -6.07294 -3.20028 0.64537 1.06522 2.45793 2.85984 3.19874 3.50490 3.53531 3.71589 3.74218 4.04963 4.48113 4.60414 4.60917 4.65214 4.76594 4.78105 4.89967 4.99921 5.03788 5.12026 5.14946 5.18201 5.23700 5.33764 5.36270 5.50533 5.52369 5.61324 5.62300 5.68467 5.82069 5.91058 5.98399 6.03395 6.13038 6.14518 6.20559 6.27753 6.37936 6.43052 6.44825 6.58958 6.62163 6.65521 6.75583 6.86407 6.87167 7.08858 7.21037 7.55371 7.71029 8.03136 8.24948 8.59623 9.14208 9.87271 10.32501 11.22956 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002272 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.745648 B =12319.903676 C =13762.646351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.084 0.916 4 N -0.719 5.719 5 C 0.569 3.431 6 O -0.548 6.548 7 C -0.251 4.251 8 C 0.026 3.974 9 C -0.249 4.249 10 C 0.420 3.580 11 N -0.610 5.610 12 C 0.091 3.909 13 C 0.088 3.912 14 N -0.545 5.545 15 C 0.192 3.808 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.147 3.853 19 N -0.598 5.598 20 C -0.349 4.349 21 H 0.055 0.945 22 C -0.025 4.025 23 N -0.916 5.916 24 Si 1.064 2.936 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.293 1.293 28 C 0.151 3.849 29 C -0.131 4.131 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.159 0.841 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.014 0.986 48 H 0.268 0.732 49 H 0.015 0.985 50 H 0.079 0.921 51 H 0.066 0.934 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 6.068 -25.000 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.102 0.898 4 N -0.371 5.371 5 C 0.357 3.643 6 O -0.427 6.427 7 C -0.260 4.260 8 C 0.000 4.000 9 C -0.274 4.274 10 C 0.185 3.815 11 N -0.322 5.322 12 C -0.053 4.053 13 C -0.054 4.054 14 N -0.263 5.263 15 C 0.032 3.968 16 C -0.105 4.105 17 C -0.165 4.165 18 C 0.021 3.979 19 N -0.322 5.322 20 C -0.478 4.478 21 H 0.073 0.927 22 C -0.227 4.227 23 N -0.556 5.556 24 Si 0.894 3.106 25 H -0.221 1.221 26 H -0.211 1.211 27 H -0.220 1.220 28 C 0.025 3.975 29 C -0.171 4.171 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.176 0.824 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.079 0.921 49 H 0.033 0.967 50 H 0.097 0.903 51 H 0.084 0.916 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.693 4.386 -24.624 25.156 hybrid contribution 0.445 1.937 -0.591 2.074 sum 3.138 6.324 -25.215 26.184 Atomic orbital electron populations 1.22233 0.95304 1.02524 1.02027 1.21082 0.94275 0.96823 0.83432 0.89812 1.46133 1.67037 1.14169 1.09719 1.17920 0.77292 0.86345 0.82760 1.90749 1.51246 1.15630 1.85097 1.20650 1.13208 0.96127 0.95977 1.21137 0.88748 1.00135 0.90000 1.21147 1.11101 0.94146 1.00990 1.18525 0.87940 0.88297 0.86757 1.46206 1.68624 1.08223 1.09132 1.21780 1.01241 0.97770 0.84466 1.21726 1.00440 0.78870 1.04400 1.67200 1.21583 1.39044 0.98435 1.22685 0.88323 0.90372 0.95464 1.21316 1.00024 0.96098 0.93065 1.22057 1.01253 0.97712 0.95486 1.20884 0.96007 0.86091 0.94907 1.44116 1.67440 1.05207 1.15484 1.19961 1.22899 0.94916 1.10010 0.92702 1.25829 1.00661 0.95621 1.00620 1.70793 1.03609 1.39952 1.41278 0.83531 0.75195 0.76284 0.75604 1.22086 1.21143 1.22026 1.21016 0.95973 0.96042 0.84478 1.22252 1.01382 0.94531 0.98888 0.92845 0.91964 0.91224 0.76544 0.83789 0.84435 0.92583 0.90745 0.90761 0.88687 0.92692 0.92694 0.82351 0.91408 0.91590 0.92897 0.92670 0.96791 0.92066 0.96691 0.90303 0.91573 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.78 37.16 0.33 -1.94 16 2 C 0.15 2.08 2.40 -67.93 -0.16 1.92 16 3 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 4 N -0.72 -9.28 4.95 -54.84 -0.27 -9.55 16 5 C 0.57 7.93 7.73 -12.47 -0.10 7.84 16 6 O -0.55 -9.28 16.07 5.28 0.08 -9.19 16 7 C -0.25 -2.99 5.89 -104.82 -0.62 -3.61 16 8 C 0.03 0.27 9.65 -39.29 -0.38 -0.10 16 9 C -0.25 -2.28 9.20 -39.65 -0.36 -2.64 16 10 C 0.42 4.29 7.36 -155.27 -1.14 3.14 16 11 N -0.61 -4.82 3.37 -189.70 -0.64 -5.46 16 12 C 0.09 0.41 10.31 59.85 0.62 1.02 16 13 C 0.09 0.60 10.71 59.85 0.64 1.24 16 14 N -0.55 -6.26 8.82 -12.14 -0.11 -6.37 16 15 C 0.19 2.12 10.71 -17.12 -0.18 1.94 16 16 C -0.09 -1.34 2.14 -90.58 -0.19 -1.53 16 17 C -0.13 -2.10 4.97 -26.61 -0.13 -2.23 16 18 C 0.15 3.05 6.51 -3.71 -0.02 3.02 16 19 N -0.60 -14.64 2.85 -172.05 -0.49 -15.13 16 20 C -0.35 -9.63 9.49 -15.05 -0.14 -9.77 16 21 H 0.06 1.53 7.95 -52.49 -0.42 1.11 16 22 C -0.03 -0.71 4.66 -17.43 -0.08 -0.79 16 23 N -0.92 -27.17 12.46 55.49 0.69 -26.48 16 24 Si 1.06 25.11 29.99 -169.99 -5.10 20.01 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.15 3.39 4.72 -3.49 -0.02 3.37 16 29 C -0.13 -2.27 4.83 -26.39 -0.13 -2.39 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.87 6.46 -51.93 -0.34 0.54 16 32 H 0.07 0.95 6.46 -51.93 -0.34 0.61 16 33 H 0.40 4.52 4.89 -40.82 -0.20 4.32 16 34 H 0.14 1.44 7.73 -52.49 -0.41 1.04 16 35 H 0.14 0.88 5.99 -52.49 -0.31 0.56 16 36 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 38 H 0.07 0.28 5.95 -51.93 -0.31 -0.03 16 39 H 0.09 0.80 6.80 -51.93 -0.35 0.45 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.16 1.46 6.41 -52.49 -0.34 1.12 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.27 8.01 6.69 -40.82 -0.27 7.74 16 49 H 0.02 0.35 7.87 -51.93 -0.41 -0.06 16 50 H 0.08 2.00 6.31 -51.93 -0.33 1.68 16 51 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16 52 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -33.54 399.44 -9.90 -43.43 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.01 Total: 4.24 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.08 Total: -1.52 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.82 Total: -62.99 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.10 Total: 20.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.54 -9.90 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997653242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.594 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds