Wall clock time and date at job start Wed Apr 1 2020 04:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47185 * 179.97438 * 8 6 5 10 10 N 1.31073 * 125.96341 * 90.02520 * 9 8 6 11 11 N 1.40286 * 108.27232 * 179.97438 * 10 9 8 12 12 H 0.97002 * 126.09533 * 179.89882 * 11 10 9 13 13 C 1.34325 * 107.81975 * 359.94602 * 11 10 9 14 14 C 1.35759 * 107.83975 * 359.82143 * 13 11 10 15 15 C 1.50842 * 124.10326 * 179.44651 * 14 13 11 16 16 C 1.53367 * 108.44526 * 344.03257 * 15 14 13 17 17 C 1.53107 * 109.50505 * 49.71686 * 16 15 14 18 18 C 1.50825 * 128.03780 * 180.18475 * 13 11 10 19 19 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 20 20 C 1.53195 * 108.89273 * 53.53793 * 19 5 4 21 21 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 22 22 H 1.09007 * 109.45640 * 298.70737 * 21 2 1 23 23 N 1.46499 * 109.46160 * 58.66119 * 21 2 1 24 24 C 1.36928 * 120.00250 * 205.00378 * 23 21 2 25 25 H 1.08000 * 120.00193 * 359.97438 * 24 23 21 26 26 C 1.38812 * 120.00515 * 180.02562 * 24 23 21 27 27 N 1.31626 * 119.99431 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00596 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47200 * 59.99138 * 28 26 24 30 30 H 1.48495 * 109.47377 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46835 * 299.99442 * 28 26 24 32 32 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 33 33 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 34 34 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 35 35 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 36 36 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 37 37 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 38 38 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 39 39 H 1.09003 * 109.84007 * 224.18389 * 15 14 13 40 40 H 1.09001 * 109.49189 * 103.68372 * 15 14 13 41 41 H 1.08997 * 109.46762 * 289.70233 * 16 15 14 42 42 H 1.09003 * 109.46468 * 169.72172 * 16 15 14 43 43 H 1.09001 * 109.46614 * 169.70437 * 17 16 15 44 44 H 1.08994 * 109.46972 * 49.72054 * 17 16 15 45 45 H 1.09002 * 109.67517 * 283.12666 * 18 13 11 46 46 H 1.08998 * 109.68400 * 43.67837 * 18 13 11 47 47 H 1.09002 * 109.58751 * 173.39743 * 19 5 4 48 48 H 1.08996 * 109.58750 * 293.67928 * 19 5 4 49 49 H 1.08997 * 109.50046 * 65.38734 * 20 19 5 50 50 H 1.09003 * 109.49733 * 185.48713 * 20 19 5 51 51 H 0.97007 * 119.99658 * 24.99911 * 23 21 2 52 52 H 0.97006 * 119.99397 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4094 0.0645 3.3285 10 7 6.6874 -0.6044 4.4209 11 7 7.2630 0.2809 5.3444 12 1 7.5652 0.0572 6.2386 13 6 7.3204 1.4939 4.7702 14 6 6.8026 1.3871 3.5198 15 6 6.6783 2.5395 2.5545 16 6 6.8402 3.8481 3.3378 17 6 8.0946 3.7688 4.2121 18 6 7.8592 2.7750 5.3562 19 6 4.1053 -1.4267 -0.0306 20 6 3.5713 -0.6980 -1.2679 21 6 2.0409 -0.7231 -1.2483 22 1 1.6967 -1.7573 -1.2352 23 7 1.5266 -0.0530 -2.4453 24 6 1.3965 -0.7493 -3.6171 25 1 1.6734 -1.7923 -3.6592 26 6 0.9097 -0.1143 -4.7515 27 7 0.5727 1.1571 -4.7004 28 14 0.7328 -1.0639 -6.3503 29 1 -0.1985 -2.2029 -6.1491 30 1 0.1950 -0.1652 -7.4030 31 1 2.0611 -1.5788 -6.7697 32 1 -0.3634 0.5126 0.8906 33 1 -0.3633 0.5151 -0.8893 34 1 -0.3633 -1.0277 -0.0015 35 1 1.6052 -1.7215 1.2981 36 1 1.7638 -0.1579 2.1389 37 1 6.0588 -1.5488 1.9759 38 1 6.1321 0.0577 1.2128 39 1 5.6994 2.5171 2.0756 40 1 7.4592 2.4657 1.7975 41 1 5.9660 4.0036 3.9699 42 1 6.9361 4.6798 2.6397 43 1 8.3121 4.7536 4.6255 44 1 8.9379 3.4342 3.6080 45 1 7.1368 3.1892 6.0595 46 1 8.8000 2.5767 5.8696 47 1 5.1896 -1.3246 0.0139 48 1 3.8397 -2.4824 -0.0852 49 1 3.9164 0.3358 -1.2585 50 1 3.9340 -1.1951 -2.1676 51 1 1.2782 0.8839 -2.4076 52 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036031754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:39 Heat of formation + Delta-G solvation = 7.543633 kcal Electronic energy + Delta-G solvation = -31101.601935 eV Core-core repulsion = 27100.800933 eV Total energy + Delta-G solvation = -4000.801001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.57118 -41.16101 -38.98253 -37.36207 -36.13412 -34.76657 -34.20861 -33.00858 -31.25609 -30.89599 -30.32240 -29.50199 -27.37417 -26.49541 -24.43611 -24.38407 -23.06071 -22.97537 -21.89871 -20.91283 -19.78995 -19.61063 -18.99480 -18.46831 -18.19854 -16.92105 -16.73809 -16.44237 -16.18457 -15.67148 -15.45767 -15.19880 -15.00397 -14.83513 -14.76627 -14.59972 -14.49592 -14.17342 -14.09576 -13.91005 -13.75298 -13.47707 -13.12101 -12.98118 -12.86347 -12.80846 -12.79163 -12.70707 -12.42870 -12.17751 -11.99419 -11.81678 -11.76642 -11.72161 -11.62737 -11.45441 -11.37074 -11.11855 -10.99454 -10.79138 -10.22401 -9.63123 -9.20017 -8.92628 -7.87811 -5.14996 0.88774 1.50790 1.52729 1.57671 1.58504 1.63425 1.91008 2.20119 2.60808 3.45165 3.51862 3.60693 3.69313 3.82478 3.89511 3.94974 4.04134 4.07161 4.12939 4.15414 4.31200 4.34949 4.36688 4.44023 4.52206 4.55789 4.63565 4.66437 4.70007 4.78289 4.79717 4.81731 4.85593 4.87612 5.02288 5.02872 5.05331 5.07631 5.21548 5.25385 5.29197 5.35354 5.42285 5.42894 5.49361 5.54781 5.59796 5.67425 5.70812 6.33516 6.43562 6.46083 6.71832 7.16906 7.40183 8.16882 8.39995 9.35631 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002326 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.511938 B =12033.869203 C =12524.552554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.053 0.947 4 C 0.128 3.872 5 N -0.606 5.606 6 C 0.521 3.479 7 O -0.580 6.580 8 C -0.058 4.058 9 C 0.090 3.910 10 N -0.324 5.324 11 N -0.465 5.465 12 H 0.448 0.552 13 C 0.089 3.911 14 C -0.247 4.247 15 C -0.042 4.042 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.055 4.055 19 C 0.112 3.888 20 C -0.143 4.143 21 C 0.179 3.821 22 H 0.047 0.953 23 N -0.731 5.731 24 C -0.228 4.228 25 H 0.078 0.922 26 C -0.078 4.078 27 N -0.971 5.971 28 Si 0.967 3.033 29 H -0.280 1.280 30 H -0.301 1.301 31 H -0.277 1.277 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.070 0.930 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.052 0.812 20.504 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.071 0.929 4 C 0.005 3.995 5 N -0.338 5.338 6 C 0.310 3.690 7 O -0.460 6.460 8 C -0.099 4.099 9 C -0.075 4.075 10 N -0.148 5.148 11 N -0.173 5.173 12 H 0.294 0.706 13 C -0.041 4.041 14 C -0.258 4.258 15 C -0.081 4.081 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.093 4.093 19 C -0.011 4.011 20 C -0.183 4.183 21 C 0.070 3.930 22 H 0.065 0.935 23 N -0.370 5.370 24 C -0.360 4.360 25 H 0.096 0.904 26 C -0.269 4.269 27 N -0.623 5.623 28 Si 0.797 3.203 29 H -0.207 1.207 30 H -0.228 1.228 31 H -0.203 1.203 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.122 0.878 47 H 0.130 0.870 48 H 0.104 0.896 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.202 0.798 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.745 -0.248 21.462 27.849 hybrid contribution -0.647 0.584 -1.146 1.439 sum 17.099 0.336 20.316 26.556 Atomic orbital electron populations 1.21578 0.94203 1.01933 1.01099 1.21586 0.96472 0.99112 0.94631 0.92871 1.21541 0.79375 1.01034 0.97566 1.48192 1.06726 1.60383 1.18522 1.20753 0.89732 0.76656 0.81905 1.90673 1.76253 1.46315 1.32753 1.20103 0.89708 1.05198 0.94932 1.21505 0.98353 0.93175 0.94467 1.77306 1.20076 1.17059 1.00312 1.45893 1.49891 1.05914 1.15637 0.70553 1.21439 0.99779 0.89242 0.93651 1.20028 1.12502 0.95376 0.97918 1.20002 1.01009 0.91250 0.95815 1.21602 0.98459 0.96667 0.99029 1.21542 0.97690 0.99442 0.95921 1.20535 1.01951 0.88176 0.98668 1.21971 0.99383 0.97577 0.82136 1.22479 0.98011 1.00341 0.97505 1.20432 0.92057 0.95182 0.85289 0.93541 1.42583 1.76916 1.10854 1.06679 1.19555 1.33634 0.94409 0.88444 0.90435 1.25477 1.03308 0.96906 1.01255 1.69819 1.52092 1.11103 1.29258 0.85300 0.77905 0.77309 0.79791 1.20684 1.22813 1.20334 0.91998 0.93983 0.92385 0.90173 0.90390 0.85388 0.84801 0.93230 0.90282 0.92958 0.90245 0.88804 0.91050 0.88971 0.87763 0.87022 0.89551 0.93274 0.91172 0.79821 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.02 71.98 0.65 -3.65 16 2 C -0.10 -3.22 2.46 -10.71 -0.03 -3.25 16 3 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.13 3.68 5.72 86.36 0.49 4.17 16 5 N -0.61 -16.12 2.97 -818.91 -2.44 -18.56 16 6 C 0.52 15.00 7.69 87.65 0.67 15.68 16 7 O -0.58 -21.59 15.45 -3.04 -0.05 -21.64 16 8 C -0.06 -1.29 4.48 29.10 0.13 -1.16 16 9 C 0.09 2.36 5.71 42.92 0.24 2.61 16 10 N -0.32 -8.82 12.71 -47.63 -0.61 -9.43 16 11 N -0.46 -9.45 7.34 -47.98 -0.35 -9.80 16 12 H 0.45 5.91 8.96 -213.20 -1.91 4.00 16 13 C 0.09 1.72 7.08 41.64 0.29 2.01 16 14 C -0.25 -5.79 5.91 -20.14 -0.12 -5.91 16 15 C -0.04 -0.85 6.05 30.02 0.18 -0.67 16 16 C -0.12 -1.84 5.90 30.75 0.18 -1.66 16 17 C -0.11 -1.12 5.90 30.75 0.18 -0.94 16 18 C -0.05 -0.59 6.30 30.01 0.19 -0.40 16 19 C 0.11 2.49 6.34 86.36 0.55 3.03 16 20 C -0.14 -4.38 5.67 30.68 0.17 -4.20 16 21 C 0.18 6.54 2.19 45.03 0.10 6.64 16 22 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 23 N -0.73 -35.04 4.41 -322.77 -1.42 -36.46 16 24 C -0.23 -12.09 9.93 84.03 0.83 -11.25 16 25 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 26 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 27 N -0.97 -58.74 13.06 21.65 0.28 -58.45 16 28 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 31 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.65 7.36 -2.38 -0.02 1.63 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.43 7.00 -2.39 -0.02 2.42 16 37 H 0.13 2.25 7.94 -2.38 -0.02 2.23 16 38 H 0.13 2.33 7.62 -2.38 -0.02 2.31 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 1.79 5.93 -2.39 -0.01 1.77 16 48 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.37 19.62 7.50 -92.70 -0.70 18.93 16 52 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -75.24 407.28 0.97 -74.28 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.68 Total: 35.58 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 5.20 Total: -2.81 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -4.53 Total: -132.70 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.24 0.97 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036031754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds