Wall clock time and date at job start Wed Apr 1 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 N 1.46504 * 109.46871 * 239.99933 * 2 1 3 5 5 C 1.34782 * 119.99674 * 85.00206 * 4 2 1 6 6 O 1.21559 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.47841 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.39529 * 119.63299 * 180.02562 * 7 5 4 9 9 C 1.38227 * 119.15619 * 180.02562 * 8 7 5 10 10 C 1.39448 * 118.42787 * 0.02562 * 9 8 7 11 11 N 1.39072 * 120.40221 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.46490 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.39468 * 119.19791 * 0.24590 * 10 9 8 15 15 N 1.31321 * 120.77122 * 359.49951 * 14 10 9 16 16 C 1.52995 * 109.47005 * 120.00714 * 2 1 3 17 17 C 1.53039 * 109.46386 * 60.02300 * 16 2 1 18 18 C 1.53198 * 109.31468 * 178.60301 * 17 16 2 19 19 N 1.46931 * 108.76485 * 54.65412 * 18 17 16 20 20 C 1.36929 * 120.62750 * 126.40495 * 19 18 17 21 21 H 1.07996 * 120.00801 * 332.60980 * 20 19 18 22 22 C 1.38819 * 119.99570 * 152.60800 * 20 19 18 23 23 N 1.31625 * 119.99620 * 159.34502 * 22 20 19 24 24 Si 1.86793 * 120.00307 * 339.34648 * 22 20 19 25 25 H 1.48504 * 109.47212 * 92.93782 * 24 22 20 26 26 H 1.48501 * 109.47387 * 212.94434 * 24 22 20 27 27 H 1.48503 * 109.46934 * 332.94152 * 24 22 20 28 28 C 1.46925 * 118.73761 * 306.38622 * 19 18 17 29 29 C 1.53045 * 109.45634 * 299.96791 * 16 2 1 30 30 H 1.09003 * 109.46591 * 59.99430 * 1 2 3 31 31 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46808 * 300.00097 * 1 2 3 33 33 H 0.96993 * 120.00557 * 265.00393 * 4 2 1 34 34 H 1.08003 * 120.42532 * 0.02562 * 8 7 5 35 35 H 1.07996 * 120.78784 * 179.97438 * 9 8 7 36 36 H 1.09009 * 109.47095 * 270.00285 * 12 11 10 37 37 H 1.08998 * 109.47580 * 150.00405 * 12 11 10 38 38 H 1.09006 * 109.47106 * 29.99821 * 12 11 10 39 39 H 1.08995 * 109.47672 * 270.00042 * 13 11 10 40 40 H 1.09000 * 109.47175 * 29.99862 * 13 11 10 41 41 H 1.09001 * 109.47528 * 149.99650 * 13 11 10 42 42 H 1.07996 * 119.61260 * 179.72813 * 14 10 9 43 43 H 1.09001 * 109.46195 * 179.97438 * 16 2 1 44 44 H 1.09003 * 109.49858 * 298.56885 * 17 16 2 45 45 H 1.09001 * 109.49707 * 58.66624 * 17 16 2 46 46 H 1.08997 * 109.59376 * 294.87043 * 18 17 16 47 47 H 1.08994 * 109.70290 * 174.50315 * 18 17 16 48 48 H 0.96997 * 119.99888 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.58889 * 293.82261 * 28 19 18 50 50 H 1.08998 * 109.70077 * 173.46432 * 28 19 18 51 51 H 1.09000 * 109.49993 * 301.33647 * 29 16 2 52 52 H 1.08997 * 109.49926 * 61.43631 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1614 -2.4116 7 6 2.6403 -0.7150 -3.5642 8 6 2.7711 -0.0114 -4.7620 9 6 3.2327 -0.6727 -5.8846 10 6 3.5507 -2.0259 -5.7740 11 7 4.0182 -2.7315 -6.8775 12 6 4.1786 -2.0534 -8.1662 13 6 4.3501 -4.1527 -6.7513 14 6 3.3890 -2.6646 -4.5447 15 7 2.9524 -2.0044 -3.4969 16 6 2.0400 -0.7214 1.2491 17 6 1.5302 -2.1644 1.2485 18 6 2.0713 -2.8935 2.4824 19 7 1.7085 -2.1261 3.6817 20 6 1.0454 -2.7253 4.7191 21 1 0.4076 -3.5766 4.5326 22 6 1.1930 -2.2384 6.0107 23 7 0.2886 -2.5159 6.9259 24 14 2.6749 -1.1895 6.4499 25 1 2.3331 0.2457 6.2808 26 1 3.0605 -1.4436 7.8613 27 1 3.8093 -1.5367 5.5566 28 6 2.0712 -0.7038 3.7469 29 6 1.5303 0.0007 2.4986 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1528 34 1 2.5150 1.0367 -4.8114 35 1 3.3437 -0.1539 -6.8252 36 1 3.2529 -2.1330 -8.7364 37 1 4.9901 -2.5206 -8.7241 38 1 4.4119 -1.0021 -7.9971 39 1 5.3978 -4.2576 -6.4695 40 1 3.7209 -4.6062 -5.9856 41 1 4.1787 -4.6520 -7.7050 42 1 3.6290 -3.7135 -4.4527 43 1 3.1300 -0.7217 1.2488 44 1 0.4405 -2.1653 1.2739 45 1 1.8740 -2.6713 0.3468 46 1 3.1562 -2.9727 2.4137 47 1 1.6350 -3.8906 2.5408 48 1 0.3915 -2.1754 7.8283 49 1 3.1561 -0.6045 3.7812 50 1 1.6346 -0.2538 4.6384 51 1 1.8742 1.0349 2.4868 52 1 0.4406 -0.0208 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997878074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:28 Heat of formation + Delta-G solvation = 34.923919 kcal Electronic energy + Delta-G solvation = -30484.756905 eV Core-core repulsion = 26485.143202 eV Total energy + Delta-G solvation = -3999.613703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.91727 -39.62682 -38.19464 -37.11896 -35.41472 -33.01362 -32.49934 -31.50571 -30.73203 -30.24901 -29.02838 -28.95589 -26.22089 -25.36024 -23.68181 -23.40571 -22.97816 -22.12654 -20.87897 -20.33228 -18.84862 -18.34116 -17.51075 -16.99707 -16.62345 -15.84281 -15.79862 -15.47075 -15.03514 -14.97906 -14.69195 -14.49300 -14.27427 -13.96902 -13.79985 -13.63495 -13.44246 -13.25784 -13.21066 -12.96382 -12.88172 -12.66387 -12.46675 -12.27974 -12.12482 -11.80633 -11.67294 -11.59850 -10.97699 -10.85473 -10.62953 -10.51496 -10.34629 -10.26644 -10.04116 -9.93071 -9.77819 -9.67419 -9.51191 -9.35726 -8.93024 -8.55209 -7.92041 -6.90516 -5.89689 -3.24453 0.61594 0.97058 2.44110 2.73439 3.22878 3.36858 3.52774 3.56266 3.76372 4.05729 4.27909 4.35188 4.48219 4.58324 4.66417 4.71786 4.77385 4.94515 4.98621 5.00622 5.06997 5.09732 5.12772 5.14694 5.30082 5.38000 5.47808 5.52858 5.63209 5.66985 5.74991 5.85887 5.96111 6.02559 6.05587 6.12996 6.19848 6.24111 6.34612 6.46201 6.48652 6.56121 6.58334 6.64398 6.72351 6.73320 6.75915 6.79743 7.08049 7.46702 7.76444 8.02732 8.30349 8.38417 9.00683 9.78290 10.17201 11.26448 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002103 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.642255 B =13308.563442 C =14061.421693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.575 3.425 6 O -0.547 6.547 7 C 0.012 3.988 8 C -0.056 4.056 9 C -0.172 4.172 10 C 0.186 3.814 11 N -0.624 5.624 12 C 0.088 3.912 13 C 0.086 3.914 14 C 0.028 3.972 15 N -0.414 5.414 16 C -0.086 4.086 17 C -0.131 4.131 18 C 0.149 3.851 19 N -0.606 5.606 20 C -0.256 4.256 21 H 0.085 0.915 22 C 0.021 3.979 23 N -0.910 5.910 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.271 1.271 28 C 0.126 3.874 29 C -0.127 4.127 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.020 0.980 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.023 0.977 50 H 0.072 0.928 51 H 0.055 0.945 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 0.363 -32.257 33.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.103 0.897 4 N -0.355 5.355 5 C 0.361 3.639 6 O -0.424 6.424 7 C -0.127 4.127 8 C -0.078 4.078 9 C -0.202 4.202 10 C 0.079 3.921 11 N -0.333 5.333 12 C -0.055 4.055 13 C -0.056 4.056 14 C -0.139 4.139 15 N -0.124 5.124 16 C -0.105 4.105 17 C -0.170 4.170 18 C 0.023 3.977 19 N -0.329 5.329 20 C -0.385 4.385 21 H 0.102 0.898 22 C -0.177 4.177 23 N -0.553 5.553 24 Si 0.714 3.286 25 H -0.216 1.216 26 H -0.233 1.233 27 H -0.196 1.196 28 C 0.001 3.999 29 C -0.167 4.167 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.246 0.754 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.177 0.823 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.041 0.959 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.891 0.673 -31.433 32.416 hybrid contribution 1.094 0.510 -0.559 1.330 sum 8.985 1.183 -31.992 33.251 Atomic orbital electron populations 1.22239 0.95164 1.02557 1.02162 1.21115 0.94409 0.96914 0.83468 0.89747 1.46052 1.65544 1.14836 1.09066 1.17758 0.77540 0.85937 0.82664 1.90763 1.51491 1.15287 1.84894 1.20847 1.06549 0.90673 0.94660 1.21865 0.93425 1.01360 0.91108 1.21078 1.06229 0.92775 1.00101 1.19119 0.92253 0.92037 0.88662 1.46263 1.69477 1.09682 1.07915 1.21751 1.01489 0.98250 0.84041 1.21780 1.00813 0.80008 1.03034 1.22384 1.04237 1.00344 0.86914 1.67357 1.06368 1.07938 1.30716 1.21309 1.00111 0.95931 0.93157 1.22121 1.01630 0.94777 0.98519 1.20905 0.96352 0.94629 0.85796 1.44345 1.67437 1.04106 1.17047 1.18924 1.19962 1.14651 0.84937 0.89777 1.25284 0.97958 0.98852 0.95650 1.69843 1.33462 1.48167 1.03840 0.86943 0.85572 0.79593 0.76502 1.21647 1.23295 1.19650 1.21317 0.96725 0.85398 0.96476 1.22087 1.01758 0.97862 0.94984 0.92848 0.91952 0.91024 0.75360 0.83557 0.84314 0.92792 0.91006 0.91022 0.92620 0.90734 0.90965 0.82301 0.91276 0.91249 0.93009 0.96173 0.91955 0.92866 0.95914 0.90962 0.92682 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.78 37.16 0.33 -1.99 16 2 C 0.14 2.10 2.40 -67.93 -0.16 1.94 16 3 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 4 N -0.70 -9.71 4.99 -54.75 -0.27 -9.99 16 5 C 0.58 8.43 7.76 -12.33 -0.10 8.33 16 6 O -0.55 -9.32 15.97 5.31 0.08 -9.24 16 7 C 0.01 0.15 6.74 -83.02 -0.56 -0.41 16 8 C -0.06 -0.59 9.62 -39.10 -0.38 -0.96 16 9 C -0.17 -1.39 9.28 -39.14 -0.36 -1.76 16 10 C 0.19 1.48 6.57 -83.67 -0.55 0.93 16 11 N -0.62 -3.42 3.39 -187.40 -0.64 -4.05 16 12 C 0.09 0.28 10.20 59.85 0.61 0.89 16 13 C 0.09 0.29 10.20 59.84 0.61 0.90 16 14 C 0.03 0.25 10.38 -17.31 -0.18 0.07 16 15 N -0.41 -4.81 9.52 -9.63 -0.09 -4.91 16 16 C -0.09 -1.35 2.14 -90.58 -0.19 -1.54 16 17 C -0.13 -2.11 4.81 -26.61 -0.13 -2.23 16 18 C 0.15 2.92 6.52 -3.70 -0.02 2.90 16 19 N -0.61 -14.42 2.77 -172.31 -0.48 -14.90 16 20 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 21 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 22 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 23 N -0.91 -28.17 13.97 55.49 0.78 -27.39 16 24 Si 0.88 22.77 24.35 -169.99 -4.14 18.63 16 25 H -0.29 -7.19 6.62 56.52 0.37 -6.81 16 26 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 27 H -0.27 -6.90 6.64 56.52 0.38 -6.52 16 28 C 0.13 2.78 4.20 -3.71 -0.02 2.77 16 29 C -0.13 -2.26 4.97 -26.60 -0.13 -2.39 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.88 6.46 -51.93 -0.34 0.54 16 32 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 33 H 0.41 5.30 6.16 -40.82 -0.25 5.05 16 34 H 0.15 1.45 7.63 -52.48 -0.40 1.05 16 35 H 0.14 0.76 6.25 -52.49 -0.33 0.44 16 36 H 0.05 0.15 8.14 -51.92 -0.42 -0.27 16 37 H 0.07 0.13 8.07 -51.93 -0.42 -0.29 16 38 H 0.07 0.21 6.22 -51.93 -0.32 -0.11 16 39 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.07 0.24 6.19 -51.93 -0.32 -0.09 16 41 H 0.07 0.14 8.07 -51.93 -0.42 -0.28 16 42 H 0.16 1.06 6.14 -52.49 -0.32 0.74 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.17 6.51 -51.93 -0.34 0.84 16 45 H 0.05 0.71 6.46 -51.93 -0.34 0.37 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 50 H 0.07 1.75 4.50 -51.93 -0.23 1.52 16 51 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.07 1.31 6.51 -51.93 -0.34 0.97 16 LS Contribution 394.59 15.07 5.95 5.95 Total: -1.00 -34.24 394.59 -8.31 -42.55 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.02 Total: 2.74 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.48 Total: 0.62 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.70 Total: -61.24 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.24 -8.31 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997878074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.473 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds