Wall clock time and date at job start Wed Apr 1 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 N 1.46494 * 109.46999 * 240.00155 * 2 1 3 5 5 C 1.34779 * 120.00241 * 85.00135 * 4 2 1 6 6 O 1.21566 * 120.00008 * 359.97438 * 5 4 2 7 7 C 1.47710 * 119.99940 * 179.97438 * 5 4 2 8 8 N 1.32210 * 126.68002 * 359.68332 * 7 5 4 9 9 N 1.28842 * 110.15094 * 179.84470 * 8 7 5 10 10 H 0.97002 * 124.97785 * 180.08321 * 9 8 7 11 11 C 1.34316 * 110.04083 * 0.36046 * 9 8 7 12 12 C 1.35581 * 107.21494 * 359.85269 * 11 9 8 13 13 C 1.50377 * 124.61606 * 179.77965 * 12 11 9 14 14 C 1.53469 * 108.28738 * 343.76144 * 13 12 11 15 15 C 1.53105 * 109.51678 * 49.47922 * 14 13 12 16 16 C 1.50707 * 128.90238 * 179.88658 * 11 9 8 17 17 C 1.52999 * 109.47222 * 119.99795 * 2 1 3 18 18 C 1.53036 * 109.46312 * 300.00273 * 17 2 1 19 19 C 1.53189 * 109.31608 * 181.38684 * 18 17 2 20 20 N 1.46924 * 108.77173 * 305.36115 * 19 18 17 21 21 C 1.36937 * 120.63200 * 233.58519 * 20 19 18 22 22 H 1.07998 * 120.00002 * 27.81172 * 21 20 19 23 23 C 1.38816 * 120.00353 * 207.80515 * 21 20 19 24 24 N 1.31623 * 119.99605 * 25.85418 * 23 21 20 25 25 Si 1.86798 * 120.00303 * 205.57558 * 23 21 20 26 26 H 1.48496 * 109.47254 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46775 * 120.00140 * 25 23 21 28 28 H 1.48502 * 109.47217 * 239.99955 * 25 23 21 29 29 C 1.46921 * 118.74129 * 53.86338 * 20 19 18 30 30 C 1.53045 * 109.45810 * 60.06905 * 17 2 1 31 31 H 1.08994 * 109.47010 * 59.99860 * 1 2 3 32 32 H 1.09000 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47117 * 300.00065 * 1 2 3 34 34 H 0.97006 * 120.00073 * 264.99907 * 4 2 1 35 35 H 1.09002 * 109.69548 * 103.46131 * 13 12 11 36 36 H 1.09000 * 109.70647 * 224.06037 * 13 12 11 37 37 H 1.09004 * 109.46444 * 289.46536 * 14 13 12 38 38 H 1.09003 * 109.46791 * 169.49951 * 14 13 12 39 39 H 1.08997 * 109.44840 * 169.89301 * 15 14 13 40 40 H 1.09003 * 109.43685 * 50.00253 * 15 14 13 41 41 H 1.08996 * 109.69501 * 283.03079 * 16 11 9 42 42 H 1.09000 * 109.69500 * 43.61166 * 16 11 9 43 43 H 1.08999 * 109.45200 * 180.02562 * 17 2 1 44 44 H 1.09001 * 109.49887 * 61.43314 * 18 17 2 45 45 H 1.09006 * 109.49636 * 301.33768 * 18 17 2 46 46 H 1.09005 * 109.58901 * 185.57907 * 19 18 17 47 47 H 1.08993 * 109.58830 * 65.15058 * 19 18 17 48 48 H 0.96999 * 119.99925 * 4.04910 * 24 23 21 49 49 H 1.08995 * 109.59060 * 65.92401 * 29 20 19 50 50 H 1.08997 * 109.59199 * 186.35374 * 29 20 19 51 51 H 1.08999 * 109.49721 * 298.56498 * 30 17 2 52 52 H 1.08996 * 109.49889 * 58.66112 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1612 -2.4119 7 6 2.6400 -0.7144 -3.5630 8 7 2.9963 -1.9845 -3.6515 9 7 3.3733 -2.2571 -4.8530 10 1 3.6777 -3.1267 -5.1565 11 6 3.2886 -1.1593 -5.6222 12 6 2.8271 -0.1543 -4.8378 13 6 2.5896 1.2547 -5.3062 14 6 3.3226 1.4486 -6.6406 15 6 2.9749 0.2965 -7.5872 16 6 3.6234 -0.9990 -7.0828 17 6 2.0401 -0.7212 1.2492 18 6 1.5298 0.0004 2.4986 19 6 2.0707 -0.7039 3.7469 20 7 1.7086 -2.1263 3.6815 21 6 1.0456 -2.7259 4.7188 22 1 0.4020 -2.1405 5.3587 23 6 1.2005 -4.0862 4.9479 24 7 2.2982 -4.6985 4.5573 25 14 -0.1456 -5.0463 5.8173 26 1 -1.2654 -4.1321 6.1566 27 1 -0.6405 -6.1243 4.9239 28 1 0.3991 -5.6460 7.0619 29 6 2.0770 -2.8947 2.4847 30 6 1.5312 -2.1646 1.2481 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 1.5214 1.4202 -5.4463 36 1 2.9772 1.9575 -4.5687 37 1 4.3984 1.4627 -6.4654 38 1 3.0156 2.3931 -7.0899 39 1 3.3465 0.5232 -8.5865 40 1 1.8928 0.1705 -7.6230 41 1 4.7047 -0.9411 -7.2077 42 1 3.2333 -1.8478 -7.6444 43 1 3.1301 -0.7206 1.2491 44 1 0.4401 -0.0216 2.5119 45 1 1.8732 1.0349 2.4870 46 1 1.6317 -0.2557 4.6384 47 1 3.1555 -0.6041 3.7816 48 1 3.0233 -4.1892 4.1627 49 1 3.1623 -2.9701 2.4185 50 1 1.6423 -3.8926 2.5429 51 1 0.4415 -2.1661 1.2732 52 1 1.8755 -2.6710 0.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997656865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:54 Heat of formation + Delta-G solvation = 31.648925 kcal Electronic energy + Delta-G solvation = -30997.416102 eV Core-core repulsion = 26997.660385 eV Total energy + Delta-G solvation = -3999.755718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.07978 -39.73464 -38.02713 -37.25942 -35.40115 -33.17625 -32.76846 -31.00088 -30.25782 -30.08264 -29.70373 -28.56329 -25.44201 -24.48183 -24.08952 -23.00603 -22.51916 -22.23723 -20.53141 -19.98409 -19.30479 -18.68126 -18.04512 -17.36292 -16.98643 -16.29477 -15.74102 -15.07160 -14.67227 -14.46552 -14.36814 -14.26952 -14.06709 -14.02916 -13.73841 -13.51250 -13.44799 -13.28761 -13.21864 -12.73387 -12.65543 -12.43985 -12.09339 -11.75571 -11.50409 -11.33036 -11.21327 -11.12175 -11.04572 -10.90924 -10.84299 -10.64180 -10.31310 -10.20398 -10.06066 -10.02742 -9.79515 -9.64747 -9.56488 -9.21861 -8.94185 -8.85113 -8.31702 -6.82924 -6.05690 -3.18201 1.41941 1.84897 2.54602 3.23905 3.39842 3.52392 3.55123 3.68813 4.14478 4.24005 4.44768 4.49310 4.62027 4.80976 4.92461 4.97630 5.06258 5.12826 5.15564 5.19485 5.26201 5.28361 5.38362 5.51030 5.53237 5.57484 5.64653 5.71471 5.72152 5.77727 5.85877 5.99877 6.00878 6.02158 6.06502 6.14190 6.23816 6.26871 6.31116 6.41010 6.50579 6.61384 6.64763 6.68602 6.73511 6.78455 6.89093 7.12197 7.24142 7.47389 7.74915 8.05664 8.27021 8.61403 9.16237 9.89180 10.34717 11.24554 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.002210 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.264859 B =12668.879195 C =13478.626121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.085 0.915 4 N -0.708 5.708 5 C 0.602 3.398 6 O -0.535 6.535 7 C -0.004 4.004 8 N -0.260 5.260 9 N -0.373 5.373 10 H 0.445 0.555 11 C 0.007 3.993 12 C -0.143 4.143 13 C -0.042 4.042 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.047 4.047 17 C -0.085 4.085 18 C -0.125 4.125 19 C 0.148 3.852 20 N -0.599 5.599 21 C -0.347 4.347 22 H 0.056 0.944 23 C -0.026 4.026 24 N -0.918 5.918 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.291 1.291 28 H -0.294 1.294 29 C 0.152 3.848 30 C -0.131 4.131 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.014 0.986 48 H 0.269 0.731 49 H 0.015 0.985 50 H 0.078 0.922 51 H 0.065 0.935 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 8.864 -25.841 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.360 5.360 5 C 0.386 3.614 6 O -0.410 6.410 7 C -0.164 4.164 8 N -0.096 5.096 9 N -0.086 5.086 10 H 0.289 0.711 11 C -0.120 4.120 12 C -0.153 4.153 13 C -0.080 4.080 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.104 4.104 18 C -0.165 4.165 19 C 0.021 3.979 20 N -0.323 5.323 21 C -0.477 4.477 22 H 0.074 0.926 23 C -0.228 4.228 24 N -0.558 5.558 25 Si 0.899 3.101 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.222 1.222 29 C 0.025 3.975 30 C -0.171 4.171 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.080 0.920 49 H 0.033 0.967 50 H 0.097 0.903 51 H 0.084 0.916 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.009 7.259 -24.640 25.766 hybrid contribution 0.772 1.079 -1.049 1.691 sum 2.781 8.338 -25.689 27.151 Atomic orbital electron populations 1.22232 0.95238 1.02560 1.02049 1.21117 0.94340 0.96821 0.83443 0.89742 1.46104 1.65987 1.14655 1.09222 1.16873 0.77384 0.85705 0.81426 1.90760 1.50827 1.14894 1.84539 1.21677 1.08071 0.90863 0.95792 1.73885 1.16474 1.17089 1.02123 1.42983 1.47947 1.11729 1.05940 0.71090 1.21170 1.07126 0.87549 0.96199 1.19880 1.06402 0.97388 0.91639 1.19982 1.00839 0.90998 0.96229 1.21674 1.00763 0.98223 0.95245 1.21564 1.01218 0.93564 0.98925 1.20228 1.01507 0.99496 0.87359 1.21304 1.00015 0.96127 0.92981 1.22062 1.01250 0.97706 0.95488 1.20885 0.95989 0.86095 0.94906 1.44130 1.67464 1.05206 1.15491 1.20010 1.22810 0.94890 1.09950 0.92643 1.25831 1.00700 0.95653 1.00639 1.70730 1.03686 1.40013 1.41400 0.83474 0.75126 0.75498 0.75993 1.21845 1.21739 1.22169 1.21009 0.95955 0.96023 0.84472 1.22249 1.01289 0.94551 0.98986 0.92800 0.91970 0.91155 0.75706 0.90622 0.89733 0.91701 0.91131 0.90883 0.91278 0.89889 0.90285 0.91449 0.91581 0.92883 0.92640 0.96810 0.92003 0.96728 0.90338 0.91639 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.78 37.16 0.33 -2.03 16 2 C 0.15 2.19 2.40 -67.93 -0.16 2.02 16 3 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -10.30 4.99 -54.79 -0.27 -10.58 16 5 C 0.60 9.21 7.79 -12.39 -0.10 9.12 16 6 O -0.53 -9.21 15.47 5.31 0.08 -9.12 16 7 C 0.00 -0.06 7.12 -82.99 -0.59 -0.65 16 8 N -0.26 -3.20 11.96 33.28 0.40 -2.81 16 9 N -0.37 -3.30 6.82 33.42 0.23 -3.07 16 10 H 0.44 2.26 8.96 -190.21 -1.71 0.56 16 11 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 12 C -0.14 -1.65 5.99 -104.88 -0.63 -2.27 16 13 C -0.04 -0.42 5.54 -27.80 -0.15 -0.58 16 14 C -0.12 -0.82 5.91 -26.43 -0.16 -0.98 16 15 C -0.11 -0.61 5.89 -26.47 -0.16 -0.76 16 16 C -0.05 -0.24 6.31 -27.67 -0.17 -0.42 16 17 C -0.09 -1.40 2.14 -90.58 -0.19 -1.59 16 18 C -0.13 -2.16 4.96 -26.61 -0.13 -2.29 16 19 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16 20 N -0.60 -14.96 2.85 -172.06 -0.49 -15.45 16 21 C -0.35 -9.72 9.49 -15.06 -0.14 -9.87 16 22 H 0.06 1.57 7.95 -52.49 -0.42 1.15 16 23 C -0.03 -0.75 4.66 -17.43 -0.08 -0.83 16 24 N -0.92 -27.60 12.46 55.49 0.69 -26.91 16 25 Si 1.07 25.53 29.99 -169.99 -5.10 20.43 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.15 3.51 4.72 -3.49 -0.02 3.50 16 30 C -0.13 -2.41 4.83 -26.38 -0.13 -2.53 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.92 6.46 -51.93 -0.34 0.59 16 33 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 34 H 0.41 5.73 6.58 -40.82 -0.27 5.47 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 37 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.16 6.51 -51.93 -0.34 0.82 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.27 8.16 6.69 -40.82 -0.27 7.88 16 49 H 0.01 0.35 7.87 -51.93 -0.41 -0.06 16 50 H 0.08 2.05 6.31 -51.93 -0.33 1.73 16 51 H 0.06 1.24 6.51 -51.93 -0.34 0.91 16 52 H 0.05 0.75 6.46 -51.93 -0.34 0.42 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -33.52 395.48 -11.33 -44.85 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -9.73 Total: 4.30 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -3.10 Total: -7.60 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.55 Total: -58.81 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.52 -11.33 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997656865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.503 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds