Wall clock time and date at job start Wed Apr 1 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 N 1.46506 * 109.47220 * 240.00467 * 2 1 3 5 5 C 1.34778 * 119.99924 * 85.00106 * 4 2 1 6 6 O 1.21285 * 120.00193 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99702 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.67961 * 299.48133 * 7 5 4 9 9 C 1.53394 * 109.68235 * 178.92332 * 7 5 4 10 10 C 1.53127 * 109.44915 * 190.62027 * 9 7 5 11 11 C 1.53348 * 109.53011 * 70.00448 * 10 9 7 12 12 C 1.50864 * 108.41622 * 310.01659 * 11 10 9 13 13 N 1.33577 * 128.03696 * 196.70337 * 12 11 10 14 14 C 1.30755 * 109.14776 * 179.97438 * 13 12 11 15 15 N 1.35306 * 108.76724 * 0.25422 * 14 13 12 16 16 H 0.97002 * 126.49897 * 179.81877 * 15 14 13 17 17 C 1.35029 * 123.98822 * 16.70347 * 12 11 10 18 18 C 1.52998 * 109.47198 * 120.00281 * 2 1 3 19 19 C 1.53040 * 109.45920 * 60.07028 * 18 2 1 20 20 C 1.53197 * 109.31224 * 178.61574 * 19 18 2 21 21 N 1.46932 * 108.77273 * 54.63262 * 20 19 18 22 22 C 1.36930 * 120.62670 * 126.37265 * 21 20 19 23 23 H 1.08000 * 120.00464 * 207.69674 * 22 21 20 24 24 C 1.38819 * 120.00116 * 27.69651 * 22 21 20 25 25 N 1.31613 * 119.99920 * 17.35113 * 24 22 21 26 26 Si 1.86806 * 119.99866 * 197.35118 * 24 22 21 27 27 H 1.48502 * 109.46903 * 90.00015 * 26 24 22 28 28 H 1.48495 * 109.47016 * 209.99935 * 26 24 22 29 29 H 1.48505 * 109.47024 * 329.99988 * 26 24 22 30 30 C 1.46924 * 118.74102 * 306.39082 * 21 20 19 31 31 C 1.53042 * 109.45804 * 300.00193 * 18 2 1 32 32 H 1.09002 * 109.46657 * 59.99810 * 1 2 3 33 33 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47050 * 299.99635 * 1 2 3 35 35 H 0.96994 * 119.99754 * 265.00168 * 4 2 1 36 36 H 1.08999 * 109.47471 * 310.61353 * 9 7 5 37 37 H 1.09005 * 109.47648 * 70.62259 * 9 7 5 38 38 H 1.09002 * 109.46159 * 190.02113 * 10 9 7 39 39 H 1.08996 * 109.46123 * 309.98523 * 10 9 7 40 40 H 1.09004 * 109.67979 * 69.74990 * 11 10 9 41 41 H 1.09008 * 109.67689 * 190.25078 * 11 10 9 42 42 H 1.07999 * 125.61273 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46103 * 180.02562 * 18 2 1 44 44 H 1.08997 * 109.49579 * 298.56110 * 19 18 2 45 45 H 1.08995 * 109.49717 * 58.66425 * 19 18 2 46 46 H 1.09004 * 109.58215 * 294.84714 * 20 19 18 47 47 H 1.08995 * 109.58539 * 174.41966 * 20 19 18 48 48 H 0.97000 * 119.99681 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.58805 * 293.82719 * 30 21 20 50 50 H 1.09001 * 109.58532 * 173.39826 * 30 21 20 51 51 H 1.08997 * 109.49631 * 301.33458 * 31 18 2 52 52 H 1.08993 * 109.49844 * 61.43147 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1472 -0.0181 -2.3572 6 8 1.8583 1.1586 -2.4117 7 6 2.6489 -0.7285 -3.5877 8 1 3.6519 -1.1146 -3.4054 9 6 2.6772 0.2463 -4.7717 10 6 2.9296 -0.5312 -6.0665 11 6 1.6947 -1.3741 -6.4074 12 6 1.2963 -2.1542 -5.1791 13 7 0.4915 -3.2178 -5.1047 14 6 0.4016 -3.6012 -3.8578 15 7 1.1537 -2.7761 -3.0934 16 1 1.2685 -2.8258 -2.1315 17 6 1.7221 -1.8657 -3.9306 18 6 2.0400 -0.7213 1.2492 19 6 1.5312 -2.1646 1.2480 20 6 2.0721 -2.8936 2.4821 21 7 1.7086 -2.1265 3.6814 22 6 1.0448 -2.7259 4.7182 23 1 0.4023 -2.1401 5.3589 24 6 1.1975 -4.0868 4.9459 25 7 2.2111 -4.7338 4.4111 26 14 -0.0359 -4.9996 6.0114 27 1 -1.1370 -5.5180 5.1605 28 1 0.6406 -6.1337 6.6907 29 1 -0.5916 -4.0728 7.0300 30 6 2.0706 -0.7041 3.7469 31 6 1.5297 0.0003 2.4986 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.2491 -1.6317 -1.1528 36 1 1.7202 0.7638 -4.8393 37 1 3.4745 0.9747 -4.6239 38 1 3.1265 0.1691 -6.8782 39 1 3.7911 -1.1859 -5.9349 40 1 0.8759 -0.7206 -6.7086 41 1 1.9325 -2.0622 -7.2187 42 1 -0.1803 -4.4364 -3.4971 43 1 3.1300 -0.7208 1.2492 44 1 0.4415 -2.1662 1.2731 45 1 1.8756 -2.6710 0.3463 46 1 3.1571 -2.9723 2.4136 47 1 1.6341 -3.8900 2.5390 48 1 2.3176 -5.6848 4.5699 49 1 3.1555 -0.6043 3.7815 50 1 1.6317 -0.2560 4.6384 51 1 1.8731 1.0347 2.4871 52 1 0.4401 -0.0217 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997749976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:35 Heat of formation + Delta-G solvation = 23.082670 kcal Electronic energy + Delta-G solvation = -31834.782890 eV Core-core repulsion = 27834.655712 eV Total energy + Delta-G solvation = -4000.127178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.62987 -40.15228 -38.34628 -36.63335 -35.38718 -33.72639 -32.81771 -31.21112 -30.27072 -30.13108 -29.15674 -28.80862 -25.64087 -24.75633 -23.34245 -22.61431 -22.38357 -21.90026 -20.82589 -20.49906 -19.15957 -18.80770 -18.20911 -17.23850 -16.79702 -16.06632 -15.79220 -15.06056 -14.95519 -14.92112 -14.57329 -14.42202 -14.13982 -13.84688 -13.78686 -13.69789 -13.57355 -13.12027 -12.89139 -12.70803 -12.56193 -12.35518 -12.22863 -11.76033 -11.61952 -11.49461 -11.32025 -11.20309 -11.15307 -10.93904 -10.80845 -10.60532 -10.41466 -10.30098 -10.22951 -10.08263 -9.98697 -9.85319 -9.67420 -9.49178 -9.17256 -8.55369 -8.38972 -6.76723 -5.87643 -3.29529 1.72207 2.41450 2.81109 2.88145 3.05405 3.31337 3.39133 3.39928 4.19572 4.27746 4.42212 4.47011 4.52270 4.73868 4.89215 4.95701 5.01778 5.05308 5.10498 5.17838 5.21059 5.30367 5.36521 5.41453 5.51641 5.60382 5.62906 5.68771 5.72057 5.76821 5.85395 5.89070 5.98416 6.00328 6.01467 6.08459 6.13559 6.20100 6.31876 6.38377 6.47849 6.50664 6.59024 6.62970 6.71888 6.90316 7.09880 7.22174 7.29688 7.52012 7.71770 7.85036 8.01349 8.36099 9.12902 9.76232 10.32628 11.20884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002759 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.048258 B =10147.658571 C =11301.037605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.085 0.915 4 N -0.725 5.725 5 C 0.517 3.483 6 O -0.530 6.530 7 C -0.029 4.029 8 H 0.109 0.891 9 C -0.094 4.094 10 C -0.118 4.118 11 C -0.036 4.036 12 C 0.019 3.981 13 N -0.487 5.487 14 C 0.190 3.810 15 N -0.558 5.558 16 H 0.418 0.582 17 C -0.028 4.028 18 C -0.086 4.086 19 C -0.136 4.136 20 C 0.172 3.828 21 N -0.591 5.591 22 C -0.252 4.252 23 H 0.066 0.934 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.145 3.855 31 C -0.126 4.126 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.391 0.609 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.211 0.789 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.016 0.984 47 H 0.088 0.912 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 6.743 -18.421 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.103 0.897 4 N -0.378 5.378 5 C 0.303 3.697 6 O -0.406 6.406 7 C -0.052 4.052 8 H 0.127 0.873 9 C -0.133 4.133 10 C -0.156 4.156 11 C -0.074 4.074 12 C -0.112 4.112 13 N -0.206 5.206 14 C -0.093 4.093 15 N -0.162 5.162 16 H 0.257 0.743 17 C -0.144 4.144 18 C -0.106 4.106 19 C -0.175 4.175 20 C 0.046 3.954 21 N -0.314 5.314 22 C -0.381 4.381 23 H 0.084 0.916 24 C -0.197 4.197 25 N -0.548 5.548 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.019 3.981 31 C -0.165 4.165 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.228 0.772 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.716 7.051 -19.095 20.368 hybrid contribution -0.079 -0.958 1.949 2.173 sum 0.637 6.093 -17.146 18.208 Atomic orbital electron populations 1.22222 0.95267 1.02355 1.02162 1.21162 0.94248 0.96986 0.83512 0.89692 1.46390 1.67389 1.13725 1.10283 1.20504 0.77598 0.87420 0.84218 1.90702 1.49311 1.15758 1.84820 1.19955 0.97954 0.92547 0.94715 0.87291 1.21416 1.04165 0.96259 0.91440 1.21639 0.97824 0.98777 0.97357 1.19979 0.97536 0.96679 0.93199 1.20504 0.99932 0.96869 0.93865 1.70028 1.19005 1.12922 1.18595 1.25132 0.99288 0.98623 0.86302 1.43127 1.37643 1.24591 1.10813 0.74262 1.20442 1.05466 0.97013 0.91519 1.21335 1.00110 0.96179 0.92927 1.22309 1.01156 0.94556 0.99477 1.20752 0.96323 0.95809 0.82560 1.44027 1.66766 1.04713 1.15857 1.19207 1.19231 0.91999 1.07711 0.91633 1.25030 0.97110 0.98237 0.99285 1.70027 1.27826 1.08883 1.48056 0.86296 0.80934 0.79525 0.80069 1.21463 1.21751 1.20410 1.20902 0.96276 0.86258 0.94706 1.22070 1.01146 0.97724 0.95586 0.92975 0.92198 0.90979 0.77359 0.90235 0.90262 0.90500 0.91416 0.90503 0.90304 0.77237 0.91334 0.91888 0.94743 0.96568 0.89421 0.93643 0.96535 0.92679 0.92931 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.78 37.16 0.33 -1.77 16 2 C 0.14 1.87 2.40 -67.93 -0.16 1.71 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 4 N -0.72 -8.27 4.54 -53.80 -0.24 -8.51 16 5 C 0.52 6.35 7.11 -10.99 -0.08 6.28 16 6 O -0.53 -8.23 15.50 5.55 0.09 -8.15 16 7 C -0.03 -0.29 2.90 -92.74 -0.27 -0.55 16 8 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.09 -0.85 4.67 -26.46 -0.12 -0.97 16 10 C -0.12 -0.85 5.90 -26.49 -0.16 -1.01 16 11 C -0.04 -0.32 6.30 -27.62 -0.17 -0.49 16 12 C 0.02 0.22 6.98 -82.89 -0.58 -0.36 16 13 N -0.49 -6.15 11.25 -10.74 -0.12 -6.27 16 14 C 0.19 1.94 13.05 -89.92 -1.17 0.77 16 15 N -0.56 -5.45 5.89 -10.28 -0.06 -5.51 16 16 H 0.42 3.52 6.77 -40.82 -0.28 3.25 16 17 C -0.03 -0.30 6.32 -81.85 -0.52 -0.82 16 18 C -0.09 -1.25 2.14 -90.58 -0.19 -1.45 16 19 C -0.14 -2.17 4.81 -26.61 -0.13 -2.30 16 20 C 0.17 3.72 5.31 -3.70 -0.02 3.70 16 21 N -0.59 -13.88 2.99 -172.31 -0.52 -14.39 16 22 C -0.25 -6.62 9.58 -15.06 -0.14 -6.77 16 23 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 24 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 25 N -0.90 -25.16 11.19 55.49 0.62 -24.54 16 26 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 C 0.15 2.85 6.52 -3.71 -0.02 2.82 16 31 C -0.13 -1.97 4.96 -26.61 -0.13 -2.10 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 34 H 0.07 0.92 6.46 -51.93 -0.34 0.59 16 35 H 0.39 3.90 4.83 -40.82 -0.20 3.70 16 36 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 42 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 45 H 0.03 0.45 6.46 -51.93 -0.34 0.12 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 2.16 6.04 -51.93 -0.31 1.85 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 51 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -31.95 392.01 -11.29 -43.24 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.30 Total: 5.59 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.64 Total: -3.35 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.32 Total: -59.23 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.95 -11.29 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997749976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.321 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds