Wall clock time and date at job start Wed Apr 1 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 N 1.46504 * 109.46871 * 239.99933 * 2 1 3 5 5 C 1.34782 * 119.99674 * 85.00206 * 4 2 1 6 6 O 1.21559 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.47841 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.39529 * 119.63299 * 180.02562 * 7 5 4 9 9 C 1.38227 * 119.15619 * 180.02562 * 8 7 5 10 10 C 1.39448 * 118.42787 * 0.02562 * 9 8 7 11 11 N 1.39072 * 120.40221 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.46490 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.39468 * 119.19791 * 0.24590 * 10 9 8 15 15 N 1.31321 * 120.77122 * 359.49951 * 14 10 9 16 16 C 1.52995 * 109.47005 * 120.00714 * 2 1 3 17 17 C 1.53039 * 109.46386 * 60.02300 * 16 2 1 18 18 C 1.53198 * 109.31468 * 178.60301 * 17 16 2 19 19 N 1.46931 * 108.76485 * 54.65412 * 18 17 16 20 20 C 1.36929 * 120.62750 * 126.40495 * 19 18 17 21 21 H 1.07996 * 120.00801 * 332.60980 * 20 19 18 22 22 C 1.38819 * 119.99570 * 152.60800 * 20 19 18 23 23 N 1.31625 * 119.99620 * 159.34502 * 22 20 19 24 24 Si 1.86793 * 120.00307 * 339.34648 * 22 20 19 25 25 H 1.48504 * 109.47212 * 92.93782 * 24 22 20 26 26 H 1.48501 * 109.47387 * 212.94434 * 24 22 20 27 27 H 1.48503 * 109.46934 * 332.94152 * 24 22 20 28 28 C 1.46925 * 118.73761 * 306.38622 * 19 18 17 29 29 C 1.53045 * 109.45634 * 299.96791 * 16 2 1 30 30 H 1.09003 * 109.46591 * 59.99430 * 1 2 3 31 31 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46808 * 300.00097 * 1 2 3 33 33 H 0.96993 * 120.00557 * 265.00393 * 4 2 1 34 34 H 1.08003 * 120.42532 * 0.02562 * 8 7 5 35 35 H 1.07996 * 120.78784 * 179.97438 * 9 8 7 36 36 H 1.09009 * 109.47095 * 270.00285 * 12 11 10 37 37 H 1.08998 * 109.47580 * 150.00405 * 12 11 10 38 38 H 1.09006 * 109.47106 * 29.99821 * 12 11 10 39 39 H 1.08995 * 109.47672 * 270.00042 * 13 11 10 40 40 H 1.09000 * 109.47175 * 29.99862 * 13 11 10 41 41 H 1.09001 * 109.47528 * 149.99650 * 13 11 10 42 42 H 1.07996 * 119.61260 * 179.72813 * 14 10 9 43 43 H 1.09001 * 109.46195 * 179.97438 * 16 2 1 44 44 H 1.09003 * 109.49858 * 298.56885 * 17 16 2 45 45 H 1.09001 * 109.49707 * 58.66624 * 17 16 2 46 46 H 1.08997 * 109.59376 * 294.87043 * 18 17 16 47 47 H 1.08994 * 109.70290 * 174.50315 * 18 17 16 48 48 H 0.96997 * 119.99888 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.58889 * 293.82261 * 28 19 18 50 50 H 1.08998 * 109.70077 * 173.46432 * 28 19 18 51 51 H 1.09000 * 109.49993 * 301.33647 * 29 16 2 52 52 H 1.08997 * 109.49926 * 61.43631 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1614 -2.4116 7 6 2.6403 -0.7150 -3.5642 8 6 2.7711 -0.0114 -4.7620 9 6 3.2327 -0.6727 -5.8846 10 6 3.5507 -2.0259 -5.7740 11 7 4.0182 -2.7315 -6.8775 12 6 4.1786 -2.0534 -8.1662 13 6 4.3501 -4.1527 -6.7513 14 6 3.3890 -2.6646 -4.5447 15 7 2.9524 -2.0044 -3.4969 16 6 2.0400 -0.7214 1.2491 17 6 1.5302 -2.1644 1.2485 18 6 2.0713 -2.8935 2.4824 19 7 1.7085 -2.1261 3.6817 20 6 1.0454 -2.7253 4.7191 21 1 0.4076 -3.5766 4.5326 22 6 1.1930 -2.2384 6.0107 23 7 0.2886 -2.5159 6.9259 24 14 2.6749 -1.1895 6.4499 25 1 2.3331 0.2457 6.2808 26 1 3.0605 -1.4436 7.8613 27 1 3.8093 -1.5367 5.5566 28 6 2.0712 -0.7038 3.7469 29 6 1.5303 0.0007 2.4986 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1528 34 1 2.5150 1.0367 -4.8114 35 1 3.3437 -0.1539 -6.8252 36 1 3.2529 -2.1330 -8.7364 37 1 4.9901 -2.5206 -8.7241 38 1 4.4119 -1.0021 -7.9971 39 1 5.3978 -4.2576 -6.4695 40 1 3.7209 -4.6062 -5.9856 41 1 4.1787 -4.6520 -7.7050 42 1 3.6290 -3.7135 -4.4527 43 1 3.1300 -0.7217 1.2488 44 1 0.4405 -2.1653 1.2739 45 1 1.8740 -2.6713 0.3468 46 1 3.1562 -2.9727 2.4137 47 1 1.6350 -3.8906 2.5408 48 1 0.3915 -2.1754 7.8283 49 1 3.1561 -0.6045 3.7812 50 1 1.6346 -0.2538 4.6384 51 1 1.8742 1.0349 2.4868 52 1 0.4406 -0.0208 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997878074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:26 Heat of formation + Delta-G solvation = 11.663286 kcal Electronic energy + Delta-G solvation = -30485.765562 eV Core-core repulsion = 26485.143202 eV Total energy + Delta-G solvation = -4000.622360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.70736 -40.68452 -39.51666 -37.72283 -36.89641 -34.52236 -33.42501 -33.00370 -31.88216 -31.59424 -30.29156 -29.30573 -27.17345 -26.72185 -24.92727 -24.42492 -24.22064 -23.16138 -22.25225 -21.40294 -20.23460 -19.28101 -18.60948 -18.14416 -17.73310 -17.19328 -16.68914 -16.34565 -16.07817 -16.03946 -15.88478 -15.55372 -15.32315 -15.22366 -15.09431 -14.90580 -14.48389 -14.44553 -14.26542 -13.98470 -13.75742 -13.61844 -13.53309 -13.38771 -13.22626 -13.01108 -12.93950 -12.61188 -12.55024 -12.32850 -12.15220 -12.00055 -11.72113 -11.51035 -11.43677 -11.29877 -11.12913 -11.03880 -10.66907 -10.62689 -10.50863 -10.05972 -8.89155 -8.43906 -8.14012 -5.44411 -0.14994 0.30858 1.31363 1.42104 1.51353 1.80260 2.02166 2.20891 2.43718 2.95449 3.08709 3.29644 3.39348 3.72185 3.75434 3.78132 3.85024 3.96284 4.05309 4.12533 4.28094 4.31866 4.38148 4.45119 4.47358 4.51487 4.56233 4.57695 4.71512 4.73692 4.76985 4.79496 4.86449 4.90019 4.91899 4.96084 4.99057 5.03656 5.09211 5.13255 5.18228 5.20997 5.28687 5.32546 5.41156 5.55380 5.65648 5.90489 6.08513 6.15748 6.20490 6.51651 6.90858 6.95675 7.25488 7.66544 8.07668 9.05962 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002103 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.642255 B =13308.563442 C =14061.421693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.078 0.922 4 N -0.699 5.699 5 C 0.574 3.426 6 O -0.580 6.580 7 C -0.023 4.023 8 C -0.059 4.059 9 C -0.174 4.174 10 C 0.195 3.805 11 N -0.619 5.619 12 C 0.079 3.921 13 C 0.077 3.923 14 C 0.019 3.981 15 N -0.428 5.428 16 C -0.076 4.076 17 C -0.119 4.119 18 C 0.143 3.857 19 N -0.619 5.619 20 C -0.243 4.243 21 H 0.052 0.948 22 C -0.038 4.038 23 N -0.958 5.958 24 Si 0.946 3.054 25 H -0.276 1.276 26 H -0.312 1.312 27 H -0.263 1.263 28 C 0.121 3.879 29 C -0.120 4.120 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.181 0.819 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.033 0.967 47 H 0.055 0.945 48 H 0.260 0.740 49 H 0.031 0.969 50 H 0.048 0.952 51 H 0.077 0.923 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 0.287 -35.793 37.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.096 0.904 4 N -0.350 5.350 5 C 0.361 3.639 6 O -0.460 6.460 7 C -0.161 4.161 8 C -0.081 4.081 9 C -0.204 4.204 10 C 0.085 3.915 11 N -0.325 5.325 12 C -0.063 4.063 13 C -0.064 4.064 14 C -0.149 4.149 15 N -0.138 5.138 16 C -0.095 4.095 17 C -0.158 4.158 18 C 0.019 3.981 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.070 0.930 22 C -0.232 4.232 23 N -0.604 5.604 24 Si 0.776 3.224 25 H -0.202 1.202 26 H -0.242 1.242 27 H -0.187 1.187 28 C -0.004 4.004 29 C -0.160 4.160 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.252 0.748 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.198 0.802 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.066 0.934 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.978 0.584 -35.046 36.444 hybrid contribution 0.486 0.362 0.297 0.675 sum 10.464 0.946 -34.749 36.303 Atomic orbital electron populations 1.22184 0.95036 1.02487 1.01897 1.20900 0.94357 0.96433 0.83285 0.90409 1.45956 1.65448 1.14923 1.08719 1.18119 0.76827 0.85644 0.83313 1.90729 1.53105 1.16676 1.85501 1.20570 1.09687 0.91460 0.94413 1.21912 0.93557 1.01340 0.91310 1.21303 1.05703 0.93003 1.00346 1.19219 0.91001 0.92112 0.89120 1.46612 1.67556 1.10516 1.07857 1.21981 1.02655 0.98602 0.83097 1.21998 1.01280 0.78844 1.04321 1.22779 1.03984 1.01222 0.86924 1.67262 1.06920 1.07646 1.32009 1.21190 1.00343 0.95320 0.92660 1.21982 1.00970 0.94971 0.97894 1.21099 0.97157 0.94431 0.85437 1.44485 1.67433 1.05343 1.17127 1.18875 1.18846 1.13333 0.86253 0.92995 1.25897 1.00341 1.01241 0.95732 1.69971 1.35388 1.50839 1.04240 0.85913 0.82183 0.78753 0.75586 1.20235 1.24158 1.18722 1.21370 0.97012 0.84489 0.97556 1.21978 1.01235 0.98894 0.93877 0.93313 0.91892 0.91066 0.74811 0.83844 0.81745 0.91998 0.89143 0.90615 0.91902 0.90516 0.89064 0.80212 0.90634 0.92119 0.90063 0.94866 0.92611 0.93086 0.95150 0.93381 0.90400 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 8.78 71.98 0.63 -3.72 16 2 C 0.15 4.28 2.40 44.99 0.11 4.38 16 3 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 4 N -0.70 -18.52 4.99 -445.39 -2.22 -20.74 16 5 C 0.57 16.63 7.76 86.78 0.67 17.30 16 6 O -0.58 -19.90 15.97 -3.90 -0.06 -19.97 16 7 C -0.02 -0.57 6.74 41.85 0.28 -0.29 16 8 C -0.06 -1.20 9.62 22.58 0.22 -0.98 16 9 C -0.17 -2.46 9.28 22.56 0.21 -2.25 16 10 C 0.20 2.61 6.57 38.58 0.25 2.86 16 11 N -0.62 -4.68 3.39 -746.79 -2.53 -7.22 16 12 C 0.08 0.23 10.20 127.77 1.30 1.53 16 13 C 0.08 0.26 10.20 127.77 1.30 1.56 16 14 C 0.02 0.30 10.38 85.07 0.88 1.19 16 15 N -0.43 -9.42 9.52 -184.39 -1.76 -11.18 16 16 C -0.08 -2.23 2.14 -10.77 -0.02 -2.25 16 17 C -0.12 -3.61 4.81 30.67 0.15 -3.47 16 18 C 0.14 5.44 6.52 86.36 0.56 6.01 16 19 N -0.62 -29.23 2.77 -699.08 -1.94 -31.16 16 20 C -0.24 -13.96 10.04 84.04 0.84 -13.12 16 21 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 22 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 23 N -0.96 -61.16 13.97 21.65 0.30 -60.85 16 24 Si 0.95 47.62 24.35 68.60 1.67 49.29 16 25 H -0.28 -13.14 6.62 99.48 0.66 -12.48 16 26 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 27 H -0.26 -12.68 6.64 99.48 0.66 -12.02 16 28 C 0.12 5.15 4.20 86.37 0.36 5.51 16 29 C -0.12 -4.07 4.97 30.68 0.15 -3.92 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.71 6.46 -2.39 -0.02 1.70 16 32 H 0.07 1.95 6.46 -2.39 -0.02 1.94 16 33 H 0.41 10.04 6.16 -92.71 -0.57 9.47 16 34 H 0.14 2.85 7.63 -2.91 -0.02 2.82 16 35 H 0.17 1.34 6.25 -2.91 -0.02 1.32 16 36 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 37 H 0.09 -0.03 8.07 -2.39 -0.02 -0.05 16 38 H 0.08 0.18 6.22 -2.38 -0.01 0.17 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.08 0.25 6.19 -2.39 -0.01 0.23 16 41 H 0.09 0.00 8.07 -2.39 -0.02 -0.02 16 42 H 0.18 1.93 6.14 -2.91 -0.02 1.92 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.97 6.51 -2.39 -0.02 1.96 16 45 H 0.08 2.01 6.46 -2.39 -0.02 2.00 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 48 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 49 H 0.03 1.26 7.08 -2.39 -0.02 1.25 16 50 H 0.05 2.29 4.50 -2.39 -0.01 2.27 16 51 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 52 H 0.06 2.28 6.51 -2.39 -0.02 2.27 16 Total: -1.00 -75.97 394.59 2.10 -73.88 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.27 Total: 19.40 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 8.36 Total: 8.55 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -8.14 Total: -131.15 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.67 Total: 49.29 kcal Total: -75.97 2.10 -73.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997878074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.542 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds