Wall clock time and date at job start Wed Apr 1 2020 05:25:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.46837 * 2 1
4 4 N 1.46498 * 109.46815 * 239.99889 * 2 1 3
5 5 C 1.34771 * 119.99999 * 85.00216 * 4 2 1
6 6 O 1.21283 * 120.00309 * 359.97438 * 5 4 2
7 7 C 1.50705 * 119.99677 * 179.97438 * 5 4 2
8 8 H 1.09002 * 109.42710 * 59.88869 * 7 5 4
9 9 C 1.53028 * 109.42267 * 179.71556 * 7 5 4
10 10 C 1.53383 * 109.72577 * 191.80679 * 9 7 5
11 11 C 1.50880 * 108.19364 * 309.47011 * 10 9 7
12 12 C 1.34571 * 128.32277 * 196.72705 * 11 10 9
13 13 N 1.35201 * 107.61467 * 179.71809 * 12 11 10
14 14 H 0.97007 * 125.99797 * 180.02562 * 13 12 11
15 15 N 1.40302 * 107.99513 * 0.04001 * 13 12 11
16 16 C 1.30134 * 108.12338 * 0.04172 * 15 13 12
17 17 C 1.50948 * 128.28406 * 179.85733 * 16 15 13
18 18 C 1.52999 * 109.47073 * 119.99569 * 2 1 3
19 19 C 1.53046 * 109.45932 * 60.06974 * 18 2 1
20 20 C 1.53197 * 109.31237 * 178.60983 * 19 18 2
21 21 N 1.46925 * 108.77119 * 54.63724 * 20 19 18
22 22 C 1.36937 * 120.63077 * 126.41508 * 21 20 19
23 23 H 1.08000 * 119.99762 * 207.65830 * 22 21 20
24 24 C 1.38806 * 120.00051 * 27.65662 * 22 21 20
25 25 N 1.31626 * 119.99938 * 17.37189 * 24 22 21
26 26 Si 1.86798 * 120.00303 * 197.36832 * 24 22 21
27 27 H 1.48497 * 109.46947 * 59.99906 * 26 24 22
28 28 H 1.48495 * 109.47426 * 180.02562 * 26 24 22
29 29 H 1.48504 * 109.47256 * 300.00260 * 26 24 22
30 30 C 1.46933 * 118.73955 * 306.38711 * 21 20 19
31 31 C 1.53040 * 109.46112 * 299.99999 * 18 2 1
32 32 H 1.08994 * 109.47243 * 60.00349 * 1 2 3
33 33 H 1.08997 * 109.46675 * 180.02562 * 1 2 3
34 34 H 1.09004 * 109.46809 * 300.00237 * 1 2 3
35 35 H 0.96998 * 119.99767 * 264.99552 * 4 2 1
36 36 H 1.09010 * 109.43175 * 311.88511 * 9 7 5
37 37 H 1.08999 * 109.43302 * 71.73074 * 9 7 5
38 38 H 1.08998 * 109.72783 * 189.78812 * 10 9 7
39 39 H 1.09002 * 109.74016 * 69.16175 * 10 9 7
40 40 H 1.07997 * 126.19325 * 359.68268 * 12 11 10
41 41 H 1.09002 * 109.71963 * 76.98381 * 17 16 15
42 42 H 1.08999 * 109.72227 * 316.33333 * 17 16 15
43 43 H 1.09003 * 109.45669 * 180.02562 * 18 2 1
44 44 H 1.09001 * 109.49423 * 298.56492 * 19 18 2
45 45 H 1.08999 * 109.49517 * 58.66307 * 19 18 2
46 46 H 1.08994 * 109.58516 * 294.85015 * 20 19 18
47 47 H 1.08997 * 109.58461 * 174.42227 * 20 19 18
48 48 H 0.97002 * 119.99802 * 179.97438 * 25 24 22
49 49 H 1.09002 * 109.58430 * 293.82462 * 30 21 20
50 50 H 1.09001 * 109.58296 * 173.39678 * 30 21 20
51 51 H 1.08997 * 109.50001 * 301.33550 * 31 18 2
52 52 H 1.09000 * 109.49698 * 61.44015 * 31 18 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1470 -0.0183 -2.3571
6 8 1.8582 1.1583 -2.4117
7 6 2.6499 -0.7287 -3.5874
8 1 1.9782 -1.5521 -3.8306
9 6 2.6941 0.2537 -4.7599
10 6 2.9174 -0.5130 -6.0695
11 6 4.1000 -1.4311 -5.8822
12 6 4.8345 -2.0488 -6.8255
13 7 5.7932 -2.7635 -6.1947
14 1 6.4704 -3.3109 -6.6222
15 7 5.6362 -2.5747 -4.8133
16 6 4.6233 -1.7795 -4.6260
17 6 4.0560 -1.2796 -3.3195
18 6 2.0401 -0.7212 1.2493
19 6 1.5312 -2.1645 1.2482
20 6 2.0721 -2.8934 2.4824
21 7 1.7087 -2.1262 3.6816
22 6 1.0456 -2.7258 4.7190
23 1 0.4036 -2.1399 5.3600
24 6 1.1986 -4.0865 4.9465
25 7 2.2123 -4.7334 4.4112
26 14 -0.0340 -4.9997 6.0124
27 1 -1.3874 -4.8863 5.4119
28 1 0.3513 -6.4311 6.0992
29 1 -0.0455 -4.4073 7.3742
30 6 2.0707 -0.7037 3.7469
31 6 1.5298 0.0006 2.4986
32 1 -0.3633 0.5137 -0.8900
33 1 -0.3632 -1.0277 0.0005
34 1 -0.3633 0.5139 0.8900
35 1 2.2490 -1.6318 -1.1525
36 1 1.7504 0.7966 -4.8139
37 1 3.5101 0.9606 -4.6101
38 1 3.1217 0.1899 -6.8771
39 1 2.0304 -1.0998 -6.3084
40 1 4.6848 -1.9855 -7.8932
41 1 4.6912 -0.4882 -2.9215
42 1 3.9992 -2.1007 -2.6050
43 1 3.1301 -0.7206 1.2493
44 1 0.4415 -2.1661 1.2733
45 1 1.8756 -2.6710 0.3466
46 1 3.1571 -2.9721 2.4139
47 1 1.6342 -3.8899 2.5394
48 1 2.3194 -5.6842 4.5706
49 1 3.1556 -0.6040 3.7816
50 1 1.6318 -0.2556 4.6384
51 1 1.8732 1.0350 2.4870
52 1 0.4401 -0.0215 2.5120
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997871927.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:39
Heat of formation + Delta-G solvation = 16.483628 kcal
Electronic energy + Delta-G solvation = -30995.462798 eV
Core-core repulsion = 26995.049464 eV
Total energy + Delta-G solvation = -4000.413334 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-42.42380 -41.14302 -39.58106 -37.26024 -36.60327 -34.51769 -33.24858 -32.62395
-31.62230 -31.48591 -30.11780 -29.36317 -27.13585 -26.16164 -24.86380 -23.95653
-23.31544 -22.03387 -21.87379 -21.11020 -20.14214 -19.80647 -18.61334 -18.50521
-18.01094 -16.99388 -16.78927 -16.38848 -15.93057 -15.71699 -15.64815 -15.41690
-15.15115 -14.92766 -14.74628 -14.65522 -14.44557 -14.07879 -14.03921 -13.80184
-13.72111 -13.46873 -13.12896 -12.92337 -12.85174 -12.83777 -12.51787 -12.43979
-12.32908 -12.16253 -12.11171 -11.92920 -11.82431 -11.67364 -11.50047 -11.20859
-11.16610 -10.95172 -10.67772 -10.48832 -10.36681 -10.00328 -9.30918 -8.64297
-7.84739 -5.28971 1.01043 1.47851 1.49689 1.56535 1.64585 1.79246
2.03786 2.27637 2.53272 3.29171 3.42287 3.69989 3.73223 3.82807
3.89336 3.94855 3.98982 4.09367 4.14210 4.38692 4.42493 4.44274
4.48622 4.49911 4.61386 4.64357 4.67959 4.70285 4.75456 4.83222
4.87769 4.98028 5.00097 5.01919 5.05654 5.11443 5.21619 5.27001
5.28621 5.30246 5.31627 5.37395 5.42110 5.46883 5.57727 5.63003
5.70768 5.73344 5.85034 6.42164 6.52367 6.62038 6.75285 7.18532
7.30175 7.90961 8.41826 9.21062
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.014865 B = 0.002346 C = 0.002128
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1883.129877 B =11930.414888 C =13151.894846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.156 3.844
3 H 0.077 0.923
4 N -0.716 5.716
5 C 0.520 3.480
6 O -0.576 6.576
7 C -0.092 4.092
8 H 0.117 0.883
9 C -0.095 4.095
10 C -0.032 4.032
11 C -0.257 4.257
12 C 0.075 3.925
13 N -0.480 5.480
14 H 0.451 0.549
15 N -0.330 5.330
16 C 0.070 3.930
17 C -0.028 4.028
18 C -0.075 4.075
19 C -0.120 4.120
20 C 0.176 3.824
21 N -0.610 5.610
22 C -0.260 4.260
23 H 0.065 0.935
24 C -0.052 4.052
25 N -0.935 5.935
26 Si 0.964 3.036
27 H -0.278 1.278
28 H -0.295 1.295
29 H -0.277 1.277
30 C 0.140 3.860
31 C -0.116 4.116
32 H 0.050 0.950
33 H 0.060 0.940
34 H 0.070 0.930
35 H 0.408 0.592
36 H 0.074 0.926
37 H 0.056 0.944
38 H 0.090 0.910
39 H 0.083 0.917
40 H 0.218 0.782
41 H 0.081 0.919
42 H 0.092 0.908
43 H 0.064 0.936
44 H 0.059 0.941
45 H 0.068 0.932
46 H -0.008 1.008
47 H 0.052 0.948
48 H 0.249 0.751
49 H 0.010 0.990
50 H 0.052 0.948
51 H 0.077 0.923
52 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.137 7.402 -26.075 27.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.052 3.948
3 H 0.095 0.905
4 N -0.367 5.367
5 C 0.308 3.692
6 O -0.455 6.455
7 C -0.113 4.113
8 H 0.135 0.865
9 C -0.133 4.133
10 C -0.070 4.070
11 C -0.269 4.269
12 C -0.071 4.071
13 N -0.190 5.190
14 H 0.297 0.703
15 N -0.153 5.153
16 C -0.098 4.098
17 C -0.067 4.067
18 C -0.095 4.095
19 C -0.159 4.159
20 C 0.051 3.949
21 N -0.334 5.334
22 C -0.391 4.391
23 H 0.082 0.918
24 C -0.247 4.247
25 N -0.581 5.581
26 Si 0.793 3.207
27 H -0.204 1.204
28 H -0.221 1.221
29 H -0.203 1.203
30 C 0.015 3.985
31 C -0.155 4.155
32 H 0.069 0.931
33 H 0.079 0.921
34 H 0.089 0.911
35 H 0.245 0.755
36 H 0.092 0.908
37 H 0.075 0.925
38 H 0.108 0.892
39 H 0.101 0.899
40 H 0.234 0.766
41 H 0.099 0.901
42 H 0.110 0.890
43 H 0.082 0.918
44 H 0.077 0.923
45 H 0.087 0.913
46 H 0.010 0.990
47 H 0.070 0.930
48 H 0.058 0.942
49 H 0.028 0.972
50 H 0.070 0.930
51 H 0.096 0.904
52 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.894 7.394 -25.516 26.723
hybrid contribution -0.253 -1.152 0.507 1.284
sum 2.640 6.242 -25.009 25.911
Atomic orbital electron populations
1.22165 0.94975 1.02339 1.01972 1.20847 0.94359 0.96229 0.83405
0.90530 1.46229 1.66442 1.14675 1.09395 1.20903 0.76585 0.86798
0.84937 1.90669 1.51924 1.17462 1.85466 1.21301 0.97143 1.00016
0.92868 0.86511 1.21345 1.02721 0.96572 0.92669 1.20004 0.94182
0.95869 0.96924 1.20436 1.05355 1.09670 0.91417 1.22720 0.89900
0.93867 1.00629 1.46411 1.28128 1.40818 1.03629 0.70274 1.76981
1.21173 1.22324 0.94837 1.22339 0.94185 0.96244 0.97042 1.19979
0.93977 1.00746 0.92029 1.21177 0.99716 0.95014 0.93545 1.22070
1.00619 0.95333 0.97906 1.20591 0.94733 0.94984 0.84608 1.44326
1.66901 1.06217 1.15931 1.19473 1.19108 0.92421 1.08059 0.91752
1.25752 0.98756 0.99064 1.01103 1.70186 1.29550 1.08682 1.49690
0.85389 0.79221 0.77166 0.78969 1.20406 1.22134 1.20294 1.21055
0.96000 0.84628 0.96860 1.21936 1.00983 0.98591 0.93972 0.93085
0.92131 0.91089 0.75480 0.90776 0.92535 0.89200 0.89892 0.76574
0.90070 0.89001 0.91784 0.92282 0.91320 0.98958 0.92956 0.94209
0.97224 0.92952 0.90420 0.91647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.94 8.78 71.98 0.63 -3.31 16
2 C 0.16 4.03 2.40 44.99 0.11 4.14 16
3 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16
4 N -0.72 -16.27 4.90 -442.53 -2.17 -18.44 16
5 C 0.52 12.27 7.10 87.66 0.62 12.89 16
6 O -0.58 -17.58 15.43 -3.04 -0.05 -17.63 16
7 C -0.09 -1.63 2.47 -11.40 -0.03 -1.66 16
8 H 0.12 1.74 8.10 -2.39 -0.02 1.72 16
9 C -0.10 -1.59 4.65 30.73 0.14 -1.45 16
10 C -0.03 -0.38 6.28 30.03 0.19 -0.19 16
11 C -0.26 -3.97 5.89 -20.10 -0.12 -4.09 16
12 C 0.08 0.82 11.95 83.33 1.00 1.81 16
13 N -0.48 -6.78 7.37 -57.88 -0.43 -7.21 16
14 H 0.45 3.45 8.96 -213.18 -1.91 1.54 16
15 N -0.33 -7.42 12.68 -47.14 -0.60 -8.02 16
16 C 0.07 1.42 7.10 43.44 0.31 1.73 16
17 C -0.03 -0.53 5.43 30.05 0.16 -0.37 16
18 C -0.08 -2.25 2.14 -10.77 -0.02 -2.27 16
19 C -0.12 -4.10 4.82 30.68 0.15 -3.95 16
20 C 0.18 8.26 5.31 86.36 0.46 8.71 16
21 N -0.61 -30.27 3.00 -699.08 -2.09 -32.37 16
22 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16
23 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16
24 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16
25 N -0.93 -55.28 11.19 21.65 0.24 -55.03 16
26 Si 0.96 44.89 29.59 68.60 2.03 46.92 16
27 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16
29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
30 C 0.14 5.72 6.52 86.36 0.56 6.28 16
31 C -0.12 -3.66 4.96 30.67 0.15 -3.51 16
32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.06 1.54 6.46 -2.39 -0.02 1.53 16
34 H 0.07 1.76 6.46 -2.39 -0.02 1.74 16
35 H 0.41 8.17 6.49 -92.71 -0.60 7.57 16
36 H 0.07 1.33 7.69 -2.38 -0.02 1.31 16
37 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16
38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
40 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16
41 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16
42 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16
43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
44 H 0.06 2.07 6.51 -2.39 -0.02 2.05 16
45 H 0.07 1.97 6.46 -2.39 -0.02 1.95 16
46 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
47 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16
48 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16
49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
50 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16
51 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
52 H 0.06 2.09 6.51 -2.39 -0.02 2.08 16
Total: -1.00 -73.60 396.28 0.90 -72.70
By element:
Atomic # 1 Polarization: 21.81 SS G_CDS: -1.57 Total: 20.24 kcal
Atomic # 6 Polarization: -6.70 SS G_CDS: 5.54 Total: -1.16 kcal
Atomic # 7 Polarization: -116.02 SS G_CDS: -5.04 Total: -121.07 kcal
Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -73.60 0.90 -72.70 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997871927.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.180 kcal
(2) G-P(sol) polarization free energy of solvation -73.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds