Wall clock time and date at job start Wed Apr 1 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 N 1.46494 * 109.46999 * 240.00155 * 2 1 3 5 5 C 1.34779 * 120.00241 * 85.00135 * 4 2 1 6 6 O 1.21566 * 120.00008 * 359.97438 * 5 4 2 7 7 C 1.47710 * 119.99940 * 179.97438 * 5 4 2 8 8 N 1.32210 * 126.68002 * 359.68332 * 7 5 4 9 9 N 1.28842 * 110.15094 * 179.84470 * 8 7 5 10 10 H 0.97002 * 124.97785 * 180.08321 * 9 8 7 11 11 C 1.34316 * 110.04083 * 0.36046 * 9 8 7 12 12 C 1.35581 * 107.21494 * 359.85269 * 11 9 8 13 13 C 1.50377 * 124.61606 * 179.77965 * 12 11 9 14 14 C 1.53469 * 108.28738 * 343.76144 * 13 12 11 15 15 C 1.53105 * 109.51678 * 49.47922 * 14 13 12 16 16 C 1.50707 * 128.90238 * 179.88658 * 11 9 8 17 17 C 1.52999 * 109.47222 * 119.99795 * 2 1 3 18 18 C 1.53036 * 109.46312 * 300.00273 * 17 2 1 19 19 C 1.53189 * 109.31608 * 181.38684 * 18 17 2 20 20 N 1.46924 * 108.77173 * 305.36115 * 19 18 17 21 21 C 1.36937 * 120.63200 * 233.58519 * 20 19 18 22 22 H 1.07998 * 120.00002 * 27.81172 * 21 20 19 23 23 C 1.38816 * 120.00353 * 207.80515 * 21 20 19 24 24 N 1.31623 * 119.99605 * 25.85418 * 23 21 20 25 25 Si 1.86798 * 120.00303 * 205.57558 * 23 21 20 26 26 H 1.48496 * 109.47254 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46775 * 120.00140 * 25 23 21 28 28 H 1.48502 * 109.47217 * 239.99955 * 25 23 21 29 29 C 1.46921 * 118.74129 * 53.86338 * 20 19 18 30 30 C 1.53045 * 109.45810 * 60.06905 * 17 2 1 31 31 H 1.08994 * 109.47010 * 59.99860 * 1 2 3 32 32 H 1.09000 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47117 * 300.00065 * 1 2 3 34 34 H 0.97006 * 120.00073 * 264.99907 * 4 2 1 35 35 H 1.09002 * 109.69548 * 103.46131 * 13 12 11 36 36 H 1.09000 * 109.70647 * 224.06037 * 13 12 11 37 37 H 1.09004 * 109.46444 * 289.46536 * 14 13 12 38 38 H 1.09003 * 109.46791 * 169.49951 * 14 13 12 39 39 H 1.08997 * 109.44840 * 169.89301 * 15 14 13 40 40 H 1.09003 * 109.43685 * 50.00253 * 15 14 13 41 41 H 1.08996 * 109.69501 * 283.03079 * 16 11 9 42 42 H 1.09000 * 109.69500 * 43.61166 * 16 11 9 43 43 H 1.08999 * 109.45200 * 180.02562 * 17 2 1 44 44 H 1.09001 * 109.49887 * 61.43314 * 18 17 2 45 45 H 1.09006 * 109.49636 * 301.33768 * 18 17 2 46 46 H 1.09005 * 109.58901 * 185.57907 * 19 18 17 47 47 H 1.08993 * 109.58830 * 65.15058 * 19 18 17 48 48 H 0.96999 * 119.99925 * 4.04910 * 24 23 21 49 49 H 1.08995 * 109.59060 * 65.92401 * 29 20 19 50 50 H 1.08997 * 109.59199 * 186.35374 * 29 20 19 51 51 H 1.08999 * 109.49721 * 298.56498 * 30 17 2 52 52 H 1.08996 * 109.49889 * 58.66112 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1612 -2.4119 7 6 2.6400 -0.7144 -3.5630 8 7 2.9963 -1.9845 -3.6515 9 7 3.3733 -2.2571 -4.8530 10 1 3.6777 -3.1267 -5.1565 11 6 3.2886 -1.1593 -5.6222 12 6 2.8271 -0.1543 -4.8378 13 6 2.5896 1.2547 -5.3062 14 6 3.3226 1.4486 -6.6406 15 6 2.9749 0.2965 -7.5872 16 6 3.6234 -0.9990 -7.0828 17 6 2.0401 -0.7212 1.2492 18 6 1.5298 0.0004 2.4986 19 6 2.0707 -0.7039 3.7469 20 7 1.7086 -2.1263 3.6815 21 6 1.0456 -2.7259 4.7188 22 1 0.4020 -2.1405 5.3587 23 6 1.2005 -4.0862 4.9479 24 7 2.2982 -4.6985 4.5573 25 14 -0.1456 -5.0463 5.8173 26 1 -1.2654 -4.1321 6.1566 27 1 -0.6405 -6.1243 4.9239 28 1 0.3991 -5.6460 7.0619 29 6 2.0770 -2.8947 2.4847 30 6 1.5312 -2.1646 1.2481 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 1.5214 1.4202 -5.4463 36 1 2.9772 1.9575 -4.5687 37 1 4.3984 1.4627 -6.4654 38 1 3.0156 2.3931 -7.0899 39 1 3.3465 0.5232 -8.5865 40 1 1.8928 0.1705 -7.6230 41 1 4.7047 -0.9411 -7.2077 42 1 3.2333 -1.8478 -7.6444 43 1 3.1301 -0.7206 1.2491 44 1 0.4401 -0.0216 2.5119 45 1 1.8732 1.0349 2.4870 46 1 1.6317 -0.2557 4.6384 47 1 3.1555 -0.6041 3.7816 48 1 3.0233 -4.1892 4.1627 49 1 3.1623 -2.9701 2.4185 50 1 1.6423 -3.8926 2.5429 51 1 0.4415 -2.1661 1.2732 52 1 1.8755 -2.6710 0.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997656865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:53 Heat of formation + Delta-G solvation = 10.568490 kcal Electronic energy + Delta-G solvation = -30998.330219 eV Core-core repulsion = 26997.660385 eV Total energy + Delta-G solvation = -4000.669834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.88358 -41.00522 -39.53041 -37.84232 -36.99265 -34.69935 -33.74666 -32.53942 -31.74411 -30.93793 -30.62601 -29.95126 -27.09052 -25.82180 -24.72092 -24.50904 -23.91707 -23.08280 -22.09426 -21.12251 -20.27283 -19.99460 -19.28623 -18.75792 -18.09700 -17.19907 -16.88833 -16.29313 -16.11774 -15.81117 -15.69976 -15.41530 -15.39183 -15.23108 -14.88485 -14.70420 -14.55698 -14.34840 -14.12241 -14.06418 -13.97611 -13.55044 -13.43428 -12.99530 -12.94928 -12.68716 -12.65668 -12.45732 -11.94143 -11.88630 -11.87746 -11.73561 -11.70729 -11.67634 -11.63634 -11.59176 -11.33224 -11.07968 -10.98606 -10.47550 -10.44024 -10.08769 -9.64800 -8.91022 -8.26328 -5.37818 0.45473 1.06290 1.57893 1.65624 1.81882 1.82001 2.18754 2.30329 2.65495 3.21721 3.32365 3.53731 3.62167 3.71118 3.78456 3.85788 3.94405 4.04451 4.17765 4.27438 4.28982 4.34542 4.34803 4.46631 4.51949 4.54793 4.58950 4.65708 4.68001 4.74927 4.80117 4.88429 4.94205 4.97676 5.04812 5.06867 5.11470 5.13175 5.14239 5.22776 5.24246 5.24868 5.27237 5.32245 5.45882 5.47452 5.49902 5.60403 5.86145 6.08356 6.39804 6.41525 6.81949 7.07594 7.11522 7.79867 8.24722 9.00326 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.002210 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.264859 B =12668.879195 C =13478.626121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.084 0.916 4 N -0.706 5.706 5 C 0.600 3.400 6 O -0.561 6.561 7 C -0.035 4.035 8 N -0.279 5.279 9 N -0.357 5.357 10 H 0.461 0.539 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.042 4.042 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.046 4.046 17 C -0.074 4.074 18 C -0.114 4.114 19 C 0.142 3.858 20 N -0.617 5.617 21 C -0.352 4.352 22 H 0.050 0.950 23 C -0.078 4.078 24 N -0.944 5.944 25 Si 1.118 2.882 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.292 1.292 29 C 0.157 3.843 30 C -0.116 4.116 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.408 0.592 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.012 0.988 48 H 0.254 0.746 49 H 0.001 0.999 50 H 0.043 0.957 51 H 0.062 0.938 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 9.144 -28.458 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.102 0.898 4 N -0.357 5.357 5 C 0.386 3.614 6 O -0.438 6.438 7 C -0.193 4.193 8 N -0.116 5.116 9 N -0.072 5.072 10 H 0.309 0.691 11 C -0.102 4.102 12 C -0.180 4.180 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.084 4.084 17 C -0.093 4.093 18 C -0.153 4.153 19 C 0.017 3.983 20 N -0.342 5.342 21 C -0.482 4.482 22 H 0.068 0.932 23 C -0.274 4.274 24 N -0.586 5.586 25 Si 0.943 3.057 26 H -0.199 1.199 27 H -0.213 1.213 28 H -0.219 1.219 29 C 0.031 3.969 30 C -0.155 4.155 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.030 0.970 48 H 0.064 0.936 49 H 0.019 0.981 50 H 0.062 0.938 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.842 7.550 -27.269 28.355 hybrid contribution 0.899 1.018 -0.266 1.384 sum 2.740 8.569 -27.536 28.968 Atomic orbital electron populations 1.22177 0.94659 1.02338 1.02307 1.20943 0.94616 0.96419 0.82761 0.89803 1.46057 1.65924 1.14650 1.09065 1.17142 0.76842 0.85492 0.81959 1.90732 1.52055 1.15977 1.85049 1.21579 1.09963 0.91755 0.96004 1.73801 1.17337 1.16623 1.03841 1.43092 1.46443 1.12682 1.05028 0.69053 1.21714 1.04569 0.86358 0.97554 1.20183 1.07693 0.98710 0.91451 1.19959 1.00588 0.89942 0.97530 1.21662 1.00316 0.99723 0.93757 1.21590 1.01050 0.92777 0.99672 1.20462 1.02838 1.00461 0.84656 1.21168 0.99749 0.94816 0.93613 1.21930 1.01099 0.98777 0.93541 1.21044 0.95972 0.84389 0.96904 1.44383 1.67631 1.06691 1.15482 1.20250 1.22373 0.95236 1.10354 0.93225 1.27173 1.01819 0.97061 1.01395 1.70854 1.04323 1.39892 1.43523 0.82817 0.73173 0.74667 0.75055 1.19880 1.21348 1.21880 1.20874 0.94967 0.94930 0.86097 1.22048 1.00791 0.95461 0.97204 0.93002 0.92378 0.90416 0.75462 0.91584 0.92154 0.91539 0.90027 0.88250 0.91856 0.87947 0.87680 0.91717 0.91533 0.89944 0.93020 0.97049 0.93637 0.98094 0.93806 0.91983 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.78 71.98 0.63 -3.73 16 2 C 0.16 4.52 2.40 44.99 0.11 4.63 16 3 H 0.08 2.50 7.58 -2.39 -0.02 2.49 16 4 N -0.71 -20.32 4.99 -445.54 -2.23 -22.55 16 5 C 0.60 18.56 7.79 86.75 0.68 19.23 16 6 O -0.56 -19.69 15.47 -3.92 -0.06 -19.75 16 7 C -0.03 -0.95 7.12 42.14 0.30 -0.65 16 8 N -0.28 -6.67 11.96 -48.62 -0.58 -7.25 16 9 N -0.36 -5.63 6.82 -48.18 -0.33 -5.96 16 10 H 0.46 3.54 8.96 -219.80 -1.97 1.56 16 11 C 0.03 0.41 7.12 41.57 0.30 0.70 16 12 C -0.17 -3.82 5.99 -20.03 -0.12 -3.94 16 13 C -0.04 -0.84 5.54 29.90 0.17 -0.67 16 14 C -0.12 -1.37 5.91 30.79 0.18 -1.19 16 15 C -0.11 -0.83 5.89 30.76 0.18 -0.64 16 16 C -0.05 -0.30 6.31 29.98 0.19 -0.11 16 17 C -0.07 -2.37 2.14 -10.77 -0.02 -2.40 16 18 C -0.11 -3.77 4.96 30.67 0.15 -3.62 16 19 C 0.14 5.98 6.51 86.36 0.56 6.54 16 20 N -0.62 -31.32 2.85 -698.28 -1.99 -33.31 16 21 C -0.35 -20.01 9.49 84.03 0.80 -19.21 16 22 H 0.05 2.83 7.95 -2.91 -0.02 2.81 16 23 C -0.08 -4.53 4.66 84.86 0.40 -4.13 16 24 N -0.94 -58.32 12.46 21.65 0.27 -58.05 16 25 Si 1.12 51.87 29.99 68.60 2.06 53.92 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 29 C 0.16 7.47 4.72 86.51 0.41 7.88 16 30 C -0.12 -4.22 4.83 30.82 0.15 -4.07 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.66 6.46 -2.39 -0.02 1.64 16 33 H 0.08 2.04 6.46 -2.39 -0.02 2.02 16 34 H 0.41 11.37 6.58 -92.70 -0.61 10.76 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 37 H 0.07 0.76 8.12 -2.38 -0.02 0.74 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.06 0.56 8.12 -2.39 -0.02 0.54 16 41 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.07 2.23 6.51 -2.39 -0.02 2.21 16 45 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.25 16.01 6.69 -92.71 -0.62 15.39 16 49 H 0.00 0.05 7.87 -2.39 -0.02 0.04 16 50 H 0.04 2.37 6.31 -2.39 -0.02 2.36 16 51 H 0.06 2.32 6.51 -2.39 -0.02 2.31 16 52 H 0.06 2.11 6.46 -2.39 -0.02 2.09 16 Total: -1.00 -75.23 395.48 0.71 -74.52 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -1.48 Total: 23.80 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.05 Total: -5.38 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -4.85 Total: -127.12 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.06 Total: -19.75 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.06 Total: 53.92 kcal Total: -75.23 0.71 -74.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997656865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.090 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds