Wall clock time and date at job start Wed Apr 1 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47206 * 2 1 4 4 N 1.46496 * 109.47340 * 239.99584 * 2 1 3 5 5 C 1.34769 * 120.00349 * 84.99998 * 4 2 1 6 6 O 1.21518 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.48185 * 120.00518 * 180.02562 * 5 4 2 8 8 C 1.39037 * 119.68961 * 179.72791 * 7 5 4 9 9 C 1.39454 * 118.95411 * 179.77362 * 8 7 5 10 10 N 1.39190 * 120.83110 * 180.23890 * 9 8 7 11 11 C 1.46506 * 119.99814 * 174.51358 * 10 9 8 12 12 C 1.46492 * 120.00082 * 354.51954 * 10 9 8 13 13 C 1.39420 * 118.33580 * 0.49053 * 9 8 7 14 14 C 1.38235 * 119.26126 * 359.74829 * 13 9 8 15 15 N 1.31646 * 120.99657 * 0.02562 * 14 13 9 16 16 C 1.53005 * 109.46843 * 119.99335 * 2 1 3 17 17 C 1.53041 * 109.45614 * 60.03263 * 16 2 1 18 18 C 1.53195 * 109.30873 * 178.60215 * 17 16 2 19 19 N 1.46925 * 108.76835 * 54.65130 * 18 17 16 20 20 C 1.36938 * 120.62775 * 126.40488 * 19 18 17 21 21 H 1.07997 * 120.00213 * 333.76659 * 20 19 18 22 22 C 1.38817 * 119.99721 * 153.77156 * 20 19 18 23 23 N 1.31619 * 120.00050 * 156.54049 * 22 20 19 24 24 Si 1.86802 * 119.99684 * 336.53538 * 22 20 19 25 25 H 1.48500 * 109.47186 * 94.42713 * 24 22 20 26 26 H 1.48502 * 109.46952 * 214.42674 * 24 22 20 27 27 H 1.48493 * 109.47374 * 334.42433 * 24 22 20 28 28 C 1.46926 * 118.73666 * 306.38486 * 19 18 17 29 29 C 1.53037 * 109.46042 * 299.97450 * 16 2 1 30 30 H 1.09002 * 109.46688 * 60.00594 * 1 2 3 31 31 H 1.09001 * 109.47271 * 300.00682 * 1 2 3 32 32 H 1.08995 * 109.47535 * 180.02562 * 1 2 3 33 33 H 0.97009 * 119.99964 * 265.00402 * 4 2 1 34 34 H 1.08000 * 120.52153 * 0.02562 * 8 7 5 35 35 H 1.09006 * 109.46986 * 359.97215 * 11 10 9 36 36 H 1.08998 * 109.46680 * 119.96577 * 11 10 9 37 37 H 1.08996 * 109.47068 * 239.96805 * 11 10 9 38 38 H 1.08998 * 109.47217 * 89.99840 * 12 10 9 39 39 H 1.09004 * 109.47369 * 209.99342 * 12 10 9 40 40 H 1.08996 * 109.47461 * 329.99472 * 12 10 9 41 41 H 1.07993 * 120.36789 * 179.77058 * 13 9 8 42 42 H 1.08008 * 119.50255 * 180.02562 * 14 13 9 43 43 H 1.09004 * 109.46003 * 180.02562 * 16 2 1 44 44 H 1.09001 * 109.49342 * 298.56149 * 17 16 2 45 45 H 1.08992 * 109.50595 * 58.65906 * 17 16 2 46 46 H 1.09001 * 109.59543 * 294.86073 * 18 17 16 47 47 H 1.09005 * 109.70089 * 174.49963 * 18 17 16 48 48 H 0.96998 * 119.99803 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58221 * 293.82028 * 28 19 18 50 50 H 1.08999 * 109.69952 * 173.46785 * 28 19 18 51 51 H 1.08997 * 109.49415 * 301.33221 * 29 16 2 52 52 H 1.08994 * 109.49660 * 61.43702 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8585 1.1607 -2.4117 7 6 2.6406 -0.7172 -3.5671 8 6 2.7655 -0.0188 -4.7628 9 6 3.2359 -0.6903 -5.8909 10 7 3.3809 -0.0280 -7.1065 11 6 3.9886 -0.7167 -8.2479 12 6 2.9259 1.3576 -7.2446 13 6 3.5523 -2.0429 -5.7719 14 6 3.3960 -2.6683 -4.5490 15 7 2.9538 -2.0063 -3.5006 16 6 2.0399 -0.7211 1.2494 17 6 1.5302 -2.1642 1.2488 18 6 2.0713 -2.8930 2.4828 19 7 1.7084 -2.1256 3.6820 20 6 1.0452 -2.7247 4.7195 21 1 0.4222 -3.5876 4.5358 22 6 1.1736 -2.2229 6.0074 23 7 0.2377 -2.4593 6.9022 24 14 2.6748 -1.2122 6.4706 25 1 2.3693 0.2317 6.3060 26 1 3.0370 -1.4835 7.8849 27 1 3.8113 -1.5813 5.5890 28 6 2.0709 -0.7032 3.7470 29 6 1.5301 0.0010 2.4987 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6319 -1.1524 34 1 2.5062 1.0282 -4.8161 35 1 4.2623 -1.7308 -7.9567 36 1 3.2750 -0.7551 -9.0709 37 1 4.8806 -0.1765 -8.5652 38 1 3.7401 2.0348 -6.9865 39 1 2.6163 1.5376 -8.2741 40 1 2.0829 1.5316 -6.5759 41 1 3.9158 -2.5957 -6.6254 42 1 3.6403 -3.7160 -4.4524 43 1 3.1299 -0.7207 1.2495 44 1 0.4405 -2.1651 1.2741 45 1 1.8740 -2.6712 0.3473 46 1 3.1562 -2.9723 2.4142 47 1 1.6350 -3.8902 2.5413 48 1 0.3277 -2.1090 7.8022 49 1 3.1559 -0.6040 3.7814 50 1 1.6344 -0.2531 4.6385 51 1 1.8740 1.0352 2.4867 52 1 0.4405 -0.0206 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997879881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:33 Heat of formation + Delta-G solvation = 36.265307 kcal Electronic energy + Delta-G solvation = -30558.309874 eV Core-core repulsion = 26558.754338 eV Total energy + Delta-G solvation = -3999.555536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.91434 -39.62718 -38.18112 -37.27023 -35.45742 -32.92479 -31.95684 -31.59562 -31.10664 -30.26832 -29.19311 -28.70352 -25.95974 -25.52848 -24.42562 -23.17610 -22.72611 -22.27483 -20.82294 -20.22163 -18.85830 -18.36779 -17.28695 -16.75242 -16.54759 -15.88445 -15.75103 -15.60650 -15.12590 -15.06723 -14.71689 -14.51579 -14.37161 -14.14489 -13.95380 -13.65982 -13.44870 -13.24076 -13.12130 -12.89796 -12.88033 -12.66981 -12.51458 -12.14417 -11.82017 -11.75194 -11.69112 -11.61406 -11.05499 -10.99280 -10.62417 -10.53285 -10.36929 -10.31016 -10.07594 -9.78227 -9.69359 -9.53957 -9.49292 -9.36733 -8.96083 -8.54276 -8.13868 -6.92982 -5.91199 -3.23072 0.49073 1.13031 2.46273 2.69844 3.12604 3.36952 3.52910 3.56784 3.74532 4.04098 4.30863 4.37088 4.58356 4.65406 4.75462 4.76775 4.84030 4.95323 5.01640 5.03027 5.07329 5.12018 5.16279 5.21584 5.27854 5.35854 5.46155 5.49551 5.59498 5.60854 5.64621 5.81999 5.94965 5.99517 6.08958 6.16738 6.19883 6.22732 6.33248 6.43775 6.53800 6.56940 6.57570 6.60431 6.71823 6.74154 6.78893 6.79162 7.07098 7.45347 7.75696 8.01080 8.20455 8.37179 9.00073 9.77974 10.16600 11.24785 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.002053 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.155225 B =13635.566320 C =14076.950844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.085 0.915 4 N -0.699 5.699 5 C 0.569 3.431 6 O -0.539 6.539 7 C 0.123 3.877 8 C -0.189 4.189 9 C 0.243 3.757 10 N -0.627 5.627 11 C 0.087 3.913 12 C 0.088 3.912 13 C -0.238 4.238 14 C 0.141 3.859 15 N -0.500 5.500 16 C -0.086 4.086 17 C -0.132 4.132 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.257 4.257 21 H 0.085 0.915 22 C 0.022 3.978 23 N -0.906 5.906 24 Si 0.878 3.122 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.272 1.272 28 C 0.128 3.872 29 C -0.127 4.127 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.145 0.855 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.022 0.978 50 H 0.072 0.928 51 H 0.055 0.945 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 3.825 -31.982 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.103 0.897 4 N -0.350 5.350 5 C 0.353 3.647 6 O -0.416 6.416 7 C -0.015 4.015 8 C -0.215 4.215 9 C 0.132 3.868 10 N -0.338 5.338 11 C -0.056 4.056 12 C -0.055 4.055 13 C -0.263 4.263 14 C -0.018 4.018 15 N -0.215 5.215 16 C -0.105 4.105 17 C -0.171 4.171 18 C 0.023 3.977 19 N -0.329 5.329 20 C -0.385 4.385 21 H 0.102 0.898 22 C -0.176 4.176 23 N -0.549 5.549 24 Si 0.708 3.292 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.197 1.197 28 C 0.003 3.997 29 C -0.167 4.167 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.155 0.845 42 H 0.179 0.821 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.040 0.960 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.812 4.354 -31.182 32.213 hybrid contribution 1.118 0.573 -0.572 1.380 sum 7.930 4.927 -31.753 33.097 Atomic orbital electron populations 1.22239 0.95041 1.02654 1.02212 1.21151 0.94496 0.96933 0.83407 0.89687 1.46074 1.64978 1.14989 1.08955 1.17911 0.77959 0.86017 0.82822 1.90762 1.50856 1.15226 1.84799 1.20919 0.96955 0.90297 0.93298 1.21581 1.06337 1.02170 0.91399 1.17981 0.91658 0.91339 0.85814 1.46281 1.65409 1.13359 1.08793 1.21775 0.97731 0.98175 0.87890 1.21732 0.99982 0.81126 1.02651 1.21850 1.10203 0.93614 1.00681 1.22504 0.92428 0.99761 0.87073 1.67615 1.13920 1.07623 1.32322 1.21316 1.00148 0.95968 0.93087 1.22121 1.01651 0.94724 0.98569 1.20905 0.96365 0.94645 0.85801 1.44353 1.67421 1.04123 1.16953 1.18915 1.20551 1.13890 0.85193 0.89765 1.25246 0.97849 0.98772 0.95760 1.69878 1.31972 1.48111 1.04973 0.86997 0.86068 0.79422 0.76718 1.21666 1.23205 1.19662 1.21278 0.96674 0.85339 0.96438 1.22086 1.01781 0.97854 0.94975 0.92856 0.90930 0.91861 0.75087 0.83707 0.90164 0.92302 0.92300 0.92761 0.91036 0.90810 0.84465 0.82112 0.91227 0.91221 0.92956 0.96163 0.91933 0.92869 0.95989 0.90961 0.92682 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.78 37.16 0.33 -1.95 16 2 C 0.14 2.04 2.40 -67.93 -0.16 1.88 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 N -0.70 -9.43 4.99 -54.64 -0.27 -9.70 16 5 C 0.57 8.18 7.78 -12.18 -0.09 8.09 16 6 O -0.54 -9.01 15.98 5.35 0.09 -8.93 16 7 C 0.12 1.54 6.75 -83.05 -0.56 0.98 16 8 C -0.19 -2.07 8.74 -38.83 -0.34 -2.41 16 9 C 0.24 2.15 6.56 -83.63 -0.55 1.61 16 10 N -0.63 -4.19 3.40 -187.37 -0.64 -4.83 16 11 C 0.09 0.33 10.63 59.85 0.64 0.97 16 12 C 0.09 0.46 10.14 59.84 0.61 1.07 16 13 C -0.24 -1.81 9.36 -39.14 -0.37 -2.18 16 14 C 0.14 1.21 11.17 -17.63 -0.20 1.02 16 15 N -0.50 -5.74 9.54 -9.89 -0.09 -5.83 16 16 C -0.09 -1.33 2.14 -90.58 -0.19 -1.52 16 17 C -0.13 -2.08 4.81 -26.61 -0.13 -2.21 16 18 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 19 N -0.60 -14.32 2.77 -172.32 -0.48 -14.80 16 20 C -0.26 -7.20 10.02 -15.06 -0.15 -7.35 16 21 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 22 C 0.02 0.65 5.18 -17.43 -0.09 0.56 16 23 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 24 Si 0.88 22.59 24.41 -169.99 -4.15 18.44 16 25 H -0.29 -7.19 6.66 56.52 0.38 -6.81 16 26 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 27 H -0.27 -6.90 6.74 56.52 0.38 -6.52 16 28 C 0.13 2.81 4.23 -3.71 -0.02 2.79 16 29 C -0.13 -2.23 4.96 -26.61 -0.13 -2.37 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 32 H 0.06 0.87 6.46 -51.93 -0.34 0.54 16 33 H 0.41 5.22 6.17 -40.82 -0.25 4.97 16 34 H 0.15 1.57 6.01 -52.49 -0.32 1.25 16 35 H 0.08 0.25 5.40 -51.93 -0.28 -0.03 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 40 H 0.07 0.44 6.50 -51.93 -0.34 0.10 16 41 H 0.14 0.66 5.88 -52.49 -0.31 0.35 16 42 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.16 6.51 -51.93 -0.34 0.83 16 45 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.02 0.48 7.18 -51.93 -0.37 0.11 16 50 H 0.07 1.74 4.57 -51.93 -0.24 1.50 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.07 1.30 6.51 -51.93 -0.34 0.96 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -33.86 394.85 -8.25 -42.11 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.00 Total: 2.89 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.44 Total: 1.86 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.71 Total: -62.32 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.15 Total: 18.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.86 -8.25 -42.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997879881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.379 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds