Wall clock time and date at job start Wed Apr 1 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.52384 * 2 1 4 4 C 1.53186 * 109.49899 * 239.91648 * 2 1 3 5 5 N 1.46929 * 108.77791 * 185.41503 * 4 2 1 6 6 C 1.34778 * 120.63059 * 233.58999 * 5 4 2 7 7 O 1.21621 * 120.00080 * 5.09982 * 6 5 4 8 8 C 1.47160 * 119.99702 * 185.11143 * 6 5 4 9 9 C 1.38407 * 126.88522 * 92.54322 * 8 6 5 10 10 C 1.50693 * 127.32296 * 359.97438 * 9 8 6 11 11 C 1.53785 * 113.61446 * 219.13805 * 10 9 8 12 12 C 1.53953 * 87.01643 * 220.04387 * 11 10 9 13 13 C 1.53771 * 113.61757 * 121.52949 * 10 9 8 14 14 C 1.39676 * 105.35556 * 180.02562 * 9 8 6 15 15 N 1.30858 * 107.86557 * 359.74027 * 14 9 8 16 16 N 1.28442 * 110.92818 * 0.43970 * 15 14 9 17 17 C 1.46493 * 125.19505 * 179.81471 * 16 15 14 18 18 C 1.46928 * 118.73748 * 53.85461 * 5 4 2 19 19 C 1.53624 * 108.54421 * 306.09706 * 18 5 4 20 20 C 1.53037 * 109.23879 * 54.85785 * 19 18 5 21 21 H 1.09000 * 109.45943 * 178.48840 * 20 19 18 22 22 N 1.46502 * 109.46446 * 58.53153 * 20 19 18 23 23 C 1.36936 * 119.99795 * 84.92400 * 22 20 19 24 24 H 1.07997 * 120.00792 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99711 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99823 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00204 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46816 * 90.00407 * 27 25 23 29 29 H 1.48496 * 109.47374 * 210.00204 * 27 25 23 30 30 H 1.48495 * 109.47154 * 330.00766 * 27 25 23 31 31 H 1.09004 * 109.46997 * 180.08473 * 1 2 3 32 32 H 1.09004 * 109.47154 * 300.08528 * 1 2 3 33 33 H 1.08999 * 109.46835 * 60.08460 * 1 2 3 34 34 H 1.09001 * 109.58756 * 65.62642 * 4 2 1 35 35 H 1.08999 * 109.58582 * 305.19904 * 4 2 1 36 36 H 1.09008 * 112.84871 * 350.32993 * 10 9 8 37 37 H 1.08999 * 113.61378 * 334.56864 * 11 10 9 38 38 H 1.09005 * 113.61151 * 105.46805 * 11 10 9 39 39 H 1.09000 * 113.53723 * 270.80365 * 12 11 10 40 40 H 1.09000 * 113.66130 * 139.93711 * 12 11 10 41 41 H 1.09003 * 113.61433 * 254.52466 * 13 10 9 42 42 H 1.08998 * 113.61880 * 25.34648 * 13 10 9 43 43 H 1.08003 * 126.06717 * 180.02562 * 14 9 8 44 44 H 1.09003 * 109.47470 * 264.67028 * 17 16 15 45 45 H 1.09005 * 109.47414 * 144.67060 * 17 16 15 46 46 H 1.08999 * 109.46921 * 24.67555 * 17 16 15 47 47 H 1.08999 * 109.58515 * 65.93423 * 18 5 4 48 48 H 1.09002 * 109.58437 * 186.35488 * 18 5 4 49 49 H 1.09000 * 109.63652 * 294.86116 * 19 18 5 50 50 H 1.09005 * 109.45377 * 174.73972 * 19 18 5 51 51 H 0.97000 * 119.99634 * 264.93302 * 22 20 19 52 52 H 0.97005 * 120.00177 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2811 -0.3864 -2.1782 7 8 3.7790 0.1893 -3.1245 8 6 5.7365 -0.6000 -2.1346 9 6 6.4365 -1.6648 -2.6748 10 6 5.8716 -2.8424 -3.4265 11 6 6.5601 -4.1757 -3.0900 12 6 6.4637 -4.5114 -4.5894 13 6 6.4386 -2.9956 -4.8476 14 6 7.7777 -1.4164 -2.3742 15 7 7.8390 -0.2877 -1.7149 16 7 6.6673 0.2128 -1.5523 17 6 6.3744 1.4670 -0.8542 18 6 4.1050 -1.4317 0.0285 19 6 3.5708 -0.6948 1.2661 20 6 2.0408 -0.7230 1.2484 21 1 1.6581 -0.2243 2.1389 22 7 1.5783 -2.1130 1.2310 23 6 1.4482 -2.8060 2.4048 24 1 1.6861 -2.3279 3.3435 25 6 1.0105 -4.1232 2.3883 26 7 0.7210 -4.7061 1.2443 27 14 0.8323 -5.0685 3.9895 28 1 -0.5398 -4.8802 4.5254 29 1 1.0728 -6.5127 3.7413 30 1 1.8220 -4.5640 4.9749 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5152 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.7638 -0.1580 -2.1388 35 1 1.6053 -1.7216 -1.2979 36 1 4.7834 -2.8897 -3.3830 37 1 7.5835 -4.0607 -2.7332 38 1 5.9605 -4.8289 -2.4560 39 1 5.5376 -5.0165 -4.8637 40 1 7.3504 -5.0071 -4.9846 41 1 5.7411 -2.6977 -5.6305 42 1 7.4282 -2.5562 -4.9727 43 1 8.6160 -2.0422 -2.6427 44 1 6.1119 1.2534 0.1820 45 1 5.5403 1.9693 -1.3442 46 1 7.2530 2.1115 -0.8811 47 1 3.8339 -2.4861 0.0822 48 1 5.1896 -1.3331 -0.0174 49 1 3.9159 0.3390 1.2542 50 1 3.9334 -1.1890 2.1675 51 1 1.3644 -2.5423 0.3879 52 1 0.4147 -5.6265 1.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036035605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:18 Heat of formation + Delta-G solvation = 58.912587 kcal Electronic energy + Delta-G solvation = -32526.621464 eV Core-core repulsion = 28528.047988 eV Total energy + Delta-G solvation = -3998.573476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.62916 -41.20676 -39.48019 -39.12083 -35.93887 -34.56749 -34.26281 -33.04801 -32.10295 -30.94821 -28.59546 -27.69313 -26.73642 -26.43623 -26.10887 -25.35568 -23.34473 -23.12031 -22.32200 -20.66221 -19.96889 -19.79603 -19.26808 -18.67842 -17.78095 -16.88708 -16.79695 -16.57356 -16.50615 -16.04961 -15.95469 -15.59231 -15.37512 -15.18074 -14.93510 -14.68013 -14.33948 -14.07613 -13.95147 -13.74208 -13.64347 -13.45290 -13.27826 -13.10079 -13.06600 -12.98396 -12.86282 -12.70482 -12.46817 -12.12554 -12.01033 -11.96434 -11.88008 -11.60058 -11.55437 -11.35442 -11.28288 -11.19408 -11.16543 -10.87529 -10.13570 -9.76591 -9.63294 -8.92636 -7.88314 -5.14385 0.60334 0.99004 1.49602 1.50506 1.57703 1.59210 1.66377 2.00732 2.59987 3.22447 3.45753 3.45974 3.71352 3.78932 3.84123 3.87826 3.94939 3.97608 4.03884 4.10623 4.20054 4.22732 4.24322 4.29627 4.33852 4.47280 4.50413 4.52986 4.57580 4.67643 4.69542 4.81052 4.86670 4.89953 4.90518 4.98992 4.99724 5.11127 5.12118 5.14230 5.16347 5.22122 5.26618 5.38954 5.44639 5.49928 5.56812 5.61375 5.61786 5.76015 6.18829 6.33456 6.82686 7.03896 7.41416 8.17131 8.40243 9.34884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.003800 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.089469 B = 7365.890951 C = 8439.967228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.091 0.909 4 C 0.122 3.878 5 N -0.581 5.581 6 C 0.595 3.405 7 O -0.565 6.565 8 C -0.041 4.041 9 C -0.147 4.147 10 C -0.050 4.050 11 C -0.126 4.126 12 C -0.133 4.133 13 C -0.122 4.122 14 C 0.010 3.990 15 N -0.293 5.293 16 N -0.274 5.274 17 C 0.077 3.923 18 C 0.131 3.869 19 C -0.139 4.139 20 C 0.173 3.827 21 H 0.053 0.947 22 N -0.724 5.724 23 C -0.226 4.226 24 H 0.075 0.925 25 C -0.070 4.070 26 N -0.968 5.968 27 Si 0.960 3.040 28 H -0.293 1.293 29 H -0.302 1.302 30 H -0.271 1.271 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.211 0.789 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.373 0.627 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 9.795 -7.252 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.109 0.891 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.381 3.619 7 O -0.444 6.444 8 C -0.169 4.169 9 C -0.158 4.158 10 C -0.069 4.069 11 C -0.163 4.163 12 C -0.170 4.170 13 C -0.159 4.159 14 C -0.167 4.167 15 N -0.124 5.124 16 N -0.063 5.063 17 C -0.062 4.062 18 C 0.009 3.991 19 C -0.180 4.180 20 C 0.064 3.936 21 H 0.071 0.929 22 N -0.365 5.365 23 C -0.359 4.359 24 H 0.093 0.907 25 C -0.262 4.262 26 N -0.619 5.619 27 Si 0.791 3.209 28 H -0.220 1.220 29 H -0.230 1.230 30 H -0.196 1.196 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.228 0.772 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.207 0.793 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.794 10.981 -6.928 18.943 hybrid contribution -1.248 -1.646 0.289 2.086 sum 12.545 9.335 -6.639 16.989 Atomic orbital electron populations 1.21602 0.93783 1.01596 1.01974 1.21632 0.96774 0.99436 0.93748 0.89060 1.21658 0.77996 1.00780 0.99591 1.48085 1.07086 1.58308 1.17640 1.17233 0.84713 0.78028 0.81961 1.90777 1.75198 1.43485 1.34904 1.21224 0.90820 0.97299 1.07603 1.20712 0.93598 0.96767 1.04746 1.20884 0.98144 0.91580 0.96340 1.23006 1.01428 0.94561 0.97338 1.22810 1.02898 0.95747 0.95574 1.22932 1.01663 0.96963 0.94385 1.23715 0.96842 0.95047 1.01118 1.73113 1.05958 1.12899 1.20428 1.45767 1.02060 1.19013 1.39421 1.22469 1.04931 0.81019 0.97762 1.21587 0.96797 0.97209 0.83539 1.22490 0.98837 1.00073 0.96569 1.20442 0.91792 0.85279 0.96040 0.92931 1.42583 1.79035 1.09295 1.05607 1.19551 1.34777 0.93843 0.87686 0.90667 1.25343 1.03576 0.98406 0.98913 1.69793 1.53808 1.12861 1.25426 0.85331 0.77621 0.77602 0.80353 1.22018 1.22966 1.19569 0.94160 0.91956 0.91569 0.89274 0.92648 0.91801 0.88121 0.92473 0.90620 0.89234 0.92198 0.88580 0.77241 0.88201 0.89183 0.86118 0.92838 0.90475 0.90209 0.91550 0.79307 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.06 71.98 0.65 -3.24 16 2 C -0.10 -2.84 2.67 -10.72 -0.03 -2.87 16 3 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 4 C 0.12 3.96 5.43 86.36 0.47 4.43 16 5 N -0.58 -18.38 2.97 -822.25 -2.44 -20.81 16 6 C 0.59 19.46 6.71 86.59 0.58 20.04 16 7 O -0.57 -21.55 16.52 -4.10 -0.07 -21.61 16 8 C -0.04 -1.20 4.69 40.78 0.19 -1.01 16 9 C -0.15 -3.97 5.49 -19.48 -0.11 -4.08 16 10 C -0.05 -1.27 4.11 -11.02 -0.05 -1.32 16 11 C -0.13 -2.66 7.60 31.18 0.24 -2.42 16 12 C -0.13 -2.42 8.09 31.18 0.25 -2.16 16 13 C -0.12 -2.50 7.62 31.12 0.24 -2.27 16 14 C 0.01 0.22 11.20 85.19 0.95 1.18 16 15 N -0.29 -7.39 11.90 -57.14 -0.68 -8.07 16 16 N -0.27 -6.87 3.69 -356.02 -1.32 -8.18 16 17 C 0.08 1.33 11.10 127.77 1.42 2.75 16 18 C 0.13 4.17 6.09 86.51 0.53 4.70 16 19 C -0.14 -4.17 5.79 30.82 0.18 -3.99 16 20 C 0.17 5.95 2.53 45.02 0.11 6.06 16 21 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 22 N -0.72 -32.46 3.63 -322.81 -1.17 -33.63 16 23 C -0.23 -11.53 9.93 84.03 0.83 -10.70 16 24 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 25 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 26 N -0.97 -56.82 13.06 21.65 0.28 -56.53 16 27 Si 0.96 44.59 29.55 68.60 2.03 46.62 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 31 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 2.87 6.99 -2.39 -0.02 2.85 16 35 H 0.06 2.08 6.64 -2.39 -0.02 2.07 16 36 H 0.06 1.98 7.93 -2.38 -0.02 1.97 16 37 H 0.10 1.75 7.27 -2.39 -0.02 1.74 16 38 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.70 7.99 -2.39 -0.02 1.68 16 43 H 0.21 3.35 7.75 -2.91 -0.02 3.33 16 44 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 45 H 0.09 1.56 7.93 -2.38 -0.02 1.54 16 46 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.05 2.10 7.74 -2.39 -0.02 2.08 16 48 H 0.08 2.29 6.33 -2.39 -0.02 2.27 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 51 H 0.37 18.44 5.92 -92.71 -0.55 17.89 16 52 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -66.34 410.05 3.93 -62.41 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.36 Total: 38.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.93 Total: 1.76 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.32 Total: -127.22 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.34 3.93 -62.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036035605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.319 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds