Wall clock time and date at job start Wed Apr 1 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46837 * 2 1 4 4 N 1.46498 * 109.46815 * 239.99889 * 2 1 3 5 5 C 1.34771 * 119.99999 * 85.00216 * 4 2 1 6 6 O 1.21283 * 120.00309 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99677 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.42710 * 59.88869 * 7 5 4 9 9 C 1.53028 * 109.42267 * 179.71556 * 7 5 4 10 10 C 1.53383 * 109.72577 * 191.80679 * 9 7 5 11 11 C 1.50880 * 108.19364 * 309.47011 * 10 9 7 12 12 C 1.34571 * 128.32277 * 196.72705 * 11 10 9 13 13 N 1.35201 * 107.61467 * 179.71809 * 12 11 10 14 14 H 0.97007 * 125.99797 * 180.02562 * 13 12 11 15 15 N 1.40302 * 107.99513 * 0.04001 * 13 12 11 16 16 C 1.30134 * 108.12338 * 0.04172 * 15 13 12 17 17 C 1.50948 * 128.28406 * 179.85733 * 16 15 13 18 18 C 1.52999 * 109.47073 * 119.99569 * 2 1 3 19 19 C 1.53046 * 109.45932 * 60.06974 * 18 2 1 20 20 C 1.53197 * 109.31237 * 178.60983 * 19 18 2 21 21 N 1.46925 * 108.77119 * 54.63724 * 20 19 18 22 22 C 1.36937 * 120.63077 * 126.41508 * 21 20 19 23 23 H 1.08000 * 119.99762 * 207.65830 * 22 21 20 24 24 C 1.38806 * 120.00051 * 27.65662 * 22 21 20 25 25 N 1.31626 * 119.99938 * 17.37189 * 24 22 21 26 26 Si 1.86798 * 120.00303 * 197.36832 * 24 22 21 27 27 H 1.48497 * 109.46947 * 59.99906 * 26 24 22 28 28 H 1.48495 * 109.47426 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47256 * 300.00260 * 26 24 22 30 30 C 1.46933 * 118.73955 * 306.38711 * 21 20 19 31 31 C 1.53040 * 109.46112 * 299.99999 * 18 2 1 32 32 H 1.08994 * 109.47243 * 60.00349 * 1 2 3 33 33 H 1.08997 * 109.46675 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46809 * 300.00237 * 1 2 3 35 35 H 0.96998 * 119.99767 * 264.99552 * 4 2 1 36 36 H 1.09010 * 109.43175 * 311.88511 * 9 7 5 37 37 H 1.08999 * 109.43302 * 71.73074 * 9 7 5 38 38 H 1.08998 * 109.72783 * 189.78812 * 10 9 7 39 39 H 1.09002 * 109.74016 * 69.16175 * 10 9 7 40 40 H 1.07997 * 126.19325 * 359.68268 * 12 11 10 41 41 H 1.09002 * 109.71963 * 76.98381 * 17 16 15 42 42 H 1.08999 * 109.72227 * 316.33333 * 17 16 15 43 43 H 1.09003 * 109.45669 * 180.02562 * 18 2 1 44 44 H 1.09001 * 109.49423 * 298.56492 * 19 18 2 45 45 H 1.08999 * 109.49517 * 58.66307 * 19 18 2 46 46 H 1.08994 * 109.58516 * 294.85015 * 20 19 18 47 47 H 1.08997 * 109.58461 * 174.42227 * 20 19 18 48 48 H 0.97002 * 119.99802 * 179.97438 * 25 24 22 49 49 H 1.09002 * 109.58430 * 293.82462 * 30 21 20 50 50 H 1.09001 * 109.58296 * 173.39678 * 30 21 20 51 51 H 1.08997 * 109.50001 * 301.33550 * 31 18 2 52 52 H 1.09000 * 109.49698 * 61.44015 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6499 -0.7287 -3.5874 8 1 1.9782 -1.5521 -3.8306 9 6 2.6941 0.2537 -4.7599 10 6 2.9174 -0.5130 -6.0695 11 6 4.1000 -1.4311 -5.8822 12 6 4.8345 -2.0488 -6.8255 13 7 5.7932 -2.7635 -6.1947 14 1 6.4704 -3.3109 -6.6222 15 7 5.6362 -2.5747 -4.8133 16 6 4.6233 -1.7795 -4.6260 17 6 4.0560 -1.2796 -3.3195 18 6 2.0401 -0.7212 1.2493 19 6 1.5312 -2.1645 1.2482 20 6 2.0721 -2.8934 2.4824 21 7 1.7087 -2.1262 3.6816 22 6 1.0456 -2.7258 4.7190 23 1 0.4036 -2.1399 5.3600 24 6 1.1986 -4.0865 4.9465 25 7 2.2123 -4.7334 4.4112 26 14 -0.0340 -4.9997 6.0124 27 1 -1.3874 -4.8863 5.4119 28 1 0.3513 -6.4311 6.0992 29 1 -0.0455 -4.4073 7.3742 30 6 2.0707 -0.7037 3.7469 31 6 1.5298 0.0006 2.4986 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 2.2490 -1.6318 -1.1525 36 1 1.7504 0.7966 -4.8139 37 1 3.5101 0.9606 -4.6101 38 1 3.1217 0.1899 -6.8771 39 1 2.0304 -1.0998 -6.3084 40 1 4.6848 -1.9855 -7.8932 41 1 4.6912 -0.4882 -2.9215 42 1 3.9992 -2.1007 -2.6050 43 1 3.1301 -0.7206 1.2493 44 1 0.4415 -2.1661 1.2733 45 1 1.8756 -2.6710 0.3466 46 1 3.1571 -2.9721 2.4139 47 1 1.6342 -3.8899 2.5394 48 1 2.3194 -5.6842 4.5706 49 1 3.1556 -0.6040 3.7816 50 1 1.6318 -0.2556 4.6384 51 1 1.8732 1.0350 2.4870 52 1 0.4401 -0.0215 2.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997871927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:39 Heat of formation + Delta-G solvation = 16.483628 kcal Electronic energy + Delta-G solvation = -30995.462798 eV Core-core repulsion = 26995.049464 eV Total energy + Delta-G solvation = -4000.413334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.42380 -41.14302 -39.58106 -37.26024 -36.60327 -34.51769 -33.24858 -32.62395 -31.62230 -31.48591 -30.11780 -29.36317 -27.13585 -26.16164 -24.86380 -23.95653 -23.31544 -22.03387 -21.87379 -21.11020 -20.14214 -19.80647 -18.61334 -18.50521 -18.01094 -16.99388 -16.78927 -16.38848 -15.93057 -15.71699 -15.64815 -15.41690 -15.15115 -14.92766 -14.74628 -14.65522 -14.44557 -14.07879 -14.03921 -13.80184 -13.72111 -13.46873 -13.12896 -12.92337 -12.85174 -12.83777 -12.51787 -12.43979 -12.32908 -12.16253 -12.11171 -11.92920 -11.82431 -11.67364 -11.50047 -11.20859 -11.16610 -10.95172 -10.67772 -10.48832 -10.36681 -10.00328 -9.30918 -8.64297 -7.84739 -5.28971 1.01043 1.47851 1.49689 1.56535 1.64585 1.79246 2.03786 2.27637 2.53272 3.29171 3.42287 3.69989 3.73223 3.82807 3.89336 3.94855 3.98982 4.09367 4.14210 4.38692 4.42493 4.44274 4.48622 4.49911 4.61386 4.64357 4.67959 4.70285 4.75456 4.83222 4.87769 4.98028 5.00097 5.01919 5.05654 5.11443 5.21619 5.27001 5.28621 5.30246 5.31627 5.37395 5.42110 5.46883 5.57727 5.63003 5.70768 5.73344 5.85034 6.42164 6.52367 6.62038 6.75285 7.18532 7.30175 7.90961 8.41826 9.21062 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.002346 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.129877 B =11930.414888 C =13151.894846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.077 0.923 4 N -0.716 5.716 5 C 0.520 3.480 6 O -0.576 6.576 7 C -0.092 4.092 8 H 0.117 0.883 9 C -0.095 4.095 10 C -0.032 4.032 11 C -0.257 4.257 12 C 0.075 3.925 13 N -0.480 5.480 14 H 0.451 0.549 15 N -0.330 5.330 16 C 0.070 3.930 17 C -0.028 4.028 18 C -0.075 4.075 19 C -0.120 4.120 20 C 0.176 3.824 21 N -0.610 5.610 22 C -0.260 4.260 23 H 0.065 0.935 24 C -0.052 4.052 25 N -0.935 5.935 26 Si 0.964 3.036 27 H -0.278 1.278 28 H -0.295 1.295 29 H -0.277 1.277 30 C 0.140 3.860 31 C -0.116 4.116 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.218 0.782 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.068 0.932 46 H -0.008 1.008 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.010 0.990 50 H 0.052 0.948 51 H 0.077 0.923 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 7.402 -26.075 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.095 0.905 4 N -0.367 5.367 5 C 0.308 3.692 6 O -0.455 6.455 7 C -0.113 4.113 8 H 0.135 0.865 9 C -0.133 4.133 10 C -0.070 4.070 11 C -0.269 4.269 12 C -0.071 4.071 13 N -0.190 5.190 14 H 0.297 0.703 15 N -0.153 5.153 16 C -0.098 4.098 17 C -0.067 4.067 18 C -0.095 4.095 19 C -0.159 4.159 20 C 0.051 3.949 21 N -0.334 5.334 22 C -0.391 4.391 23 H 0.082 0.918 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.793 3.207 27 H -0.204 1.204 28 H -0.221 1.221 29 H -0.203 1.203 30 C 0.015 3.985 31 C -0.155 4.155 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.234 0.766 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.010 0.990 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.894 7.394 -25.516 26.723 hybrid contribution -0.253 -1.152 0.507 1.284 sum 2.640 6.242 -25.009 25.911 Atomic orbital electron populations 1.22165 0.94975 1.02339 1.01972 1.20847 0.94359 0.96229 0.83405 0.90530 1.46229 1.66442 1.14675 1.09395 1.20903 0.76585 0.86798 0.84937 1.90669 1.51924 1.17462 1.85466 1.21301 0.97143 1.00016 0.92868 0.86511 1.21345 1.02721 0.96572 0.92669 1.20004 0.94182 0.95869 0.96924 1.20436 1.05355 1.09670 0.91417 1.22720 0.89900 0.93867 1.00629 1.46411 1.28128 1.40818 1.03629 0.70274 1.76981 1.21173 1.22324 0.94837 1.22339 0.94185 0.96244 0.97042 1.19979 0.93977 1.00746 0.92029 1.21177 0.99716 0.95014 0.93545 1.22070 1.00619 0.95333 0.97906 1.20591 0.94733 0.94984 0.84608 1.44326 1.66901 1.06217 1.15931 1.19473 1.19108 0.92421 1.08059 0.91752 1.25752 0.98756 0.99064 1.01103 1.70186 1.29550 1.08682 1.49690 0.85389 0.79221 0.77166 0.78969 1.20406 1.22134 1.20294 1.21055 0.96000 0.84628 0.96860 1.21936 1.00983 0.98591 0.93972 0.93085 0.92131 0.91089 0.75480 0.90776 0.92535 0.89200 0.89892 0.76574 0.90070 0.89001 0.91784 0.92282 0.91320 0.98958 0.92956 0.94209 0.97224 0.92952 0.90420 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 8.78 71.98 0.63 -3.31 16 2 C 0.16 4.03 2.40 44.99 0.11 4.14 16 3 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16 4 N -0.72 -16.27 4.90 -442.53 -2.17 -18.44 16 5 C 0.52 12.27 7.10 87.66 0.62 12.89 16 6 O -0.58 -17.58 15.43 -3.04 -0.05 -17.63 16 7 C -0.09 -1.63 2.47 -11.40 -0.03 -1.66 16 8 H 0.12 1.74 8.10 -2.39 -0.02 1.72 16 9 C -0.10 -1.59 4.65 30.73 0.14 -1.45 16 10 C -0.03 -0.38 6.28 30.03 0.19 -0.19 16 11 C -0.26 -3.97 5.89 -20.10 -0.12 -4.09 16 12 C 0.08 0.82 11.95 83.33 1.00 1.81 16 13 N -0.48 -6.78 7.37 -57.88 -0.43 -7.21 16 14 H 0.45 3.45 8.96 -213.18 -1.91 1.54 16 15 N -0.33 -7.42 12.68 -47.14 -0.60 -8.02 16 16 C 0.07 1.42 7.10 43.44 0.31 1.73 16 17 C -0.03 -0.53 5.43 30.05 0.16 -0.37 16 18 C -0.08 -2.25 2.14 -10.77 -0.02 -2.27 16 19 C -0.12 -4.10 4.82 30.68 0.15 -3.95 16 20 C 0.18 8.26 5.31 86.36 0.46 8.71 16 21 N -0.61 -30.27 3.00 -699.08 -2.09 -32.37 16 22 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 23 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 24 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 25 N -0.93 -55.28 11.19 21.65 0.24 -55.03 16 26 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 30 C 0.14 5.72 6.52 86.36 0.56 6.28 16 31 C -0.12 -3.66 4.96 30.67 0.15 -3.51 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.54 6.46 -2.39 -0.02 1.53 16 34 H 0.07 1.76 6.46 -2.39 -0.02 1.74 16 35 H 0.41 8.17 6.49 -92.71 -0.60 7.57 16 36 H 0.07 1.33 7.69 -2.38 -0.02 1.31 16 37 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 42 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.07 6.51 -2.39 -0.02 2.05 16 45 H 0.07 1.97 6.46 -2.39 -0.02 1.95 16 46 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 48 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 51 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.06 2.09 6.51 -2.39 -0.02 2.08 16 Total: -1.00 -73.60 396.28 0.90 -72.70 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -1.57 Total: 20.24 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.54 Total: -1.16 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.04 Total: -121.07 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.60 0.90 -72.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997871927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.180 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds