Wall clock time and date at job start Wed Apr 1 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.52384 * 2 1 4 4 C 1.53186 * 109.49899 * 239.91648 * 2 1 3 5 5 N 1.46929 * 108.77791 * 185.41503 * 4 2 1 6 6 C 1.34778 * 120.63059 * 233.58999 * 5 4 2 7 7 O 1.21621 * 120.00080 * 5.09982 * 6 5 4 8 8 C 1.47160 * 119.99702 * 185.11143 * 6 5 4 9 9 C 1.38407 * 126.88522 * 92.54322 * 8 6 5 10 10 C 1.50693 * 127.32296 * 359.97438 * 9 8 6 11 11 C 1.53785 * 113.61446 * 219.13805 * 10 9 8 12 12 C 1.53953 * 87.01643 * 220.04387 * 11 10 9 13 13 C 1.53771 * 113.61757 * 121.52949 * 10 9 8 14 14 C 1.39676 * 105.35556 * 180.02562 * 9 8 6 15 15 N 1.30858 * 107.86557 * 359.74027 * 14 9 8 16 16 N 1.28442 * 110.92818 * 0.43970 * 15 14 9 17 17 C 1.46493 * 125.19505 * 179.81471 * 16 15 14 18 18 C 1.46928 * 118.73748 * 53.85461 * 5 4 2 19 19 C 1.53624 * 108.54421 * 306.09706 * 18 5 4 20 20 C 1.53037 * 109.23879 * 54.85785 * 19 18 5 21 21 H 1.09000 * 109.45943 * 178.48840 * 20 19 18 22 22 N 1.46502 * 109.46446 * 58.53153 * 20 19 18 23 23 C 1.36936 * 119.99795 * 84.92400 * 22 20 19 24 24 H 1.07997 * 120.00792 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99711 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99823 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00204 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46816 * 90.00407 * 27 25 23 29 29 H 1.48496 * 109.47374 * 210.00204 * 27 25 23 30 30 H 1.48495 * 109.47154 * 330.00766 * 27 25 23 31 31 H 1.09004 * 109.46997 * 180.08473 * 1 2 3 32 32 H 1.09004 * 109.47154 * 300.08528 * 1 2 3 33 33 H 1.08999 * 109.46835 * 60.08460 * 1 2 3 34 34 H 1.09001 * 109.58756 * 65.62642 * 4 2 1 35 35 H 1.08999 * 109.58582 * 305.19904 * 4 2 1 36 36 H 1.09008 * 112.84871 * 350.32993 * 10 9 8 37 37 H 1.08999 * 113.61378 * 334.56864 * 11 10 9 38 38 H 1.09005 * 113.61151 * 105.46805 * 11 10 9 39 39 H 1.09000 * 113.53723 * 270.80365 * 12 11 10 40 40 H 1.09000 * 113.66130 * 139.93711 * 12 11 10 41 41 H 1.09003 * 113.61433 * 254.52466 * 13 10 9 42 42 H 1.08998 * 113.61880 * 25.34648 * 13 10 9 43 43 H 1.08003 * 126.06717 * 180.02562 * 14 9 8 44 44 H 1.09003 * 109.47470 * 264.67028 * 17 16 15 45 45 H 1.09005 * 109.47414 * 144.67060 * 17 16 15 46 46 H 1.08999 * 109.46921 * 24.67555 * 17 16 15 47 47 H 1.08999 * 109.58515 * 65.93423 * 18 5 4 48 48 H 1.09002 * 109.58437 * 186.35488 * 18 5 4 49 49 H 1.09000 * 109.63652 * 294.86116 * 19 18 5 50 50 H 1.09005 * 109.45377 * 174.73972 * 19 18 5 51 51 H 0.97000 * 119.99634 * 264.93302 * 22 20 19 52 52 H 0.97005 * 120.00177 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2811 -0.3864 -2.1782 7 8 3.7790 0.1893 -3.1245 8 6 5.7365 -0.6000 -2.1346 9 6 6.4365 -1.6648 -2.6748 10 6 5.8716 -2.8424 -3.4265 11 6 6.5601 -4.1757 -3.0900 12 6 6.4637 -4.5114 -4.5894 13 6 6.4386 -2.9956 -4.8476 14 6 7.7777 -1.4164 -2.3742 15 7 7.8390 -0.2877 -1.7149 16 7 6.6673 0.2128 -1.5523 17 6 6.3744 1.4670 -0.8542 18 6 4.1050 -1.4317 0.0285 19 6 3.5708 -0.6948 1.2661 20 6 2.0408 -0.7230 1.2484 21 1 1.6581 -0.2243 2.1389 22 7 1.5783 -2.1130 1.2310 23 6 1.4482 -2.8060 2.4048 24 1 1.6861 -2.3279 3.3435 25 6 1.0105 -4.1232 2.3883 26 7 0.7210 -4.7061 1.2443 27 14 0.8323 -5.0685 3.9895 28 1 -0.5398 -4.8802 4.5254 29 1 1.0728 -6.5127 3.7413 30 1 1.8220 -4.5640 4.9749 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5152 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.7638 -0.1580 -2.1388 35 1 1.6053 -1.7216 -1.2979 36 1 4.7834 -2.8897 -3.3830 37 1 7.5835 -4.0607 -2.7332 38 1 5.9605 -4.8289 -2.4560 39 1 5.5376 -5.0165 -4.8637 40 1 7.3504 -5.0071 -4.9846 41 1 5.7411 -2.6977 -5.6305 42 1 7.4282 -2.5562 -4.9727 43 1 8.6160 -2.0422 -2.6427 44 1 6.1119 1.2534 0.1820 45 1 5.5403 1.9693 -1.3442 46 1 7.2530 2.1115 -0.8811 47 1 3.8339 -2.4861 0.0822 48 1 5.1896 -1.3331 -0.0174 49 1 3.9159 0.3390 1.2542 50 1 3.9334 -1.1890 2.1675 51 1 1.3644 -2.5423 0.3879 52 1 0.4147 -5.6265 1.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036035605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:19 Heat of formation + Delta-G solvation = 75.075064 kcal Electronic energy + Delta-G solvation = -32525.920607 eV Core-core repulsion = 28528.047988 eV Total energy + Delta-G solvation = -3997.872619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59969 -39.86294 -38.57311 -37.70070 -34.36064 -33.38029 -32.93776 -31.48778 -31.01379 -29.23399 -27.65085 -26.45685 -25.56156 -25.41679 -24.95641 -23.57039 -22.15279 -21.74963 -21.38613 -19.45031 -19.05642 -18.47560 -17.50708 -17.29642 -16.57818 -15.74379 -15.70701 -15.51964 -15.05799 -14.67507 -14.46560 -14.37017 -14.04208 -13.91932 -13.50954 -13.36346 -13.11648 -12.97519 -12.79801 -12.57211 -12.54022 -12.42479 -12.27353 -12.22551 -11.67532 -11.45564 -11.26208 -10.95225 -10.92205 -10.85985 -10.59544 -10.57553 -10.53811 -10.45513 -10.30570 -10.23841 -9.93759 -9.91067 -9.61714 -9.12802 -8.97833 -8.60601 -8.37256 -7.03373 -5.83695 -3.12483 1.69136 2.12926 2.63876 2.78213 3.19966 3.38500 3.44412 3.45850 4.34047 4.45300 4.53252 4.63533 4.74176 4.78798 4.93240 5.01951 5.08634 5.10810 5.19789 5.22436 5.27815 5.31555 5.43643 5.47053 5.53895 5.61296 5.64940 5.70788 5.73563 5.76721 5.82694 5.88498 5.92896 5.97073 6.02007 6.04674 6.16566 6.24029 6.28914 6.30903 6.41615 6.47112 6.51916 6.54348 6.60653 6.67655 6.72767 6.84355 6.91223 7.50704 7.64130 8.05192 8.14481 8.34535 9.46490 10.02011 10.37111 11.38578 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.003800 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.089469 B = 7365.890951 C = 8439.967228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.585 5.585 6 C 0.588 3.412 7 O -0.536 6.536 8 C -0.014 4.014 9 C -0.143 4.143 10 C -0.037 4.037 11 C -0.130 4.130 12 C -0.142 4.142 13 C -0.128 4.128 14 C 0.009 3.991 15 N -0.288 5.288 16 N -0.276 5.276 17 C 0.087 3.913 18 C 0.117 3.883 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.182 0.818 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 8.269 -7.725 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.004 4.004 5 N -0.316 5.316 6 C 0.372 3.628 7 O -0.413 6.413 8 C -0.142 4.142 9 C -0.153 4.153 10 C -0.057 4.057 11 C -0.167 4.167 12 C -0.180 4.180 13 C -0.166 4.166 14 C -0.169 4.169 15 N -0.118 5.118 16 N -0.064 5.064 17 C -0.053 4.053 18 C -0.005 4.005 19 C -0.189 4.189 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.205 4.205 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.199 0.801 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.727 9.401 -7.436 16.769 hybrid contribution -0.627 -1.263 0.460 1.483 sum 11.100 8.138 -6.976 15.431 Atomic orbital electron populations 1.21666 0.94008 1.03312 1.00527 1.21703 0.96670 0.98765 0.95588 0.91622 1.21758 0.77747 1.01978 0.98929 1.48120 1.07255 1.58599 1.17644 1.17084 0.84023 0.78942 0.82739 1.90802 1.74394 1.42064 1.33993 1.21329 0.91436 0.95882 1.05583 1.20457 0.92881 0.96896 1.05094 1.20839 0.99611 0.90677 0.94530 1.22988 1.01051 0.96106 0.96590 1.22852 1.02093 0.96334 0.96698 1.22937 1.01360 0.96141 0.96146 1.23266 0.96679 0.95112 1.01838 1.73114 1.05933 1.12490 1.20234 1.45470 1.02635 1.18509 1.39737 1.22167 1.03795 0.81918 0.97456 1.21807 0.96204 0.99186 0.83294 1.22617 1.00687 0.98276 0.97361 1.20210 0.90580 0.87506 0.94865 0.93006 1.42463 1.78933 1.07637 1.06980 1.19199 1.37463 0.93888 0.86520 0.91281 1.24692 1.02140 0.97142 0.96574 1.69642 1.51526 1.13102 1.23652 0.86252 0.77767 0.79418 0.83090 1.21794 1.21850 1.20855 0.90940 0.92718 0.93691 0.89547 0.90189 0.88838 0.89910 0.90983 0.90120 0.91460 0.91501 0.90023 0.80143 0.89538 0.89146 0.88255 0.89328 0.91653 0.93568 0.90633 0.78083 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.06 37.16 0.34 -1.75 16 2 C -0.11 -1.65 2.67 -90.50 -0.24 -1.90 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.90 5.43 -3.71 -0.02 1.88 16 5 N -0.58 -9.27 2.97 -173.87 -0.52 -9.78 16 6 C 0.59 9.65 6.71 -12.64 -0.08 9.57 16 7 O -0.54 -10.18 16.52 5.26 0.09 -10.10 16 8 C -0.01 -0.21 4.69 -82.06 -0.38 -0.59 16 9 C -0.14 -1.98 5.49 -104.03 -0.57 -2.55 16 10 C -0.04 -0.47 4.11 -90.97 -0.37 -0.85 16 11 C -0.13 -1.42 7.60 -25.83 -0.20 -1.62 16 12 C -0.14 -1.39 8.09 -25.83 -0.21 -1.60 16 13 C -0.13 -1.39 7.62 -25.93 -0.20 -1.58 16 14 C 0.01 0.11 11.20 -17.43 -0.20 -0.08 16 15 N -0.29 -3.95 11.90 30.59 0.36 -3.58 16 16 N -0.28 -3.71 3.69 -63.88 -0.24 -3.94 16 17 C 0.09 0.86 11.10 59.84 0.66 1.52 16 18 C 0.12 1.88 6.09 -3.48 -0.02 1.86 16 19 C -0.15 -2.35 5.79 -26.39 -0.15 -2.50 16 20 C 0.18 3.16 2.53 -67.89 -0.17 2.99 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -15.87 3.63 -53.39 -0.19 -16.07 16 23 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 27 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.39 6.99 -51.93 -0.36 1.02 16 35 H 0.08 1.43 6.64 -51.93 -0.34 1.08 16 36 H 0.09 1.36 7.93 -51.92 -0.41 0.95 16 37 H 0.08 0.81 7.27 -51.93 -0.38 0.44 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.82 7.99 -51.93 -0.41 0.40 16 43 H 0.18 1.75 7.75 -52.48 -0.41 1.34 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 48 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.13 5.92 -40.82 -0.24 8.88 16 52 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -30.22 410.05 -9.39 -39.61 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.71 Total: 10.79 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.06 Total: -3.78 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.14 Total: -59.10 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.22 -9.39 -39.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036035605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.684 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds