Wall clock time and date at job start Wed Apr 1 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46872 * 2 1 4 4 N 1.46498 * 109.46919 * 239.99353 * 2 1 3 5 5 C 1.34779 * 119.99668 * 85.00916 * 4 2 1 6 6 O 1.21594 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.47539 * 120.00224 * 179.97438 * 5 4 2 8 8 C 1.40341 * 120.47989 * 179.97438 * 7 5 4 9 9 C 1.36857 * 118.49609 * 179.97438 * 8 7 5 10 10 C 1.39395 * 119.37782 * 0.02562 * 9 8 7 11 11 N 1.38460 * 119.53806 * 179.97438 * 10 9 8 12 12 C 1.46501 * 120.00213 * 4.99849 * 11 10 9 13 13 C 1.46499 * 119.99772 * 184.99820 * 11 10 9 14 14 N 1.32605 * 120.92290 * 359.97438 * 10 9 8 15 15 C 1.31683 * 121.63524 * 359.70757 * 14 10 9 16 16 C 1.53004 * 109.46817 * 119.99727 * 2 1 3 17 17 C 1.53040 * 109.45984 * 299.99746 * 16 2 1 18 18 C 1.53195 * 109.31169 * 181.37308 * 17 16 2 19 19 N 1.46928 * 108.77547 * 305.37044 * 18 17 16 20 20 C 1.36946 * 120.62648 * 233.58541 * 19 18 17 21 21 H 1.08001 * 119.99879 * 27.80702 * 20 19 18 22 22 C 1.38814 * 119.99719 * 207.80443 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46924 * 118.74378 * 53.85512 * 19 18 17 29 29 C 1.53039 * 109.45048 * 60.06445 * 16 2 1 30 30 H 1.08998 * 109.47137 * 60.00420 * 1 2 3 31 31 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47163 * 300.00510 * 1 2 3 33 33 H 0.97000 * 120.00266 * 264.99662 * 4 2 1 34 34 H 1.08000 * 120.75264 * 359.97438 * 8 7 5 35 35 H 1.07996 * 120.31280 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47140 * 89.99730 * 12 11 10 37 37 H 1.08999 * 109.46971 * 210.00241 * 12 11 10 38 38 H 1.09007 * 109.46631 * 330.00340 * 12 11 10 39 39 H 1.08999 * 109.47223 * 359.97438 * 13 11 10 40 40 H 1.09006 * 109.46818 * 120.00068 * 13 11 10 41 41 H 1.09003 * 109.47157 * 239.99605 * 13 11 10 42 42 H 1.07995 * 119.73993 * 180.28769 * 15 14 10 43 43 H 1.09003 * 109.46008 * 180.02562 * 16 2 1 44 44 H 1.09006 * 109.49747 * 61.42547 * 17 16 2 45 45 H 1.08994 * 109.52481 * 301.34165 * 17 16 2 46 46 H 1.08992 * 109.58544 * 185.58164 * 18 17 16 47 47 H 1.09001 * 109.70369 * 65.22301 * 18 17 16 48 48 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 49 49 H 1.09007 * 109.58117 * 65.92823 * 28 19 18 50 50 H 1.08997 * 109.58707 * 186.35174 * 28 19 18 51 51 H 1.09004 * 109.49499 * 298.56924 * 29 16 2 52 52 H 1.08994 * 109.49949 * 58.63136 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8577 1.1613 -2.4118 7 6 2.6394 -0.7138 -3.5616 8 6 2.7769 -0.0236 -4.7758 9 6 3.2377 -0.7083 -5.8675 10 6 3.5540 -2.0602 -5.7434 11 7 4.0200 -2.7563 -6.8459 12 6 4.2817 -2.0489 -8.1018 13 6 4.2513 -4.2001 -6.7564 14 7 3.4149 -2.6889 -4.5842 15 6 2.9808 -2.0660 -3.5083 16 6 2.0400 -0.7212 1.2493 17 6 1.5297 0.0005 2.4987 18 6 2.0702 -0.7040 3.7470 19 7 1.7080 -2.1264 3.6815 20 6 1.0446 -2.7259 4.7188 21 1 0.4011 -2.1402 5.3586 22 6 1.1993 -4.0862 4.9478 23 7 2.2969 -4.6986 4.5572 24 14 -0.1470 -5.0459 5.8171 25 1 -1.4049 -4.9550 5.0332 26 1 0.2593 -6.4691 5.9385 27 1 -0.3652 -4.4768 7.1713 28 6 2.0763 -2.8948 2.4846 29 6 1.5309 -2.1644 1.2481 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2490 -1.6319 -1.1525 34 1 2.5248 1.0242 -4.8471 35 1 3.3544 -0.2062 -6.8165 36 1 5.3142 -1.6999 -8.1139 37 1 4.1167 -2.7251 -8.9407 38 1 3.6087 -1.1955 -8.1852 39 1 4.0035 -4.5463 -5.7530 40 1 3.6234 -4.7144 -7.4841 41 1 5.2995 -4.4138 -6.9655 42 1 2.8836 -2.6069 -2.5786 43 1 3.1300 -0.7207 1.2494 44 1 0.4399 -0.0212 2.5118 45 1 1.8728 1.0350 2.4874 46 1 1.6313 -0.2558 4.6383 47 1 3.1551 -0.6046 3.7844 48 1 3.0222 -4.1896 4.1627 49 1 3.1617 -2.9703 2.4186 50 1 1.6414 -3.8926 2.5429 51 1 0.4411 -2.1658 1.2730 52 1 1.8747 -2.6708 0.3462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997653242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:47 Heat of formation + Delta-G solvation = 10.374774 kcal Electronic energy + Delta-G solvation = -30565.432599 eV Core-core repulsion = 26564.754365 eV Total energy + Delta-G solvation = -4000.678234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.77690 -40.73418 -39.50227 -37.48693 -36.95914 -34.70545 -33.63735 -32.90896 -31.75082 -31.39576 -29.98292 -29.15341 -27.12946 -26.75727 -24.94387 -24.42555 -24.07911 -23.20987 -22.11351 -21.35177 -20.27100 -19.40602 -19.01715 -18.21754 -17.78843 -16.75588 -16.43693 -16.28599 -16.10349 -16.04211 -15.83116 -15.69068 -15.38604 -15.30760 -15.10120 -14.80617 -14.43358 -14.31204 -14.17574 -13.95907 -13.75176 -13.50053 -13.41011 -13.33716 -13.00333 -12.91788 -12.81744 -12.64395 -12.62639 -12.41615 -11.90073 -11.87910 -11.66218 -11.58824 -11.33108 -11.16857 -11.11619 -10.96492 -10.87213 -10.44288 -10.42406 -10.11827 -8.88192 -8.63691 -8.23878 -5.35492 -0.18267 0.30322 1.59538 1.66574 1.85458 1.88489 1.89659 2.15736 2.67550 2.90376 3.23781 3.34913 3.56887 3.72254 3.79335 3.83068 3.87404 3.91758 3.97876 4.09591 4.28847 4.32691 4.38466 4.47301 4.48942 4.51261 4.55811 4.58188 4.60650 4.71109 4.75777 4.82702 4.85918 4.91054 4.92146 4.97096 4.98632 5.08884 5.14293 5.16813 5.20205 5.26947 5.28359 5.31218 5.40884 5.52230 5.64605 5.87223 5.87706 6.20733 6.42497 6.52287 6.96274 7.10369 7.20529 7.82483 8.26915 9.02743 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002272 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.745648 B =12319.903676 C =13762.646351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.080 0.920 4 N -0.713 5.713 5 C 0.572 3.428 6 O -0.582 6.582 7 C -0.270 4.270 8 C 0.019 3.981 9 C -0.243 4.243 10 C 0.410 3.590 11 N -0.610 5.610 12 C 0.083 3.917 13 C 0.085 3.915 14 N -0.565 5.565 15 C 0.192 3.808 16 C -0.075 4.075 17 C -0.115 4.115 18 C 0.142 3.858 19 N -0.617 5.617 20 C -0.354 4.354 21 H 0.048 0.952 22 C -0.077 4.077 23 N -0.942 5.942 24 Si 1.113 2.887 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.155 3.845 29 C -0.117 4.117 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.171 0.829 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.012 0.988 48 H 0.254 0.746 49 H 0.003 0.997 50 H 0.044 0.956 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 6.582 -27.263 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.098 0.902 4 N -0.365 5.365 5 C 0.361 3.639 6 O -0.464 6.464 7 C -0.278 4.278 8 C -0.007 4.007 9 C -0.267 4.267 10 C 0.173 3.827 11 N -0.320 5.320 12 C -0.059 4.059 13 C -0.057 4.057 14 N -0.283 5.283 15 C 0.031 3.969 16 C -0.094 4.094 17 C -0.154 4.154 18 C 0.017 3.983 19 N -0.342 5.342 20 C -0.484 4.484 21 H 0.066 0.934 22 C -0.273 4.273 23 N -0.584 5.584 24 Si 0.938 3.062 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.030 3.970 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.188 0.812 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.067 0.933 47 H 0.030 0.970 48 H 0.064 0.936 49 H 0.021 0.979 50 H 0.062 0.938 51 H 0.079 0.921 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.379 4.912 -26.932 27.480 hybrid contribution 0.643 1.770 0.021 1.883 sum 3.021 6.682 -26.911 27.892 Atomic orbital electron populations 1.22181 0.94921 1.02405 1.02054 1.20859 0.94389 0.96346 0.82973 0.90211 1.46037 1.66761 1.14476 1.09243 1.18178 0.76542 0.85920 0.83259 1.90724 1.52950 1.17070 1.85642 1.20531 1.15060 0.96562 0.95672 1.21267 0.88941 1.00393 0.90115 1.21378 1.09918 0.93734 1.01666 1.18883 0.87759 0.89000 0.87059 1.46557 1.67296 1.08738 1.09427 1.22040 1.01979 0.98431 0.83461 1.21793 1.01581 0.78546 1.03806 1.67245 1.22491 1.39551 0.99062 1.22840 0.87891 0.90136 0.95995 1.21180 0.99912 0.94856 0.93471 1.21924 1.01013 0.98720 0.93766 1.21033 0.95957 0.84462 0.96848 1.44375 1.67607 1.06658 1.15567 1.20198 1.22441 0.95244 1.10475 0.93386 1.27129 1.01771 0.96998 1.01395 1.70910 1.04255 1.39849 1.43427 0.82874 0.73194 0.74606 0.75559 1.20570 1.21860 1.20386 1.20910 0.95098 0.94941 0.86096 1.22068 1.00829 0.95329 0.97381 0.93147 0.92109 0.90868 0.75612 0.83552 0.81611 0.91762 0.88824 0.89781 0.90596 0.91061 0.91439 0.81240 0.91403 0.91705 0.90189 0.93323 0.97030 0.93611 0.97895 0.93785 0.92052 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.78 71.98 0.63 -3.49 16 2 C 0.16 4.22 2.40 44.99 0.11 4.33 16 3 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 4 N -0.71 -17.48 4.95 -445.68 -2.21 -19.69 16 5 C 0.57 15.47 7.73 86.70 0.67 16.14 16 6 O -0.58 -19.38 16.07 -4.01 -0.06 -19.44 16 7 C -0.27 -6.21 5.89 -19.99 -0.12 -6.33 16 8 C 0.02 0.38 9.65 22.46 0.22 0.59 16 9 C -0.24 -3.96 9.20 22.22 0.20 -3.75 16 10 C 0.41 7.67 7.36 133.25 0.98 8.65 16 11 N -0.61 -8.26 3.37 -754.07 -2.54 -10.80 16 12 C 0.08 0.49 10.31 127.77 1.32 1.81 16 13 C 0.09 1.00 10.71 127.77 1.37 2.37 16 14 N -0.57 -12.43 8.82 -192.32 -1.70 -14.13 16 15 C 0.19 4.08 10.71 85.04 0.91 4.99 16 16 C -0.08 -2.23 2.14 -10.77 -0.02 -2.25 16 17 C -0.11 -3.67 4.97 30.67 0.15 -3.52 16 18 C 0.14 5.86 6.51 86.36 0.56 6.42 16 19 N -0.62 -30.60 2.85 -698.25 -1.99 -32.59 16 20 C -0.35 -19.80 9.49 84.03 0.80 -19.01 16 21 H 0.05 2.70 7.95 -2.91 -0.02 2.68 16 22 C -0.08 -4.36 4.66 84.86 0.40 -3.97 16 23 N -0.94 -57.37 12.46 21.65 0.27 -57.10 16 24 Si 1.11 51.05 29.99 68.60 2.06 53.11 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 C 0.16 7.08 4.72 86.51 0.41 7.49 16 29 C -0.12 -3.94 4.83 30.82 0.15 -3.79 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.60 6.46 -2.38 -0.02 1.59 16 32 H 0.07 1.86 6.46 -2.39 -0.02 1.84 16 33 H 0.41 8.59 4.89 -92.71 -0.45 8.13 16 34 H 0.15 2.81 7.73 -2.91 -0.02 2.79 16 35 H 0.17 1.62 5.99 -2.91 -0.02 1.60 16 36 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.09 0.23 8.07 -2.39 -0.02 0.21 16 38 H 0.08 0.35 5.95 -2.38 -0.01 0.33 16 39 H 0.08 1.21 6.80 -2.39 -0.02 1.20 16 40 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.17 2.97 6.41 -2.91 -0.02 2.95 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 2.12 6.51 -2.38 -0.02 2.10 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.01 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.25 15.74 6.69 -92.71 -0.62 15.12 16 49 H 0.00 0.15 7.87 -2.38 -0.02 0.13 16 50 H 0.04 2.30 6.31 -2.39 -0.02 2.29 16 51 H 0.06 2.16 6.51 -2.38 -0.02 2.14 16 52 H 0.07 2.01 6.46 -2.39 -0.02 2.00 16 Total: -1.00 -73.87 399.44 3.19 -70.68 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.63 Total: 23.29 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 8.73 Total: 6.68 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -8.16 Total: -134.31 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.44 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.11 kcal Total: -73.87 3.19 -70.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997653242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.053 kcal (2) G-P(sol) polarization free energy of solvation -73.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds