Wall clock time and date at job start Wed Apr 1 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.68658 * 2 1 4 4 C 1.53263 * 109.58344 * 120.33585 * 2 1 3 5 5 C 1.53186 * 109.42493 * 170.05709 * 4 2 1 6 6 C 1.53374 * 109.21907 * 290.65006 * 5 4 2 7 7 C 1.51112 * 108.24622 * 48.85094 * 6 5 4 8 8 N 1.30559 * 127.08896 * 163.98835 * 7 6 5 9 9 C 1.33457 * 109.68225 * 180.02562 * 8 7 6 10 10 C 1.36827 * 107.83822 * 359.97438 * 9 8 7 11 11 C 1.46759 * 126.91677 * 179.97438 * 10 9 8 12 12 O 1.21678 * 120.00211 * 201.88213 * 11 10 9 13 13 N 1.34777 * 119.99989 * 21.88194 * 11 10 9 14 14 C 1.46495 * 120.00315 * 185.50077 * 13 11 10 15 15 H 1.08999 * 109.47423 * 34.99861 * 14 13 11 16 16 C 1.53001 * 109.47607 * 155.00178 * 14 13 11 17 17 C 1.52997 * 109.47720 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46642 * 299.99748 * 17 16 14 19 19 H 1.08996 * 109.47461 * 299.99695 * 18 17 16 20 20 N 1.46503 * 109.46770 * 179.97438 * 18 17 16 21 21 C 1.36941 * 119.99791 * 154.99867 * 20 18 17 22 22 H 1.08002 * 119.99626 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00076 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99867 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47390 * 59.99983 * 25 23 21 27 27 H 1.48503 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47359 * 299.99951 * 25 23 21 29 29 C 1.53000 * 109.47232 * 60.00117 * 18 17 16 30 30 C 1.52999 * 109.46823 * 299.99906 * 29 18 17 31 31 N 1.34867 * 123.92325 * 343.97849 * 7 6 5 32 32 H 1.08998 * 109.47079 * 154.18481 * 1 2 3 33 33 H 1.09003 * 109.46613 * 274.18174 * 1 2 3 34 34 H 1.09002 * 109.47488 * 34.18248 * 1 2 3 35 35 H 1.08993 * 109.47376 * 290.03585 * 4 2 1 36 36 H 1.09001 * 109.47357 * 50.05127 * 4 2 1 37 37 H 1.09006 * 109.50340 * 170.73811 * 5 4 2 38 38 H 1.08994 * 109.52601 * 50.58433 * 5 4 2 39 39 H 1.08995 * 109.71388 * 289.15683 * 6 5 4 40 40 H 1.09005 * 109.70731 * 168.53416 * 6 5 4 41 41 H 1.08003 * 126.08086 * 179.97438 * 9 8 7 42 42 H 0.97002 * 120.00004 * 5.50157 * 13 11 10 43 43 H 1.09007 * 109.46518 * 300.00296 * 16 14 13 44 44 H 1.08999 * 109.46988 * 59.99416 * 16 14 13 45 45 H 1.09002 * 109.47136 * 59.99351 * 17 16 14 46 46 H 1.08991 * 109.47064 * 180.02562 * 17 16 14 47 47 H 0.96996 * 119.99880 * 335.00453 * 20 18 17 48 48 H 0.96998 * 119.99661 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.47242 * 59.99444 * 29 18 17 50 50 H 1.09004 * 109.47362 * 179.97438 * 29 18 17 51 51 H 1.08994 * 109.47322 * 299.99648 * 30 29 18 52 52 H 1.09001 * 109.47098 * 180.02562 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0437 -0.7293 1.2463 5 6 3.5551 -0.9461 1.1229 6 6 3.8290 -1.9771 0.0209 7 6 3.0400 -1.5800 -1.2052 8 7 3.2115 -2.0110 -2.4256 9 6 2.3235 -1.4313 -3.2360 10 6 1.5526 -0.5907 -2.4802 11 6 0.4489 0.2547 -2.9505 12 8 0.1077 1.2261 -2.3020 13 7 -0.1867 -0.0450 -4.1005 14 6 -1.2059 0.8630 -4.6323 15 1 -0.9235 1.8932 -4.4154 16 6 -1.3185 0.6730 -6.1463 17 6 -2.3824 1.6218 -6.7018 18 6 -3.7311 1.3147 -6.0476 19 1 -4.0140 0.2847 -6.2645 20 7 -4.7498 2.2236 -6.5791 21 6 -6.0688 1.8558 -6.5671 22 1 -6.3581 0.8958 -6.1655 23 6 -7.0340 2.7167 -7.0711 24 7 -6.6814 3.8864 -7.5610 25 14 -8.8333 2.2152 -7.0542 26 1 -9.2660 1.9710 -5.6548 27 1 -9.6556 3.3018 -7.6446 28 1 -9.0088 0.9740 -7.8502 29 6 -3.6186 1.5048 -4.5336 30 6 -2.5545 0.5560 -3.9782 31 7 2.0208 -0.6968 -1.1909 32 1 -0.3633 -0.9251 -0.4475 33 1 -0.3633 0.0749 1.0250 34 1 -0.3634 0.8501 -0.5774 35 1 1.8338 -0.1286 2.1312 36 1 1.5438 -1.6939 1.3347 37 1 3.9487 -1.3133 2.0708 38 1 4.0388 -0.0033 0.8678 39 1 3.5149 -2.9656 0.3559 40 1 4.8932 -1.9892 -0.2149 41 1 2.2301 -1.5965 -4.2992 42 1 0.0307 -0.8620 -4.5762 43 1 -0.3577 0.8922 -6.6123 44 1 -1.6008 -0.3572 -6.3631 45 1 -2.0996 2.6519 -6.4849 46 1 -2.4629 1.4860 -7.7802 47 1 -4.4899 3.0858 -6.9395 48 1 -7.3558 4.4878 -7.9135 49 1 -3.3357 2.5348 -4.3168 50 1 -4.5795 1.2864 -4.0676 51 1 -2.8374 -0.4740 -4.1950 52 1 -2.4747 0.6911 -2.8996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034650764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:50 Heat of formation + Delta-G solvation = 15.618913 kcal Electronic energy + Delta-G solvation = -30897.808004 eV Core-core repulsion = 26897.357173 eV Total energy + Delta-G solvation = -4000.450831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.80480 -39.84435 -37.92020 -37.48239 -34.95465 -34.00699 -33.11201 -31.06109 -30.90417 -30.41811 -29.56944 -27.69662 -26.92638 -23.99964 -23.28848 -23.10975 -22.41162 -22.21458 -21.08501 -20.36881 -19.61275 -19.25676 -18.02079 -17.00754 -16.55157 -16.06041 -15.93030 -15.39786 -15.19765 -15.06477 -14.93109 -14.48269 -14.28340 -13.92811 -13.80708 -13.69816 -13.56177 -13.32230 -13.09785 -12.59811 -12.58416 -12.56147 -12.04600 -11.97526 -11.81827 -11.65257 -11.63379 -11.45457 -11.19177 -10.94721 -10.80803 -10.76272 -10.70668 -10.52946 -10.20952 -10.11880 -9.95514 -9.88717 -9.75418 -9.58445 -9.02671 -8.84355 -8.66483 -6.93280 -5.74570 -3.03030 1.11879 2.16647 2.56281 3.09440 3.14423 3.44765 3.49239 3.50165 3.82059 4.01679 4.12475 4.17140 4.50343 4.60522 4.69923 4.74003 4.82758 4.88410 4.92139 5.02675 5.03837 5.15562 5.19861 5.26773 5.27620 5.36185 5.44587 5.52008 5.52515 5.59308 5.65844 5.68714 5.72030 5.80681 5.86561 5.91205 6.00787 6.06201 6.23898 6.26752 6.29237 6.31097 6.47769 6.56804 6.64832 6.72425 6.77148 6.99150 7.15328 7.35882 7.66359 7.71294 8.08109 8.44385 9.55156 10.13882 10.48356 11.48102 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.002010 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.955393 B =13924.158131 C =14566.357465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.134 3.866 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.225 3.775 8 N -0.492 5.492 9 C 0.030 3.970 10 C -0.077 4.077 11 C 0.591 3.409 12 O -0.534 6.534 13 N -0.711 5.711 14 C 0.149 3.851 15 H 0.088 0.912 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.177 3.823 19 H 0.046 0.954 20 N -0.725 5.725 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.131 4.131 30 C -0.123 4.123 31 N -0.416 5.416 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.178 0.822 42 H 0.400 0.600 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.058 0.942 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.198 -12.011 16.469 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.032 3.968 3 H 0.115 0.885 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.037 4.037 8 N -0.211 5.211 9 C -0.124 4.124 10 C -0.195 4.195 11 C 0.378 3.622 12 O -0.413 6.413 13 N -0.360 5.360 14 C 0.046 3.954 15 H 0.106 0.894 16 C -0.158 4.158 17 C -0.159 4.159 18 C 0.067 3.933 19 H 0.064 0.936 20 N -0.366 5.366 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.173 4.173 30 C -0.162 4.162 31 N -0.097 5.097 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.195 0.805 42 H 0.235 0.765 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.272 -11.819 16.820 31.051 hybrid contribution -1.487 0.235 -0.155 1.513 sum 21.785 -11.584 16.665 29.774 Atomic orbital electron populations 1.22574 0.92132 1.05311 1.03691 1.21691 0.96747 0.96397 0.81939 0.88542 1.22079 0.96261 1.01932 0.96822 1.21735 0.95888 0.99783 0.99215 1.20284 0.99456 0.99711 0.87966 1.23449 0.91527 0.92948 0.95777 1.69927 1.25132 1.26264 0.99752 1.22679 0.94274 0.95727 0.99707 1.20676 1.04555 1.08488 0.85741 1.16732 0.80322 0.83923 0.81264 1.90681 1.66609 1.29053 1.54931 1.45859 1.40023 1.25905 1.24249 1.21157 0.86993 0.93941 0.93319 0.89362 1.21765 0.99745 1.01034 0.93266 1.21751 0.94862 0.98828 1.00461 1.20245 0.87874 0.94598 0.90601 0.93589 1.42422 1.02514 1.18794 1.72830 1.19194 0.83491 1.00651 1.33497 0.91302 1.24741 0.97962 0.96616 1.01764 1.69652 1.32691 1.09148 1.46707 0.86285 0.85250 0.77200 0.77560 1.21332 1.21736 1.21320 1.22223 0.97315 0.98397 0.99322 1.21896 0.94232 1.00288 0.99829 1.45387 1.25149 1.32030 1.07135 0.92454 0.91097 0.87352 0.89008 0.90480 0.89659 0.90964 0.88929 0.88357 0.80462 0.76526 0.91713 0.91422 0.91951 0.91278 0.78304 0.93510 0.92507 0.91821 0.92295 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.17 37.16 0.30 -1.45 16 2 C 0.13 1.17 3.27 -67.82 -0.22 0.95 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -0.73 5.12 -26.50 -0.14 -0.86 16 5 C -0.13 -0.58 5.96 -26.44 -0.16 -0.74 16 6 C -0.04 -0.21 6.33 -27.49 -0.17 -0.39 16 7 C 0.23 2.28 7.63 -155.33 -1.19 1.09 16 8 N -0.49 -5.81 11.20 -10.35 -0.12 -5.93 16 9 C 0.03 0.33 11.39 -17.36 -0.20 0.13 16 10 C -0.08 -0.89 6.53 -82.36 -0.54 -1.43 16 11 C 0.59 7.41 7.09 -12.82 -0.09 7.31 16 12 O -0.53 -8.08 12.71 5.21 0.07 -8.02 16 13 N -0.71 -7.64 5.04 -55.09 -0.28 -7.92 16 14 C 0.15 1.89 2.41 -67.93 -0.16 1.73 16 15 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 16 C -0.12 -1.42 5.39 -26.73 -0.14 -1.57 16 17 C -0.12 -1.87 5.39 -26.73 -0.14 -2.02 16 18 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.73 -17.99 5.12 -53.42 -0.27 -18.26 16 21 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 25 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C -0.13 -2.35 5.50 -26.73 -0.15 -2.49 16 30 C -0.12 -1.77 5.50 -26.73 -0.15 -1.92 16 31 N -0.42 -4.39 2.96 -102.73 -0.30 -4.70 16 32 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 33 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 34 H 0.11 1.36 5.01 -51.93 -0.26 1.10 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.18 1.39 7.91 -52.48 -0.42 0.98 16 42 H 0.40 3.28 8.05 -40.82 -0.33 2.95 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -33.45 403.39 -11.55 -45.00 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.85 Total: 9.50 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.58 Total: -5.67 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.25 Total: -64.32 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.45 -11.55 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034650764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.619 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds