Wall clock time and date at job start Wed Apr 1 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47185 * 179.97438 * 8 6 5 10 10 N 1.31073 * 125.96341 * 90.02520 * 9 8 6 11 11 N 1.40286 * 108.27232 * 179.97438 * 10 9 8 12 12 H 0.97002 * 126.09533 * 179.89882 * 11 10 9 13 13 C 1.34325 * 107.81975 * 359.94602 * 11 10 9 14 14 C 1.35759 * 107.83975 * 359.82143 * 13 11 10 15 15 C 1.50842 * 124.10326 * 179.44651 * 14 13 11 16 16 C 1.53367 * 108.44526 * 344.03257 * 15 14 13 17 17 C 1.53107 * 109.50505 * 49.71686 * 16 15 14 18 18 C 1.50825 * 128.03780 * 180.18475 * 13 11 10 19 19 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 20 20 C 1.53195 * 108.89273 * 53.53793 * 19 5 4 21 21 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 22 22 H 1.09007 * 109.45640 * 298.70737 * 21 2 1 23 23 N 1.46499 * 109.46160 * 58.66119 * 21 2 1 24 24 C 1.36928 * 120.00250 * 205.00378 * 23 21 2 25 25 H 1.08000 * 120.00193 * 359.97438 * 24 23 21 26 26 C 1.38812 * 120.00515 * 180.02562 * 24 23 21 27 27 N 1.31626 * 119.99431 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00596 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47200 * 59.99138 * 28 26 24 30 30 H 1.48495 * 109.47377 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46835 * 299.99442 * 28 26 24 32 32 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 33 33 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 34 34 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 35 35 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 36 36 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 37 37 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 38 38 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 39 39 H 1.09003 * 109.84007 * 224.18389 * 15 14 13 40 40 H 1.09001 * 109.49189 * 103.68372 * 15 14 13 41 41 H 1.08997 * 109.46762 * 289.70233 * 16 15 14 42 42 H 1.09003 * 109.46468 * 169.72172 * 16 15 14 43 43 H 1.09001 * 109.46614 * 169.70437 * 17 16 15 44 44 H 1.08994 * 109.46972 * 49.72054 * 17 16 15 45 45 H 1.09002 * 109.67517 * 283.12666 * 18 13 11 46 46 H 1.08998 * 109.68400 * 43.67837 * 18 13 11 47 47 H 1.09002 * 109.58751 * 173.39743 * 19 5 4 48 48 H 1.08996 * 109.58750 * 293.67928 * 19 5 4 49 49 H 1.08997 * 109.50046 * 65.38734 * 20 19 5 50 50 H 1.09003 * 109.49733 * 185.48713 * 20 19 5 51 51 H 0.97007 * 119.99658 * 24.99911 * 23 21 2 52 52 H 0.97006 * 119.99397 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4094 0.0645 3.3285 10 7 6.6874 -0.6044 4.4209 11 7 7.2630 0.2809 5.3444 12 1 7.5652 0.0572 6.2386 13 6 7.3204 1.4939 4.7702 14 6 6.8026 1.3871 3.5198 15 6 6.6783 2.5395 2.5545 16 6 6.8402 3.8481 3.3378 17 6 8.0946 3.7688 4.2121 18 6 7.8592 2.7750 5.3562 19 6 4.1053 -1.4267 -0.0306 20 6 3.5713 -0.6980 -1.2679 21 6 2.0409 -0.7231 -1.2483 22 1 1.6967 -1.7573 -1.2352 23 7 1.5266 -0.0530 -2.4453 24 6 1.3965 -0.7493 -3.6171 25 1 1.6734 -1.7923 -3.6592 26 6 0.9097 -0.1143 -4.7515 27 7 0.5727 1.1571 -4.7004 28 14 0.7328 -1.0639 -6.3503 29 1 -0.1985 -2.2029 -6.1491 30 1 0.1950 -0.1652 -7.4030 31 1 2.0611 -1.5788 -6.7697 32 1 -0.3634 0.5126 0.8906 33 1 -0.3633 0.5151 -0.8893 34 1 -0.3633 -1.0277 -0.0015 35 1 1.6052 -1.7215 1.2981 36 1 1.7638 -0.1579 2.1389 37 1 6.0588 -1.5488 1.9759 38 1 6.1321 0.0577 1.2128 39 1 5.6994 2.5171 2.0756 40 1 7.4592 2.4657 1.7975 41 1 5.9660 4.0036 3.9699 42 1 6.9361 4.6798 2.6397 43 1 8.3121 4.7536 4.6255 44 1 8.9379 3.4342 3.6080 45 1 7.1368 3.1892 6.0595 46 1 8.8000 2.5767 5.8696 47 1 5.1896 -1.3246 0.0139 48 1 3.8397 -2.4824 -0.0852 49 1 3.9164 0.3358 -1.2585 50 1 3.9340 -1.1951 -2.1676 51 1 1.2782 0.8839 -2.4076 52 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036031754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:40 Heat of formation + Delta-G solvation = 28.564107 kcal Electronic energy + Delta-G solvation = -31100.690419 eV Core-core repulsion = 27100.800933 eV Total energy + Delta-G solvation = -3999.889485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.73139 -39.95614 -37.61294 -36.69534 -34.56727 -33.71509 -32.78180 -31.44298 -30.40480 -29.55409 -29.30029 -28.56642 -26.08451 -24.84233 -23.75848 -22.80962 -22.29590 -21.65026 -20.81289 -19.59458 -18.92230 -18.59330 -17.67871 -17.13114 -16.98200 -15.79461 -15.50688 -15.23609 -14.92497 -14.39506 -14.14014 -14.11883 -14.02027 -13.77274 -13.75928 -13.48807 -13.28493 -13.26145 -12.97867 -12.88032 -12.44765 -12.19338 -12.15371 -11.97546 -11.68578 -11.54137 -11.19434 -11.14508 -11.07245 -10.91866 -10.81144 -10.78846 -10.60114 -10.54139 -10.37691 -10.22492 -9.81954 -9.72115 -9.60206 -9.29042 -8.89115 -8.40667 -8.36457 -6.95934 -5.77206 -3.05707 1.73404 2.51375 2.66677 2.77239 3.27685 3.42820 3.47768 3.48555 4.27411 4.41980 4.54782 4.57798 4.58926 4.68953 4.91845 4.96341 5.07942 5.11398 5.21820 5.28361 5.29764 5.33316 5.35346 5.39916 5.41086 5.48815 5.54851 5.63508 5.67331 5.71471 5.74836 5.82566 5.86592 5.97742 6.00903 6.11553 6.12018 6.18020 6.19252 6.32630 6.42102 6.46185 6.51558 6.58952 6.67511 6.83621 6.94903 7.07770 7.16739 7.57426 7.58303 7.68429 8.32305 8.41198 9.52488 10.10347 10.45202 11.45234 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002326 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.511938 B =12033.869203 C =12524.552554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.607 5.607 6 C 0.521 3.479 7 O -0.538 6.538 8 C -0.062 4.062 9 C 0.109 3.891 10 N -0.287 5.287 11 N -0.470 5.470 12 H 0.436 0.564 13 C 0.083 3.917 14 C -0.219 4.219 15 C -0.043 4.043 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.056 4.056 19 C 0.105 3.895 20 C -0.152 4.152 21 C 0.184 3.816 22 H 0.047 0.953 23 N -0.720 5.720 24 C -0.237 4.237 25 H 0.069 0.931 26 C -0.013 4.013 27 N -0.933 5.933 28 Si 0.905 3.095 29 H -0.287 1.287 30 H -0.292 1.292 31 H -0.287 1.287 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.854 1.697 19.378 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.340 5.340 6 C 0.308 3.692 7 O -0.415 6.415 8 C -0.104 4.104 9 C -0.057 4.057 10 N -0.110 5.110 11 N -0.177 5.177 12 H 0.279 0.721 13 C -0.047 4.047 14 C -0.230 4.230 15 C -0.082 4.082 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.095 4.095 19 C -0.018 4.018 20 C -0.193 4.193 21 C 0.073 3.927 22 H 0.065 0.935 23 N -0.361 5.361 24 C -0.369 4.369 25 H 0.087 0.913 26 C -0.209 4.209 27 N -0.581 5.581 28 Si 0.736 3.264 29 H -0.213 1.213 30 H -0.218 1.218 31 H -0.213 1.213 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.511 0.698 20.306 25.562 hybrid contribution 0.034 0.306 -0.912 0.962 sum 15.546 1.004 19.394 24.876 Atomic orbital electron populations 1.21658 0.94204 1.01737 1.01788 1.21731 0.96504 1.00038 0.94624 0.91258 1.21684 0.78485 1.00710 0.99259 1.48132 1.07115 1.60643 1.18122 1.20239 0.88513 0.77827 0.82626 1.90694 1.75297 1.44503 1.31054 1.20035 0.92291 1.03585 0.94489 1.21202 0.98039 0.92391 0.94102 1.77408 1.18553 1.15546 0.99468 1.45846 1.50536 1.06017 1.15326 0.72089 1.20854 1.01271 0.88396 0.94149 1.19694 1.11410 0.95285 0.96610 1.19999 1.01995 0.90570 0.95600 1.21592 0.97853 0.97465 0.98810 1.21538 0.98851 0.98334 0.96313 1.20354 1.00669 0.90072 0.98408 1.21892 0.97599 0.97485 0.84818 1.22692 1.00375 1.00465 0.95777 1.20194 0.90388 0.95671 0.86400 0.93494 1.42401 1.76495 1.11422 1.05743 1.19166 1.35929 0.94070 0.87708 0.91306 1.24725 1.02122 0.96017 0.98024 1.69654 1.49972 1.09477 1.28977 0.86303 0.77725 0.78714 0.83641 1.21342 1.21781 1.21333 0.93875 0.90777 0.93089 0.91715 0.89490 0.87470 0.86863 0.90923 0.91313 0.91641 0.91269 0.91040 0.91334 0.89832 0.90405 0.90449 0.91407 0.92108 0.90530 0.78225 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.02 37.16 0.34 -1.90 16 2 C -0.11 -1.79 2.46 -90.50 -0.22 -2.02 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.80 5.72 -3.71 -0.02 1.78 16 5 N -0.61 -8.55 2.97 -172.77 -0.51 -9.06 16 6 C 0.52 7.76 7.69 -10.98 -0.08 7.68 16 7 O -0.54 -9.99 15.45 5.55 0.09 -9.91 16 8 C -0.06 -0.74 4.48 -29.04 -0.13 -0.87 16 9 C 0.11 1.47 5.71 -82.53 -0.47 1.00 16 10 N -0.29 -4.01 12.71 33.59 0.43 -3.59 16 11 N -0.47 -5.06 7.34 33.48 0.25 -4.82 16 12 H 0.44 3.17 8.96 -182.45 -1.64 1.53 16 13 C 0.08 0.86 7.08 -82.33 -0.58 0.28 16 14 C -0.22 -2.65 5.91 -105.05 -0.62 -3.27 16 15 C -0.04 -0.45 6.05 -27.62 -0.17 -0.61 16 16 C -0.12 -0.99 5.90 -26.49 -0.16 -1.15 16 17 C -0.11 -0.73 5.90 -26.49 -0.16 -0.89 16 18 C -0.06 -0.38 6.30 -27.63 -0.17 -0.55 16 19 C 0.11 1.31 6.34 -3.71 -0.02 1.29 16 20 C -0.15 -2.43 5.67 -26.59 -0.15 -2.58 16 21 C 0.18 3.40 2.19 -67.87 -0.15 3.25 16 22 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 23 N -0.72 -17.01 4.41 -53.37 -0.24 -17.25 16 24 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 25 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 26 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 27 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 28 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 37 H 0.11 1.08 7.94 -51.93 -0.41 0.67 16 38 H 0.11 1.11 7.62 -51.93 -0.40 0.71 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 51 H 0.38 9.82 7.50 -40.82 -0.31 9.52 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -33.79 407.28 -11.28 -45.07 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -10.11 Total: 8.74 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.02 Total: -5.44 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.65 Total: -61.45 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.79 -11.28 -45.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036031754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.634 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds