Wall clock time and date at job start Wed Apr 1 2020 05:21:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.47093 * 2 1
4 4 N 1.46504 * 109.46871 * 239.99933 * 2 1 3
5 5 C 1.34782 * 119.99674 * 85.00206 * 4 2 1
6 6 O 1.21559 * 119.99837 * 0.02562 * 5 4 2
7 7 C 1.47841 * 119.99827 * 179.97438 * 5 4 2
8 8 C 1.39529 * 119.63299 * 180.02562 * 7 5 4
9 9 C 1.38227 * 119.15619 * 180.02562 * 8 7 5
10 10 C 1.39448 * 118.42787 * 0.02562 * 9 8 7
11 11 N 1.39072 * 120.40221 * 179.97438 * 10 9 8
12 12 C 1.46501 * 119.99919 * 359.97438 * 11 10 9
13 13 C 1.46490 * 120.00206 * 179.97438 * 11 10 9
14 14 C 1.39468 * 119.19791 * 0.24590 * 10 9 8
15 15 N 1.31321 * 120.77122 * 359.49951 * 14 10 9
16 16 C 1.52995 * 109.47005 * 120.00714 * 2 1 3
17 17 C 1.53039 * 109.46386 * 60.02300 * 16 2 1
18 18 C 1.53198 * 109.31468 * 178.60301 * 17 16 2
19 19 N 1.46931 * 108.76485 * 54.65412 * 18 17 16
20 20 C 1.36929 * 120.62750 * 126.40495 * 19 18 17
21 21 H 1.07996 * 120.00801 * 332.60980 * 20 19 18
22 22 C 1.38819 * 119.99570 * 152.60800 * 20 19 18
23 23 N 1.31625 * 119.99620 * 159.34502 * 22 20 19
24 24 Si 1.86793 * 120.00307 * 339.34648 * 22 20 19
25 25 H 1.48504 * 109.47212 * 92.93782 * 24 22 20
26 26 H 1.48501 * 109.47387 * 212.94434 * 24 22 20
27 27 H 1.48503 * 109.46934 * 332.94152 * 24 22 20
28 28 C 1.46925 * 118.73761 * 306.38622 * 19 18 17
29 29 C 1.53045 * 109.45634 * 299.96791 * 16 2 1
30 30 H 1.09003 * 109.46591 * 59.99430 * 1 2 3
31 31 H 1.09000 * 109.47465 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46808 * 300.00097 * 1 2 3
33 33 H 0.96993 * 120.00557 * 265.00393 * 4 2 1
34 34 H 1.08003 * 120.42532 * 0.02562 * 8 7 5
35 35 H 1.07996 * 120.78784 * 179.97438 * 9 8 7
36 36 H 1.09009 * 109.47095 * 270.00285 * 12 11 10
37 37 H 1.08998 * 109.47580 * 150.00405 * 12 11 10
38 38 H 1.09006 * 109.47106 * 29.99821 * 12 11 10
39 39 H 1.08995 * 109.47672 * 270.00042 * 13 11 10
40 40 H 1.09000 * 109.47175 * 29.99862 * 13 11 10
41 41 H 1.09001 * 109.47528 * 149.99650 * 13 11 10
42 42 H 1.07996 * 119.61260 * 179.72813 * 14 10 9
43 43 H 1.09001 * 109.46195 * 179.97438 * 16 2 1
44 44 H 1.09003 * 109.49858 * 298.56885 * 17 16 2
45 45 H 1.09001 * 109.49707 * 58.66624 * 17 16 2
46 46 H 1.08997 * 109.59376 * 294.87043 * 18 17 16
47 47 H 1.08994 * 109.70290 * 174.50315 * 18 17 16
48 48 H 0.96997 * 119.99888 * 180.02562 * 23 22 20
49 49 H 1.09003 * 109.58889 * 293.82261 * 28 19 18
50 50 H 1.08998 * 109.70077 * 173.46432 * 28 19 18
51 51 H 1.09000 * 109.49993 * 301.33647 * 29 16 2
52 52 H 1.08997 * 109.49926 * 61.43631 * 29 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1962
5 6 2.1470 -0.0182 -2.3572
6 8 1.8584 1.1614 -2.4116
7 6 2.6403 -0.7150 -3.5642
8 6 2.7711 -0.0114 -4.7620
9 6 3.2327 -0.6727 -5.8846
10 6 3.5507 -2.0259 -5.7740
11 7 4.0182 -2.7315 -6.8775
12 6 4.1786 -2.0534 -8.1662
13 6 4.3501 -4.1527 -6.7513
14 6 3.3890 -2.6646 -4.5447
15 7 2.9524 -2.0044 -3.4969
16 6 2.0400 -0.7214 1.2491
17 6 1.5302 -2.1644 1.2485
18 6 2.0713 -2.8935 2.4824
19 7 1.7085 -2.1261 3.6817
20 6 1.0454 -2.7253 4.7191
21 1 0.4076 -3.5766 4.5326
22 6 1.1930 -2.2384 6.0107
23 7 0.2886 -2.5159 6.9259
24 14 2.6749 -1.1895 6.4499
25 1 2.3331 0.2457 6.2808
26 1 3.0605 -1.4436 7.8613
27 1 3.8093 -1.5367 5.5566
28 6 2.0712 -0.7038 3.7469
29 6 1.5303 0.0007 2.4986
30 1 -0.3632 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.2490 -1.6318 -1.1528
34 1 2.5150 1.0367 -4.8114
35 1 3.3437 -0.1539 -6.8252
36 1 3.2529 -2.1330 -8.7364
37 1 4.9901 -2.5206 -8.7241
38 1 4.4119 -1.0021 -7.9971
39 1 5.3978 -4.2576 -6.4695
40 1 3.7209 -4.6062 -5.9856
41 1 4.1787 -4.6520 -7.7050
42 1 3.6290 -3.7135 -4.4527
43 1 3.1300 -0.7217 1.2488
44 1 0.4405 -2.1653 1.2739
45 1 1.8740 -2.6713 0.3468
46 1 3.1562 -2.9727 2.4137
47 1 1.6350 -3.8906 2.5408
48 1 0.3915 -2.1754 7.8283
49 1 3.1561 -0.6045 3.7812
50 1 1.6346 -0.2538 4.6384
51 1 1.8742 1.0349 2.4868
52 1 0.4406 -0.0208 2.5121
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997878074.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:21:26
Heat of formation + Delta-G solvation = 11.663286 kcal
Electronic energy + Delta-G solvation = -30485.765562 eV
Core-core repulsion = 26485.143202 eV
Total energy + Delta-G solvation = -4000.622360 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-41.70736 -40.68452 -39.51666 -37.72283 -36.89641 -34.52236 -33.42501 -33.00370
-31.88216 -31.59424 -30.29156 -29.30573 -27.17345 -26.72185 -24.92727 -24.42492
-24.22064 -23.16138 -22.25225 -21.40294 -20.23460 -19.28101 -18.60948 -18.14416
-17.73310 -17.19328 -16.68914 -16.34565 -16.07817 -16.03946 -15.88478 -15.55372
-15.32315 -15.22366 -15.09431 -14.90580 -14.48389 -14.44553 -14.26542 -13.98470
-13.75742 -13.61844 -13.53309 -13.38771 -13.22626 -13.01108 -12.93950 -12.61188
-12.55024 -12.32850 -12.15220 -12.00055 -11.72113 -11.51035 -11.43677 -11.29877
-11.12913 -11.03880 -10.66907 -10.62689 -10.50863 -10.05972 -8.89155 -8.43906
-8.14012 -5.44411 -0.14994 0.30858 1.31363 1.42104 1.51353 1.80260
2.02166 2.20891 2.43718 2.95449 3.08709 3.29644 3.39348 3.72185
3.75434 3.78132 3.85024 3.96284 4.05309 4.12533 4.28094 4.31866
4.38148 4.45119 4.47358 4.51487 4.56233 4.57695 4.71512 4.73692
4.76985 4.79496 4.86449 4.90019 4.91899 4.96084 4.99057 5.03656
5.09211 5.13255 5.18228 5.20997 5.28687 5.32546 5.41156 5.55380
5.65648 5.90489 6.08513 6.15748 6.20490 6.51651 6.90858 6.95675
7.25488 7.66544 8.07668 9.05962
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.020772 B = 0.002103 C = 0.001991
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.642255 B =13308.563442 C =14061.421693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.155 3.845
3 H 0.078 0.922
4 N -0.699 5.699
5 C 0.574 3.426
6 O -0.580 6.580
7 C -0.023 4.023
8 C -0.059 4.059
9 C -0.174 4.174
10 C 0.195 3.805
11 N -0.619 5.619
12 C 0.079 3.921
13 C 0.077 3.923
14 C 0.019 3.981
15 N -0.428 5.428
16 C -0.076 4.076
17 C -0.119 4.119
18 C 0.143 3.857
19 N -0.619 5.619
20 C -0.243 4.243
21 H 0.052 0.948
22 C -0.038 4.038
23 N -0.958 5.958
24 Si 0.946 3.054
25 H -0.276 1.276
26 H -0.312 1.312
27 H -0.263 1.263
28 C 0.121 3.879
29 C -0.120 4.120
30 H 0.048 0.952
31 H 0.062 0.938
32 H 0.071 0.929
33 H 0.414 0.586
34 H 0.144 0.856
35 H 0.165 0.835
36 H 0.061 0.939
37 H 0.090 0.910
38 H 0.075 0.925
39 H 0.062 0.938
40 H 0.076 0.924
41 H 0.091 0.909
42 H 0.181 0.819
43 H 0.075 0.925
44 H 0.060 0.940
45 H 0.081 0.919
46 H 0.033 0.967
47 H 0.055 0.945
48 H 0.260 0.740
49 H 0.031 0.969
50 H 0.048 0.952
51 H 0.077 0.923
52 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.247 0.287 -35.793 37.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.050 3.950
3 H 0.096 0.904
4 N -0.350 5.350
5 C 0.361 3.639
6 O -0.460 6.460
7 C -0.161 4.161
8 C -0.081 4.081
9 C -0.204 4.204
10 C 0.085 3.915
11 N -0.325 5.325
12 C -0.063 4.063
13 C -0.064 4.064
14 C -0.149 4.149
15 N -0.138 5.138
16 C -0.095 4.095
17 C -0.158 4.158
18 C 0.019 3.981
19 N -0.344 5.344
20 C -0.373 4.373
21 H 0.070 0.930
22 C -0.232 4.232
23 N -0.604 5.604
24 Si 0.776 3.224
25 H -0.202 1.202
26 H -0.242 1.242
27 H -0.187 1.187
28 C -0.004 4.004
29 C -0.160 4.160
30 H 0.067 0.933
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.252 0.748
34 H 0.162 0.838
35 H 0.183 0.817
36 H 0.080 0.920
37 H 0.109 0.891
38 H 0.094 0.906
39 H 0.081 0.919
40 H 0.095 0.905
41 H 0.109 0.891
42 H 0.198 0.802
43 H 0.094 0.906
44 H 0.079 0.921
45 H 0.099 0.901
46 H 0.051 0.949
47 H 0.074 0.926
48 H 0.069 0.931
49 H 0.048 0.952
50 H 0.066 0.934
51 H 0.096 0.904
52 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 9.978 0.584 -35.046 36.444
hybrid contribution 0.486 0.362 0.297 0.675
sum 10.464 0.946 -34.749 36.303
Atomic orbital electron populations
1.22184 0.95036 1.02487 1.01897 1.20900 0.94357 0.96433 0.83285
0.90409 1.45956 1.65448 1.14923 1.08719 1.18119 0.76827 0.85644
0.83313 1.90729 1.53105 1.16676 1.85501 1.20570 1.09687 0.91460
0.94413 1.21912 0.93557 1.01340 0.91310 1.21303 1.05703 0.93003
1.00346 1.19219 0.91001 0.92112 0.89120 1.46612 1.67556 1.10516
1.07857 1.21981 1.02655 0.98602 0.83097 1.21998 1.01280 0.78844
1.04321 1.22779 1.03984 1.01222 0.86924 1.67262 1.06920 1.07646
1.32009 1.21190 1.00343 0.95320 0.92660 1.21982 1.00970 0.94971
0.97894 1.21099 0.97157 0.94431 0.85437 1.44485 1.67433 1.05343
1.17127 1.18875 1.18846 1.13333 0.86253 0.92995 1.25897 1.00341
1.01241 0.95732 1.69971 1.35388 1.50839 1.04240 0.85913 0.82183
0.78753 0.75586 1.20235 1.24158 1.18722 1.21370 0.97012 0.84489
0.97556 1.21978 1.01235 0.98894 0.93877 0.93313 0.91892 0.91066
0.74811 0.83844 0.81745 0.91998 0.89143 0.90615 0.91902 0.90516
0.89064 0.80212 0.90634 0.92119 0.90063 0.94866 0.92611 0.93086
0.95150 0.93381 0.90400 0.91744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.35 8.78 71.98 0.63 -3.72 16
2 C 0.15 4.28 2.40 44.99 0.11 4.38 16
3 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16
4 N -0.70 -18.52 4.99 -445.39 -2.22 -20.74 16
5 C 0.57 16.63 7.76 86.78 0.67 17.30 16
6 O -0.58 -19.90 15.97 -3.90 -0.06 -19.97 16
7 C -0.02 -0.57 6.74 41.85 0.28 -0.29 16
8 C -0.06 -1.20 9.62 22.58 0.22 -0.98 16
9 C -0.17 -2.46 9.28 22.56 0.21 -2.25 16
10 C 0.20 2.61 6.57 38.58 0.25 2.86 16
11 N -0.62 -4.68 3.39 -746.79 -2.53 -7.22 16
12 C 0.08 0.23 10.20 127.77 1.30 1.53 16
13 C 0.08 0.26 10.20 127.77 1.30 1.56 16
14 C 0.02 0.30 10.38 85.07 0.88 1.19 16
15 N -0.43 -9.42 9.52 -184.39 -1.76 -11.18 16
16 C -0.08 -2.23 2.14 -10.77 -0.02 -2.25 16
17 C -0.12 -3.61 4.81 30.67 0.15 -3.47 16
18 C 0.14 5.44 6.52 86.36 0.56 6.01 16
19 N -0.62 -29.23 2.77 -699.08 -1.94 -31.16 16
20 C -0.24 -13.96 10.04 84.04 0.84 -13.12 16
21 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16
22 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16
23 N -0.96 -61.16 13.97 21.65 0.30 -60.85 16
24 Si 0.95 47.62 24.35 68.60 1.67 49.29 16
25 H -0.28 -13.14 6.62 99.48 0.66 -12.48 16
26 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16
27 H -0.26 -12.68 6.64 99.48 0.66 -12.02 16
28 C 0.12 5.15 4.20 86.37 0.36 5.51 16
29 C -0.12 -4.07 4.97 30.68 0.15 -3.92 16
30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
31 H 0.06 1.71 6.46 -2.39 -0.02 1.70 16
32 H 0.07 1.95 6.46 -2.39 -0.02 1.94 16
33 H 0.41 10.04 6.16 -92.71 -0.57 9.47 16
34 H 0.14 2.85 7.63 -2.91 -0.02 2.82 16
35 H 0.17 1.34 6.25 -2.91 -0.02 1.32 16
36 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16
37 H 0.09 -0.03 8.07 -2.39 -0.02 -0.05 16
38 H 0.08 0.18 6.22 -2.38 -0.01 0.17 16
39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16
40 H 0.08 0.25 6.19 -2.39 -0.01 0.23 16
41 H 0.09 0.00 8.07 -2.39 -0.02 -0.02 16
42 H 0.18 1.93 6.14 -2.91 -0.02 1.92 16
43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
44 H 0.06 1.97 6.51 -2.39 -0.02 1.96 16
45 H 0.08 2.01 6.46 -2.39 -0.02 2.00 16
46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
47 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16
48 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16
49 H 0.03 1.26 7.08 -2.39 -0.02 1.25 16
50 H 0.05 2.29 4.50 -2.39 -0.01 2.27 16
51 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16
52 H 0.06 2.28 6.51 -2.39 -0.02 2.27 16
Total: -1.00 -75.97 394.59 2.10 -73.88
By element:
Atomic # 1 Polarization: 19.12 SS G_CDS: 0.27 Total: 19.40 kcal
Atomic # 6 Polarization: 0.20 SS G_CDS: 8.36 Total: 8.55 kcal
Atomic # 7 Polarization: -123.01 SS G_CDS: -8.14 Total: -131.15 kcal
Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.97 kcal
Atomic # 14 Polarization: 47.62 SS G_CDS: 1.67 Total: 49.29 kcal
Total: -75.97 2.10 -73.88 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997878074.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.542 kcal
(2) G-P(sol) polarization free energy of solvation -75.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.663 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds