Wall clock time and date at job start Wed Apr 1 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.68658 * 2 1 4 4 C 1.53263 * 109.58344 * 120.33585 * 2 1 3 5 5 C 1.53186 * 109.42493 * 170.05709 * 4 2 1 6 6 C 1.53374 * 109.21907 * 290.65006 * 5 4 2 7 7 C 1.51112 * 108.24622 * 48.85094 * 6 5 4 8 8 N 1.30559 * 127.08896 * 163.98835 * 7 6 5 9 9 C 1.33457 * 109.68225 * 180.02562 * 8 7 6 10 10 C 1.36827 * 107.83822 * 359.97438 * 9 8 7 11 11 C 1.46759 * 126.91677 * 179.97438 * 10 9 8 12 12 O 1.21678 * 120.00211 * 201.88213 * 11 10 9 13 13 N 1.34777 * 119.99989 * 21.88194 * 11 10 9 14 14 C 1.46495 * 120.00315 * 185.50077 * 13 11 10 15 15 H 1.08999 * 109.47423 * 34.99861 * 14 13 11 16 16 C 1.53001 * 109.47607 * 155.00178 * 14 13 11 17 17 C 1.52997 * 109.47720 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46642 * 299.99748 * 17 16 14 19 19 H 1.08996 * 109.47461 * 299.99695 * 18 17 16 20 20 N 1.46503 * 109.46770 * 179.97438 * 18 17 16 21 21 C 1.36941 * 119.99791 * 154.99867 * 20 18 17 22 22 H 1.08002 * 119.99626 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00076 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99867 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47390 * 59.99983 * 25 23 21 27 27 H 1.48503 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47359 * 299.99951 * 25 23 21 29 29 C 1.53000 * 109.47232 * 60.00117 * 18 17 16 30 30 C 1.52999 * 109.46823 * 299.99906 * 29 18 17 31 31 N 1.34867 * 123.92325 * 343.97849 * 7 6 5 32 32 H 1.08998 * 109.47079 * 154.18481 * 1 2 3 33 33 H 1.09003 * 109.46613 * 274.18174 * 1 2 3 34 34 H 1.09002 * 109.47488 * 34.18248 * 1 2 3 35 35 H 1.08993 * 109.47376 * 290.03585 * 4 2 1 36 36 H 1.09001 * 109.47357 * 50.05127 * 4 2 1 37 37 H 1.09006 * 109.50340 * 170.73811 * 5 4 2 38 38 H 1.08994 * 109.52601 * 50.58433 * 5 4 2 39 39 H 1.08995 * 109.71388 * 289.15683 * 6 5 4 40 40 H 1.09005 * 109.70731 * 168.53416 * 6 5 4 41 41 H 1.08003 * 126.08086 * 179.97438 * 9 8 7 42 42 H 0.97002 * 120.00004 * 5.50157 * 13 11 10 43 43 H 1.09007 * 109.46518 * 300.00296 * 16 14 13 44 44 H 1.08999 * 109.46988 * 59.99416 * 16 14 13 45 45 H 1.09002 * 109.47136 * 59.99351 * 17 16 14 46 46 H 1.08991 * 109.47064 * 180.02562 * 17 16 14 47 47 H 0.96996 * 119.99880 * 335.00453 * 20 18 17 48 48 H 0.96998 * 119.99661 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.47242 * 59.99444 * 29 18 17 50 50 H 1.09004 * 109.47362 * 179.97438 * 29 18 17 51 51 H 1.08994 * 109.47322 * 299.99648 * 30 29 18 52 52 H 1.09001 * 109.47098 * 180.02562 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0437 -0.7293 1.2463 5 6 3.5551 -0.9461 1.1229 6 6 3.8290 -1.9771 0.0209 7 6 3.0400 -1.5800 -1.2052 8 7 3.2115 -2.0110 -2.4256 9 6 2.3235 -1.4313 -3.2360 10 6 1.5526 -0.5907 -2.4802 11 6 0.4489 0.2547 -2.9505 12 8 0.1077 1.2261 -2.3020 13 7 -0.1867 -0.0450 -4.1005 14 6 -1.2059 0.8630 -4.6323 15 1 -0.9235 1.8932 -4.4154 16 6 -1.3185 0.6730 -6.1463 17 6 -2.3824 1.6218 -6.7018 18 6 -3.7311 1.3147 -6.0476 19 1 -4.0140 0.2847 -6.2645 20 7 -4.7498 2.2236 -6.5791 21 6 -6.0688 1.8558 -6.5671 22 1 -6.3581 0.8958 -6.1655 23 6 -7.0340 2.7167 -7.0711 24 7 -6.6814 3.8864 -7.5610 25 14 -8.8333 2.2152 -7.0542 26 1 -9.2660 1.9710 -5.6548 27 1 -9.6556 3.3018 -7.6446 28 1 -9.0088 0.9740 -7.8502 29 6 -3.6186 1.5048 -4.5336 30 6 -2.5545 0.5560 -3.9782 31 7 2.0208 -0.6968 -1.1909 32 1 -0.3633 -0.9251 -0.4475 33 1 -0.3633 0.0749 1.0250 34 1 -0.3634 0.8501 -0.5774 35 1 1.8338 -0.1286 2.1312 36 1 1.5438 -1.6939 1.3347 37 1 3.9487 -1.3133 2.0708 38 1 4.0388 -0.0033 0.8678 39 1 3.5149 -2.9656 0.3559 40 1 4.8932 -1.9892 -0.2149 41 1 2.2301 -1.5965 -4.2992 42 1 0.0307 -0.8620 -4.5762 43 1 -0.3577 0.8922 -6.6123 44 1 -1.6008 -0.3572 -6.3631 45 1 -2.0996 2.6519 -6.4849 46 1 -2.4629 1.4860 -7.7802 47 1 -4.4899 3.0858 -6.9395 48 1 -7.3558 4.4878 -7.9135 49 1 -3.3357 2.5348 -4.3168 50 1 -4.5795 1.2864 -4.0676 51 1 -2.8374 -0.4740 -4.1950 52 1 -2.4747 0.6911 -2.8996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034650764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:48 Heat of formation + Delta-G solvation = -5.214187 kcal Electronic energy + Delta-G solvation = -30898.711395 eV Core-core repulsion = 26897.357173 eV Total energy + Delta-G solvation = -4001.354222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.56022 -40.89873 -39.19991 -38.08451 -36.39910 -34.72825 -34.61056 -32.58888 -31.77623 -31.69206 -30.57981 -28.82811 -27.86912 -25.65920 -24.25204 -23.94277 -23.58448 -22.96763 -22.33938 -21.33469 -20.85424 -20.01154 -19.19969 -18.70703 -17.46693 -17.11909 -16.77025 -16.66575 -16.28409 -15.95936 -15.61676 -15.53946 -15.40337 -15.15883 -15.07492 -14.91067 -14.61030 -14.34957 -14.02271 -13.93764 -13.50579 -13.33354 -13.27735 -13.11224 -13.07606 -12.79519 -12.64761 -12.43457 -12.30588 -12.18493 -12.07844 -12.03569 -12.03120 -11.68081 -11.66952 -11.50145 -11.36954 -11.17582 -10.88214 -10.77575 -10.72927 -10.06693 -9.45853 -8.98732 -7.92930 -5.20903 0.28803 1.40523 1.46474 1.49330 1.55298 1.75895 2.21597 2.23862 2.56923 3.24847 3.39587 3.47424 3.54464 3.63166 3.73269 3.80120 3.86527 3.91133 4.03369 4.14757 4.27822 4.28874 4.33645 4.37397 4.40008 4.42472 4.51988 4.56547 4.59979 4.65323 4.69860 4.83249 4.85995 4.90043 4.93755 4.99921 5.04033 5.08062 5.13221 5.18641 5.23966 5.25822 5.26075 5.28485 5.48823 5.50449 5.55710 5.56910 5.64616 6.06561 6.29785 6.47507 6.88384 7.16855 7.35181 8.13285 8.35488 9.30474 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.002010 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.955393 B =13924.158131 C =14566.357465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.037 4.037 7 C 0.226 3.774 8 N -0.522 5.522 9 C 0.035 3.965 10 C -0.103 4.103 11 C 0.591 3.409 12 O -0.566 6.566 13 N -0.696 5.696 14 C 0.159 3.841 15 H 0.069 0.931 16 C -0.106 4.106 17 C -0.113 4.113 18 C 0.171 3.829 19 H 0.047 0.953 20 N -0.739 5.739 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.276 1.276 29 C -0.121 4.121 30 C -0.111 4.111 31 N -0.422 5.422 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.202 0.798 42 H 0.416 0.584 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.040 0.960 50 H 0.039 0.961 51 H 0.073 0.927 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.929 -14.416 17.663 33.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.028 3.972 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.160 4.160 6 C -0.076 4.076 7 C -0.036 4.036 8 N -0.240 5.240 9 C -0.119 4.119 10 C -0.220 4.220 11 C 0.379 3.621 12 O -0.447 6.447 13 N -0.347 5.347 14 C 0.055 3.945 15 H 0.087 0.913 16 C -0.145 4.145 17 C -0.152 4.152 18 C 0.063 3.937 19 H 0.065 0.935 20 N -0.378 5.378 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.202 1.202 29 C -0.162 4.162 30 C -0.150 4.150 31 N -0.103 5.103 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.219 0.781 42 H 0.254 0.746 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.203 0.797 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.091 0.909 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.035 -14.287 18.028 33.998 hybrid contribution -1.955 0.951 -0.471 2.224 sum 23.080 -13.335 17.557 31.918 Atomic orbital electron populations 1.22442 0.93166 1.03094 1.04211 1.21834 0.95936 0.96517 0.82952 0.89508 1.22098 0.96902 1.01881 0.95568 1.21739 0.95049 0.99219 0.99950 1.20540 0.99438 1.00828 0.86771 1.24281 0.90991 0.91780 0.96581 1.69973 1.25999 1.27371 1.00701 1.23129 0.93361 0.94689 1.00764 1.20638 1.05105 1.09495 0.86745 1.16918 0.80421 0.83597 0.81201 1.90689 1.67597 1.30465 1.55900 1.45601 1.39111 1.26113 1.23873 1.20878 0.86343 0.93423 0.93890 0.91323 1.21668 0.99627 1.01059 0.92122 1.21633 0.93807 0.99513 1.00198 1.20504 0.88516 0.93424 0.91219 0.93504 1.42665 1.02885 1.19158 1.73119 1.19581 0.84886 1.00504 1.31842 0.90773 1.25551 1.02130 0.96910 1.02564 1.69813 1.33565 1.10319 1.48461 0.85250 0.80267 0.76822 0.77681 1.20686 1.22310 1.20242 1.22012 0.97392 0.98433 0.98364 1.21749 0.94158 0.99909 0.99190 1.45584 1.25304 1.32195 1.07235 0.93820 0.89059 0.90323 0.86993 0.90256 0.86751 0.91476 0.87448 0.87355 0.78106 0.74640 0.89083 0.89376 0.92755 0.91392 0.79706 0.94155 0.94137 0.94190 0.90862 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 8.17 71.98 0.59 -2.76 16 2 C 0.13 2.16 3.27 45.09 0.15 2.31 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.13 -1.08 5.12 30.74 0.16 -0.92 16 5 C -0.12 -0.74 5.96 30.78 0.18 -0.56 16 6 C -0.04 -0.36 6.33 30.10 0.19 -0.17 16 7 C 0.23 4.23 7.63 138.30 1.06 5.28 16 8 N -0.52 -11.55 11.20 -186.67 -2.09 -13.64 16 9 C 0.03 0.70 11.39 84.11 0.96 1.66 16 10 C -0.10 -2.32 6.53 40.14 0.26 -2.06 16 11 C 0.59 14.63 7.09 86.47 0.61 15.25 16 12 O -0.57 -17.59 12.71 -4.28 -0.05 -17.65 16 13 N -0.70 -13.97 5.04 -446.44 -2.25 -16.22 16 14 C 0.16 3.86 2.41 44.99 0.11 3.97 16 15 H 0.07 2.00 7.66 -2.39 -0.02 1.98 16 16 C -0.11 -2.28 5.39 30.59 0.16 -2.11 16 17 C -0.11 -3.43 5.39 30.60 0.16 -3.26 16 18 C 0.17 6.60 2.77 44.99 0.12 6.72 16 19 H 0.05 1.80 8.08 -2.39 -0.02 1.79 16 20 N -0.74 -37.44 5.12 -322.92 -1.65 -39.09 16 21 C -0.24 -13.19 9.93 84.03 0.83 -12.36 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 24 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 25 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 C -0.12 -4.41 5.50 30.59 0.17 -4.25 16 30 C -0.11 -3.14 5.50 30.59 0.17 -2.97 16 31 N -0.42 -8.58 2.96 -478.92 -1.42 -10.00 16 32 H 0.04 0.94 8.00 -2.39 -0.02 0.93 16 33 H 0.09 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.08 2.06 5.01 -2.39 -0.01 2.05 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 38 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.20 2.70 7.91 -2.91 -0.02 2.68 16 42 H 0.42 5.76 8.05 -92.71 -0.75 5.01 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 48 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 Total: -1.00 -75.02 403.39 0.66 -74.36 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.54 Total: 33.81 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.36 Total: -0.39 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -7.13 Total: -138.83 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.02 0.66 -74.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034650764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.144 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds