Wall clock time and date at job start Wed Apr 1 2020 04:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.50159 * 2 1 4 4 C 1.53191 * 109.49485 * 239.94118 * 2 1 3 5 5 N 1.46927 * 108.77826 * 185.38298 * 4 2 1 6 6 C 1.34772 * 120.63168 * 233.58804 * 5 4 2 7 7 O 1.21288 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00285 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47116 * 179.97438 * 8 6 5 10 10 C 1.34854 * 125.96199 * 125.00009 * 9 8 6 11 11 N 1.36311 * 106.68913 * 180.02562 * 10 9 8 12 12 C 1.35424 * 107.39818 * 0.04290 * 11 10 9 13 13 N 1.30093 * 108.62856 * 359.94422 * 12 11 10 14 14 C 1.51038 * 123.98064 * 179.89437 * 12 11 10 15 15 C 1.53399 * 108.21589 * 344.06929 * 14 12 11 16 16 C 1.53158 * 109.23824 * 48.81291 * 15 14 12 17 17 C 1.46477 * 127.77608 * 180.09326 * 11 10 9 18 18 C 1.46926 * 118.73883 * 53.85567 * 5 4 2 19 19 C 1.53623 * 108.54376 * 306.09757 * 18 5 4 20 20 C 1.53040 * 109.52657 * 120.08880 * 2 1 3 21 21 H 1.09003 * 109.45468 * 301.33729 * 20 2 1 22 22 N 1.46500 * 109.46073 * 61.30911 * 20 2 1 23 23 C 1.36941 * 119.99817 * 205.00283 * 22 20 2 24 24 H 1.07999 * 119.99802 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00049 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99835 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00040 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47260 * 0.02562 * 27 25 23 29 29 H 1.48510 * 109.47155 * 119.99584 * 27 25 23 30 30 H 1.48496 * 109.47179 * 239.99744 * 27 25 23 31 31 H 1.09007 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46982 * 300.05606 * 1 2 3 33 33 H 1.08998 * 109.47436 * 60.06008 * 1 2 3 34 34 H 1.09002 * 109.58971 * 65.59330 * 4 2 1 35 35 H 1.09007 * 109.58862 * 305.16681 * 4 2 1 36 36 H 1.09003 * 109.47015 * 59.99704 * 8 6 5 37 37 H 1.09006 * 109.47074 * 299.99933 * 8 6 5 38 38 H 1.08007 * 126.65857 * 359.75775 * 10 9 8 39 39 H 1.09005 * 109.71230 * 103.75117 * 14 12 11 40 40 H 1.08993 * 109.71826 * 224.38938 * 14 12 11 41 41 H 1.09000 * 109.50840 * 288.88878 * 15 14 12 42 42 H 1.08995 * 109.55342 * 168.75907 * 15 14 12 43 43 H 1.08993 * 109.46801 * 170.50796 * 16 15 14 44 44 H 1.08998 * 109.46137 * 50.51930 * 16 15 14 45 45 H 1.09007 * 109.57998 * 282.62134 * 17 11 10 46 46 H 1.08994 * 109.58763 * 43.03699 * 17 11 10 47 47 H 1.08992 * 109.58869 * 65.92792 * 18 5 4 48 48 H 1.09000 * 109.58791 * 186.36104 * 18 5 4 49 49 H 1.09000 * 109.63823 * 294.86571 * 19 18 5 50 50 H 1.09001 * 109.43628 * 174.72179 * 19 18 5 51 51 H 0.96997 * 120.00018 * 25.00304 * 22 20 2 52 52 H 0.97002 * 119.99707 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5046 -0.8281 -1.1704 6 6 4.2806 -0.3849 -2.1792 7 8 3.7720 0.1058 -3.1650 8 6 5.7802 -0.4988 -2.0825 9 6 6.4083 0.0643 -3.3313 10 6 7.3436 1.0346 -3.3790 11 7 7.6300 1.2378 -4.6961 12 6 6.8601 0.3858 -5.4140 13 7 6.1337 -0.3120 -4.5908 14 6 6.8775 0.2988 -6.9218 15 6 7.5662 1.5565 -7.4668 16 6 8.8831 1.7761 -6.7162 17 6 8.5853 2.1881 -5.2704 18 6 4.1057 -1.4307 0.0272 19 6 3.5716 -0.6944 1.2652 20 6 2.0415 -0.7231 1.2480 21 1 1.6591 -0.2247 2.1388 22 7 1.5796 -2.1133 1.2303 23 6 1.4501 -2.8067 2.4041 24 1 1.6888 -2.3288 3.3427 25 6 1.0130 -4.1241 2.3874 26 7 0.7225 -4.7066 1.2434 27 14 0.8370 -5.0702 3.9884 28 1 1.2227 -4.1958 5.1250 29 1 -0.5736 -5.5038 4.1546 30 1 1.7212 -6.2628 3.9584 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8895 33 1 -0.3634 0.5129 -0.8905 34 1 1.7632 -0.1574 -2.1390 35 1 1.6056 -1.7214 -1.2984 36 1 6.0588 -1.5473 -1.9770 37 1 6.1318 0.0596 -1.2149 38 1 7.7780 1.5535 -2.5372 39 1 7.4308 -0.5874 -7.2326 40 1 5.8562 0.2463 -7.2989 41 1 6.9163 2.4194 -7.3215 42 1 7.7702 1.4291 -8.5299 43 1 9.4546 2.5632 -7.2079 44 1 9.4610 0.8519 -6.7188 45 1 8.1564 3.1902 -5.2571 46 1 9.5074 2.1755 -4.6895 47 1 3.8349 -2.4851 0.0809 48 1 5.1902 -1.3316 -0.0189 49 1 3.9161 0.3397 1.2534 50 1 3.9346 -1.1890 2.1661 51 1 1.3656 -2.5426 0.3873 52 1 0.4167 -5.6271 1.2317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036042473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:59 Heat of formation + Delta-G solvation = 29.258817 kcal Electronic energy + Delta-G solvation = -31004.202459 eV Core-core repulsion = 27004.343099 eV Total energy + Delta-G solvation = -3999.859360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37422 -39.75966 -37.61379 -36.79096 -34.10205 -33.39090 -32.87423 -31.70560 -31.23522 -29.15547 -29.04894 -27.80808 -25.90358 -24.75812 -23.97685 -23.38369 -22.49108 -21.54792 -20.75321 -19.35604 -19.09170 -17.97321 -17.30872 -16.98203 -16.70101 -15.99604 -15.45075 -15.24838 -14.70065 -14.55499 -14.43720 -14.33638 -14.15295 -13.88592 -13.82187 -13.80575 -13.29096 -13.19528 -12.85718 -12.57263 -12.41325 -12.19106 -12.09842 -11.82099 -11.56433 -11.45253 -11.40385 -11.33866 -11.25712 -11.09894 -10.88662 -10.72307 -10.40803 -10.35244 -10.11660 -9.81687 -9.75682 -9.50600 -9.48991 -9.26835 -8.88741 -8.20991 -8.01201 -6.92419 -5.74773 -3.02957 1.98772 2.64185 3.06990 3.14236 3.43821 3.49754 3.51954 3.59652 4.02919 4.16956 4.23621 4.31017 4.60910 4.71929 4.84901 4.91283 4.97907 5.02094 5.05674 5.22408 5.29069 5.32851 5.37649 5.43025 5.44297 5.47474 5.55937 5.61831 5.65553 5.68102 5.73603 5.82582 5.90545 5.91861 6.04269 6.17628 6.20141 6.26883 6.36111 6.39673 6.51812 6.58765 6.70167 6.76558 6.78318 6.86513 7.02322 7.13628 7.15373 7.72740 7.94671 8.20885 8.43805 8.69768 9.55301 10.13191 10.48285 11.47693 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.002160 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.245750 B =12962.762940 C =13204.617853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.063 0.937 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.516 3.484 7 O -0.535 6.535 8 C -0.053 4.053 9 C 0.024 3.976 10 C -0.054 4.054 11 N -0.460 5.460 12 C 0.204 3.796 13 N -0.456 5.456 14 C -0.033 4.033 15 C -0.125 4.125 16 C -0.134 4.134 17 C 0.105 3.895 18 C 0.114 3.886 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.719 5.719 23 C -0.235 4.235 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.965 15.549 -13.684 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.001 4.001 5 N -0.340 5.340 6 C 0.304 3.696 7 O -0.411 6.411 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.186 4.186 11 N -0.144 5.144 12 C -0.059 4.059 13 N -0.174 5.174 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.172 4.172 17 C -0.018 4.018 18 C -0.008 4.008 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.220 0.780 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.220 15.249 -14.298 27.084 hybrid contribution 0.493 -0.130 1.210 1.313 sum 17.713 15.120 -13.088 26.715 Atomic orbital electron populations 1.21666 0.94417 1.03129 1.00286 1.21692 0.96337 0.98774 0.95955 0.91811 1.21565 0.78972 1.01269 0.98250 1.48112 1.06947 1.60498 1.18454 1.20312 0.88762 0.78040 0.82528 1.90676 1.75178 1.44610 1.30644 1.19907 0.92443 1.02950 0.94111 1.20005 0.98891 0.98935 0.92758 1.22164 1.05575 1.04776 0.86121 1.45272 1.32272 1.30578 1.06254 1.23255 0.93946 0.92804 0.95892 1.69962 1.21898 1.25482 1.00031 1.20157 1.03116 0.98690 0.85199 1.21676 0.96092 0.98244 1.00327 1.21892 0.98632 1.03195 0.93490 1.21927 0.92350 0.92273 0.95237 1.21792 0.96271 0.98912 0.83864 1.22591 1.00428 0.98509 0.97502 1.20211 0.90861 0.87324 0.94787 0.93300 1.42493 1.78954 1.07713 1.06949 1.19262 1.36961 0.93815 0.86612 0.91240 1.24710 1.02442 0.97221 0.96549 1.69666 1.51804 1.12961 1.23556 0.86172 0.77243 0.79985 0.83090 1.20684 1.22048 1.22025 0.91066 0.92937 0.93855 0.90042 0.90950 0.88007 0.88125 0.81025 0.89479 0.88689 0.91137 0.90026 0.89425 0.90612 0.90006 0.89408 0.89819 0.91285 0.93375 0.90911 0.78044 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.06 37.16 0.34 -1.98 16 2 C -0.11 -1.85 2.67 -90.50 -0.24 -2.09 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.23 5.42 -3.71 -0.02 2.21 16 5 N -0.61 -10.50 2.97 -172.50 -0.51 -11.01 16 6 C 0.52 9.14 7.69 -10.99 -0.08 9.05 16 7 O -0.53 -11.39 14.98 5.55 0.08 -11.31 16 8 C -0.05 -0.74 4.61 -29.03 -0.13 -0.87 16 9 C 0.02 0.36 5.87 -82.72 -0.49 -0.13 16 10 C -0.05 -0.64 11.53 -16.76 -0.19 -0.83 16 11 N -0.46 -4.97 3.13 -113.75 -0.36 -5.32 16 12 C 0.20 2.66 7.65 -155.24 -1.19 1.47 16 13 N -0.46 -7.66 10.62 -6.88 -0.07 -7.74 16 14 C -0.03 -0.29 6.33 -27.51 -0.17 -0.47 16 15 C -0.13 -0.72 5.96 -26.44 -0.16 -0.88 16 16 C -0.13 -0.63 5.94 -26.51 -0.16 -0.79 16 17 C 0.10 0.65 6.98 -3.92 -0.03 0.62 16 18 C 0.11 1.85 6.11 -3.49 -0.02 1.83 16 19 C -0.15 -2.48 5.80 -26.39 -0.15 -2.63 16 20 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.81 3.64 -53.38 -0.19 -17.01 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 27 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H 0.07 1.38 7.54 -51.92 -0.39 0.99 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.53 7.01 -51.93 -0.36 1.17 16 35 H 0.07 1.46 6.64 -51.92 -0.34 1.12 16 36 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 37 H 0.10 1.08 7.67 -51.93 -0.40 0.69 16 38 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 1.61 7.73 -51.93 -0.40 1.21 16 48 H 0.07 0.90 5.93 -51.93 -0.31 0.59 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 51 H 0.38 9.72 5.92 -40.82 -0.24 9.48 16 52 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -35.04 403.28 -11.14 -46.18 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.74 Total: 8.96 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.12 Total: 0.93 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -0.41 Total: -67.81 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.04 -11.14 -46.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036042473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.434 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds