Wall clock time and date at job start Wed Apr 1 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 N 1.46506 * 109.47220 * 240.00467 * 2 1 3 5 5 C 1.34778 * 119.99924 * 85.00106 * 4 2 1 6 6 O 1.21285 * 120.00193 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99702 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.67961 * 299.48133 * 7 5 4 9 9 C 1.53394 * 109.68235 * 178.92332 * 7 5 4 10 10 C 1.53127 * 109.44915 * 190.62027 * 9 7 5 11 11 C 1.53348 * 109.53011 * 70.00448 * 10 9 7 12 12 C 1.50864 * 108.41622 * 310.01659 * 11 10 9 13 13 N 1.33577 * 128.03696 * 196.70337 * 12 11 10 14 14 C 1.30755 * 109.14776 * 179.97438 * 13 12 11 15 15 N 1.35306 * 108.76724 * 0.25422 * 14 13 12 16 16 H 0.97002 * 126.49897 * 179.81877 * 15 14 13 17 17 C 1.35029 * 123.98822 * 16.70347 * 12 11 10 18 18 C 1.52998 * 109.47198 * 120.00281 * 2 1 3 19 19 C 1.53040 * 109.45920 * 60.07028 * 18 2 1 20 20 C 1.53197 * 109.31224 * 178.61574 * 19 18 2 21 21 N 1.46932 * 108.77273 * 54.63262 * 20 19 18 22 22 C 1.36930 * 120.62670 * 126.37265 * 21 20 19 23 23 H 1.08000 * 120.00464 * 207.69674 * 22 21 20 24 24 C 1.38819 * 120.00116 * 27.69651 * 22 21 20 25 25 N 1.31613 * 119.99920 * 17.35113 * 24 22 21 26 26 Si 1.86806 * 119.99866 * 197.35118 * 24 22 21 27 27 H 1.48502 * 109.46903 * 90.00015 * 26 24 22 28 28 H 1.48495 * 109.47016 * 209.99935 * 26 24 22 29 29 H 1.48505 * 109.47024 * 329.99988 * 26 24 22 30 30 C 1.46924 * 118.74102 * 306.39082 * 21 20 19 31 31 C 1.53042 * 109.45804 * 300.00193 * 18 2 1 32 32 H 1.09002 * 109.46657 * 59.99810 * 1 2 3 33 33 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47050 * 299.99635 * 1 2 3 35 35 H 0.96994 * 119.99754 * 265.00168 * 4 2 1 36 36 H 1.08999 * 109.47471 * 310.61353 * 9 7 5 37 37 H 1.09005 * 109.47648 * 70.62259 * 9 7 5 38 38 H 1.09002 * 109.46159 * 190.02113 * 10 9 7 39 39 H 1.08996 * 109.46123 * 309.98523 * 10 9 7 40 40 H 1.09004 * 109.67979 * 69.74990 * 11 10 9 41 41 H 1.09008 * 109.67689 * 190.25078 * 11 10 9 42 42 H 1.07999 * 125.61273 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46103 * 180.02562 * 18 2 1 44 44 H 1.08997 * 109.49579 * 298.56110 * 19 18 2 45 45 H 1.08995 * 109.49717 * 58.66425 * 19 18 2 46 46 H 1.09004 * 109.58215 * 294.84714 * 20 19 18 47 47 H 1.08995 * 109.58539 * 174.41966 * 20 19 18 48 48 H 0.97000 * 119.99681 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.58805 * 293.82719 * 30 21 20 50 50 H 1.09001 * 109.58532 * 173.39826 * 30 21 20 51 51 H 1.08997 * 109.49631 * 301.33458 * 31 18 2 52 52 H 1.08993 * 109.49844 * 61.43147 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1472 -0.0181 -2.3572 6 8 1.8583 1.1586 -2.4117 7 6 2.6489 -0.7285 -3.5877 8 1 3.6519 -1.1146 -3.4054 9 6 2.6772 0.2463 -4.7717 10 6 2.9296 -0.5312 -6.0665 11 6 1.6947 -1.3741 -6.4074 12 6 1.2963 -2.1542 -5.1791 13 7 0.4915 -3.2178 -5.1047 14 6 0.4016 -3.6012 -3.8578 15 7 1.1537 -2.7761 -3.0934 16 1 1.2685 -2.8258 -2.1315 17 6 1.7221 -1.8657 -3.9306 18 6 2.0400 -0.7213 1.2492 19 6 1.5312 -2.1646 1.2480 20 6 2.0721 -2.8936 2.4821 21 7 1.7086 -2.1265 3.6814 22 6 1.0448 -2.7259 4.7182 23 1 0.4023 -2.1401 5.3589 24 6 1.1975 -4.0868 4.9459 25 7 2.2111 -4.7338 4.4111 26 14 -0.0359 -4.9996 6.0114 27 1 -1.1370 -5.5180 5.1605 28 1 0.6406 -6.1337 6.6907 29 1 -0.5916 -4.0728 7.0300 30 6 2.0706 -0.7041 3.7469 31 6 1.5297 0.0003 2.4986 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.2491 -1.6317 -1.1528 36 1 1.7202 0.7638 -4.8393 37 1 3.4745 0.9747 -4.6239 38 1 3.1265 0.1691 -6.8782 39 1 3.7911 -1.1859 -5.9349 40 1 0.8759 -0.7206 -6.7086 41 1 1.9325 -2.0622 -7.2187 42 1 -0.1803 -4.4364 -3.4971 43 1 3.1300 -0.7208 1.2492 44 1 0.4415 -2.1662 1.2731 45 1 1.8756 -2.6710 0.3463 46 1 3.1571 -2.9723 2.4136 47 1 1.6341 -3.8900 2.5390 48 1 2.3176 -5.6848 4.5699 49 1 3.1555 -0.6043 3.7815 50 1 1.6317 -0.2560 4.6384 51 1 1.8731 1.0347 2.4871 52 1 0.4401 -0.0217 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997749976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:33 Heat of formation + Delta-G solvation = 5.146013 kcal Electronic energy + Delta-G solvation = -31835.560682 eV Core-core repulsion = 27834.655712 eV Total energy + Delta-G solvation = -4000.904970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.41532 -41.18580 -39.63889 -37.49102 -36.70930 -34.82480 -34.11710 -32.63399 -31.65119 -31.18108 -30.14596 -29.85782 -27.19191 -25.79617 -24.63635 -23.98212 -23.19111 -22.85831 -22.01478 -21.63691 -20.21111 -19.88051 -19.06280 -18.61859 -18.10081 -17.12261 -16.84795 -16.63140 -15.97240 -15.73621 -15.65839 -15.57035 -15.35789 -15.25193 -14.91220 -14.71665 -14.52674 -14.40503 -14.13263 -14.05311 -13.57770 -13.51655 -13.17848 -13.00281 -12.97505 -12.93745 -12.58746 -12.48407 -12.20989 -12.18371 -11.94472 -11.84627 -11.82359 -11.75668 -11.57793 -11.33761 -11.17094 -11.02064 -10.88085 -10.70754 -10.52950 -10.21242 -9.18014 -8.67558 -7.87987 -5.31900 0.93012 1.45798 1.47762 1.47952 1.55689 1.96786 2.08516 2.19026 2.50654 3.26063 3.47063 3.49353 3.65913 3.70341 3.76969 3.84829 3.86134 3.99988 4.09203 4.27480 4.33323 4.34564 4.38525 4.42777 4.51714 4.53785 4.58767 4.68665 4.69393 4.73007 4.90340 4.92752 4.97469 4.99857 5.01196 5.11243 5.14563 5.17918 5.20500 5.24084 5.27435 5.28213 5.39777 5.41514 5.46394 5.56405 5.66568 5.74957 5.79974 6.33385 6.39086 6.39597 7.05722 7.07083 7.16057 7.87836 8.38141 9.17796 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002759 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.048258 B =10147.658571 C =11301.037605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.080 0.920 4 N -0.718 5.718 5 C 0.518 3.482 6 O -0.563 6.563 7 C -0.023 4.023 8 H 0.132 0.868 9 C -0.093 4.093 10 C -0.108 4.108 11 C -0.038 4.038 12 C -0.001 4.001 13 N -0.522 5.522 14 C 0.189 3.811 15 N -0.555 5.555 16 H 0.424 0.576 17 C -0.035 4.035 18 C -0.076 4.076 19 C -0.121 4.121 20 C 0.176 3.824 21 N -0.609 5.609 22 C -0.260 4.260 23 H 0.064 0.936 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.961 3.039 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.272 1.272 30 C 0.140 3.860 31 C -0.116 4.116 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.239 0.761 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.066 0.934 46 H -0.006 1.006 47 H 0.054 0.946 48 H 0.249 0.751 49 H 0.011 0.989 50 H 0.051 0.949 51 H 0.078 0.922 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 7.330 -19.454 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.098 0.902 4 N -0.371 5.371 5 C 0.305 3.695 6 O -0.442 6.442 7 C -0.046 4.046 8 H 0.149 0.851 9 C -0.131 4.131 10 C -0.146 4.146 11 C -0.076 4.076 12 C -0.131 4.131 13 N -0.242 5.242 14 C -0.094 4.094 15 N -0.159 5.159 16 H 0.264 0.736 17 C -0.151 4.151 18 C -0.095 4.095 19 C -0.160 4.160 20 C 0.051 3.949 21 N -0.333 5.333 22 C -0.390 4.390 23 H 0.081 0.919 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.790 3.210 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.197 1.197 30 C 0.015 3.985 31 C -0.155 4.155 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.255 0.745 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.012 0.988 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.660 7.653 -20.131 21.547 hybrid contribution -0.050 -1.120 2.308 2.566 sum 0.610 6.533 -17.824 18.993 Atomic orbital electron populations 1.22167 0.95055 1.02345 1.01900 1.20905 0.94189 0.96508 0.83145 0.90172 1.46287 1.66988 1.14039 1.09754 1.20913 0.76774 0.87027 0.84789 1.90692 1.50783 1.17328 1.85357 1.20012 0.98645 0.92196 0.93709 0.85062 1.21416 1.03387 0.96314 0.91988 1.21601 0.97155 0.98800 0.97035 1.20077 0.98245 0.96717 0.92566 1.20972 0.99984 0.97032 0.95108 1.70028 1.20189 1.13985 1.19988 1.25745 0.98846 0.98917 0.85904 1.43125 1.37403 1.24316 1.11043 0.73570 1.20571 1.05728 0.97307 0.91527 1.21194 0.99942 0.95052 0.93313 1.22085 1.00765 0.95187 0.97919 1.20594 0.94861 0.95010 0.84458 1.44308 1.66846 1.06189 1.15953 1.19492 1.19033 0.92376 1.08117 0.91875 1.25701 0.98656 0.99022 1.00990 1.70168 1.29375 1.08668 1.49667 0.85353 0.78843 0.78096 0.78677 1.21130 1.22362 1.19666 1.21048 0.96082 0.84636 0.96776 1.21935 1.00973 0.98657 0.93941 0.93744 0.92042 0.90744 0.76357 0.92259 0.89431 0.88501 0.90533 0.90783 0.89890 0.74470 0.91426 0.92085 0.91554 0.98759 0.92756 0.94168 0.97059 0.93033 0.90388 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.78 71.98 0.63 -3.10 16 2 C 0.16 3.69 2.40 44.99 0.11 3.80 16 3 H 0.08 2.06 7.58 -2.39 -0.02 2.05 16 4 N -0.72 -14.71 4.54 -442.52 -2.01 -16.72 16 5 C 0.52 11.76 7.11 87.65 0.62 12.38 16 6 O -0.56 -16.75 15.50 -3.05 -0.05 -16.80 16 7 C -0.02 -0.41 2.90 -12.17 -0.04 -0.44 16 8 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 9 C -0.09 -1.50 4.67 30.77 0.14 -1.35 16 10 C -0.11 -1.33 5.90 30.75 0.18 -1.14 16 11 C -0.04 -0.63 6.30 30.02 0.19 -0.44 16 12 C 0.00 -0.02 6.98 41.61 0.29 0.27 16 13 N -0.52 -12.70 11.25 -187.90 -2.11 -14.81 16 14 C 0.19 3.57 13.05 180.10 2.35 5.92 16 15 N -0.55 -9.79 5.89 -186.45 -1.10 -10.89 16 16 H 0.42 6.15 6.77 -92.71 -0.63 5.53 16 17 C -0.03 -0.68 6.32 41.14 0.26 -0.42 16 18 C -0.08 -2.04 2.14 -10.77 -0.02 -2.07 16 19 C -0.12 -3.66 4.81 30.67 0.15 -3.52 16 20 C 0.18 7.68 5.31 86.36 0.46 8.14 16 21 N -0.61 -28.71 2.99 -699.07 -2.09 -30.81 16 22 C -0.26 -13.75 9.58 84.04 0.81 -12.94 16 23 H 0.06 3.30 7.89 -2.91 -0.02 3.27 16 24 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 25 N -0.93 -53.00 11.19 21.65 0.24 -52.76 16 26 Si 0.96 43.55 29.59 68.60 2.03 45.58 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.14 5.41 6.52 86.36 0.56 5.98 16 31 C -0.12 -3.41 4.96 30.67 0.15 -3.26 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.44 6.46 -2.39 -0.02 1.43 16 34 H 0.07 1.74 6.46 -2.39 -0.02 1.73 16 35 H 0.40 6.87 4.83 -92.71 -0.45 6.42 16 36 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 37 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.83 8.11 -2.39 -0.02 0.81 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.24 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.92 6.51 -2.39 -0.02 1.90 16 45 H 0.07 1.58 6.46 -2.39 -0.02 1.56 16 46 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.05 2.73 6.04 -2.39 -0.01 2.71 16 48 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 49 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.06 1.94 6.51 -2.39 -0.02 1.93 16 Total: -1.00 -70.13 392.01 2.04 -68.09 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.13 Total: 23.50 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 7.26 Total: 5.62 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -7.07 Total: -125.99 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.05 Total: -16.80 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.13 2.04 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997749976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.237 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds