Wall clock time and date at job start Wed Apr 1 2020 04:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.50159 * 2 1 4 4 C 1.53191 * 109.49485 * 239.94118 * 2 1 3 5 5 N 1.46927 * 108.77826 * 185.38298 * 4 2 1 6 6 C 1.34772 * 120.63168 * 233.58804 * 5 4 2 7 7 O 1.21288 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00285 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47116 * 179.97438 * 8 6 5 10 10 C 1.34854 * 125.96199 * 125.00009 * 9 8 6 11 11 N 1.36311 * 106.68913 * 180.02562 * 10 9 8 12 12 C 1.35424 * 107.39818 * 0.04290 * 11 10 9 13 13 N 1.30093 * 108.62856 * 359.94422 * 12 11 10 14 14 C 1.51038 * 123.98064 * 179.89437 * 12 11 10 15 15 C 1.53399 * 108.21589 * 344.06929 * 14 12 11 16 16 C 1.53158 * 109.23824 * 48.81291 * 15 14 12 17 17 C 1.46477 * 127.77608 * 180.09326 * 11 10 9 18 18 C 1.46926 * 118.73883 * 53.85567 * 5 4 2 19 19 C 1.53623 * 108.54376 * 306.09757 * 18 5 4 20 20 C 1.53040 * 109.52657 * 120.08880 * 2 1 3 21 21 H 1.09003 * 109.45468 * 301.33729 * 20 2 1 22 22 N 1.46500 * 109.46073 * 61.30911 * 20 2 1 23 23 C 1.36941 * 119.99817 * 205.00283 * 22 20 2 24 24 H 1.07999 * 119.99802 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00049 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99835 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00040 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47260 * 0.02562 * 27 25 23 29 29 H 1.48510 * 109.47155 * 119.99584 * 27 25 23 30 30 H 1.48496 * 109.47179 * 239.99744 * 27 25 23 31 31 H 1.09007 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46982 * 300.05606 * 1 2 3 33 33 H 1.08998 * 109.47436 * 60.06008 * 1 2 3 34 34 H 1.09002 * 109.58971 * 65.59330 * 4 2 1 35 35 H 1.09007 * 109.58862 * 305.16681 * 4 2 1 36 36 H 1.09003 * 109.47015 * 59.99704 * 8 6 5 37 37 H 1.09006 * 109.47074 * 299.99933 * 8 6 5 38 38 H 1.08007 * 126.65857 * 359.75775 * 10 9 8 39 39 H 1.09005 * 109.71230 * 103.75117 * 14 12 11 40 40 H 1.08993 * 109.71826 * 224.38938 * 14 12 11 41 41 H 1.09000 * 109.50840 * 288.88878 * 15 14 12 42 42 H 1.08995 * 109.55342 * 168.75907 * 15 14 12 43 43 H 1.08993 * 109.46801 * 170.50796 * 16 15 14 44 44 H 1.08998 * 109.46137 * 50.51930 * 16 15 14 45 45 H 1.09007 * 109.57998 * 282.62134 * 17 11 10 46 46 H 1.08994 * 109.58763 * 43.03699 * 17 11 10 47 47 H 1.08992 * 109.58869 * 65.92792 * 18 5 4 48 48 H 1.09000 * 109.58791 * 186.36104 * 18 5 4 49 49 H 1.09000 * 109.63823 * 294.86571 * 19 18 5 50 50 H 1.09001 * 109.43628 * 174.72179 * 19 18 5 51 51 H 0.96997 * 120.00018 * 25.00304 * 22 20 2 52 52 H 0.97002 * 119.99707 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5046 -0.8281 -1.1704 6 6 4.2806 -0.3849 -2.1792 7 8 3.7720 0.1058 -3.1650 8 6 5.7802 -0.4988 -2.0825 9 6 6.4083 0.0643 -3.3313 10 6 7.3436 1.0346 -3.3790 11 7 7.6300 1.2378 -4.6961 12 6 6.8601 0.3858 -5.4140 13 7 6.1337 -0.3120 -4.5908 14 6 6.8775 0.2988 -6.9218 15 6 7.5662 1.5565 -7.4668 16 6 8.8831 1.7761 -6.7162 17 6 8.5853 2.1881 -5.2704 18 6 4.1057 -1.4307 0.0272 19 6 3.5716 -0.6944 1.2652 20 6 2.0415 -0.7231 1.2480 21 1 1.6591 -0.2247 2.1388 22 7 1.5796 -2.1133 1.2303 23 6 1.4501 -2.8067 2.4041 24 1 1.6888 -2.3288 3.3427 25 6 1.0130 -4.1241 2.3874 26 7 0.7225 -4.7066 1.2434 27 14 0.8370 -5.0702 3.9884 28 1 1.2227 -4.1958 5.1250 29 1 -0.5736 -5.5038 4.1546 30 1 1.7212 -6.2628 3.9584 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8895 33 1 -0.3634 0.5129 -0.8905 34 1 1.7632 -0.1574 -2.1390 35 1 1.6056 -1.7214 -1.2984 36 1 6.0588 -1.5473 -1.9770 37 1 6.1318 0.0596 -1.2149 38 1 7.7780 1.5535 -2.5372 39 1 7.4308 -0.5874 -7.2326 40 1 5.8562 0.2463 -7.2989 41 1 6.9163 2.4194 -7.3215 42 1 7.7702 1.4291 -8.5299 43 1 9.4546 2.5632 -7.2079 44 1 9.4610 0.8519 -6.7188 45 1 8.1564 3.1902 -5.2571 46 1 9.5074 2.1755 -4.6895 47 1 3.8349 -2.4851 0.0809 48 1 5.1902 -1.3316 -0.0189 49 1 3.9161 0.3397 1.2534 50 1 3.9346 -1.1890 2.1661 51 1 1.3656 -2.5426 0.3873 52 1 0.4167 -5.6271 1.2317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036042473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:58 Heat of formation + Delta-G solvation = 8.347665 kcal Electronic energy + Delta-G solvation = -31005.109235 eV Core-core repulsion = 27004.343099 eV Total energy + Delta-G solvation = -4000.766136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.22753 -41.17411 -39.04032 -37.47570 -35.77837 -34.52450 -34.12499 -33.02918 -32.56472 -30.85181 -29.86834 -28.76376 -27.27249 -26.22875 -25.23902 -24.69455 -23.11334 -23.00000 -21.82962 -20.49433 -19.96648 -19.44556 -19.18464 -18.03314 -17.73570 -16.85412 -16.70978 -16.62672 -16.26826 -15.84491 -15.53504 -15.36192 -15.12928 -15.07587 -14.83637 -14.64687 -14.52200 -14.44766 -14.29479 -14.04669 -13.57847 -13.46193 -13.18045 -12.95807 -12.87719 -12.80430 -12.62917 -12.60989 -12.35988 -12.04535 -12.03261 -11.94060 -11.92757 -11.86125 -11.84183 -11.54715 -11.12412 -10.90179 -10.79137 -10.61960 -10.36590 -9.49640 -9.11274 -8.89296 -7.86178 -5.12450 1.12711 1.50088 1.51010 1.60073 1.76789 1.91157 2.01986 2.35852 2.61684 3.36907 3.47771 3.63108 3.67490 3.77234 3.81840 3.91361 3.95991 4.10559 4.13478 4.15316 4.19644 4.34235 4.37265 4.41210 4.43860 4.45937 4.55211 4.58439 4.64038 4.70853 4.75206 4.83097 4.84838 4.88893 4.97067 4.99808 5.00321 5.08728 5.10867 5.15731 5.28252 5.28319 5.32712 5.36577 5.44156 5.50261 5.63314 5.71544 5.85202 6.35525 6.36706 6.58513 7.30019 7.32456 7.42525 8.19879 8.42956 9.37536 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.002160 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.245750 B =12962.762940 C =13204.617853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.512 3.488 7 O -0.576 6.576 8 C -0.045 4.045 9 C -0.021 4.021 10 C -0.039 4.039 11 N -0.456 5.456 12 C 0.187 3.813 13 N -0.518 5.518 14 C -0.036 4.036 15 C -0.119 4.119 16 C -0.129 4.129 17 C 0.095 3.905 18 C 0.119 3.881 19 C -0.140 4.140 20 C 0.171 3.829 21 H 0.049 0.951 22 N -0.726 5.726 23 C -0.222 4.222 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.965 3.035 28 H -0.264 1.264 29 H -0.302 1.302 30 H -0.299 1.299 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.209 0.791 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.047 0.953 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.372 0.628 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.066 18.426 -12.999 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.104 0.896 4 C 0.004 3.996 5 N -0.339 5.339 6 C 0.302 3.698 7 O -0.456 6.456 8 C -0.085 4.085 9 C -0.150 4.150 10 C -0.174 4.174 11 N -0.139 5.139 12 C -0.076 4.076 13 N -0.237 5.237 14 C -0.075 4.075 15 C -0.157 4.157 16 C -0.167 4.167 17 C -0.026 4.026 18 C -0.003 4.003 19 C -0.181 4.181 20 C 0.062 3.938 21 H 0.067 0.933 22 N -0.367 5.367 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.796 3.204 28 H -0.189 1.189 29 H -0.230 1.230 30 H -0.227 1.227 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.226 0.774 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.066 0.934 48 H 0.127 0.873 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.205 0.795 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.369 18.187 -13.588 30.501 hybrid contribution -0.459 -0.924 0.926 1.386 sum 19.910 17.264 -12.661 29.236 Atomic orbital electron populations 1.21605 0.94350 1.01368 1.01648 1.21605 0.96356 0.99264 0.94336 0.89647 1.21371 0.80111 0.99581 0.98561 1.48187 1.06395 1.60323 1.18955 1.21077 0.90445 0.76820 0.81491 1.90651 1.76267 1.46531 1.32125 1.19946 0.89072 1.03871 0.95625 1.20317 1.01040 1.01125 0.92519 1.22689 1.03994 1.03205 0.87467 1.45584 1.32086 1.30316 1.05884 1.23801 0.93823 0.92827 0.97135 1.69869 1.24233 1.27902 1.01653 1.20317 1.02907 1.00957 0.83317 1.21671 0.96327 0.96041 1.01664 1.21921 0.97995 1.04185 0.92567 1.22351 0.92281 0.91653 0.96307 1.21788 0.98532 0.96676 0.83318 1.22461 0.97914 1.00395 0.97290 1.20471 0.92746 0.85028 0.95536 0.93309 1.42630 1.79114 1.09333 1.05590 1.19632 1.34273 0.93744 0.87725 0.90413 1.25428 1.03840 0.98560 0.99155 1.69832 1.54130 1.12778 1.25569 0.85180 0.76281 0.78588 0.80367 1.18876 1.22987 1.22672 0.94310 0.91952 0.92103 0.90891 0.93911 0.87673 0.84328 0.77385 0.88756 0.90225 0.91788 0.87792 0.86370 0.90801 0.88881 0.87083 0.93435 0.87251 0.90165 0.91233 0.79492 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.06 71.98 0.65 -3.79 16 2 C -0.10 -3.23 2.67 -10.72 -0.03 -3.26 16 3 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.13 4.76 5.42 86.36 0.47 5.22 16 5 N -0.61 -20.83 2.97 -818.06 -2.43 -23.26 16 6 C 0.51 18.05 7.69 87.66 0.67 18.72 16 7 O -0.58 -25.22 14.98 -3.05 -0.05 -25.26 16 8 C -0.04 -1.18 4.61 29.10 0.13 -1.05 16 9 C -0.02 -0.61 5.87 41.41 0.24 -0.37 16 10 C -0.04 -0.84 11.53 83.22 0.96 0.12 16 11 N -0.46 -8.97 3.13 -513.80 -1.61 -10.58 16 12 C 0.19 4.87 7.65 138.23 1.06 5.93 16 13 N -0.52 -17.83 10.62 -175.69 -1.86 -19.70 16 14 C -0.04 -0.65 6.33 30.09 0.19 -0.46 16 15 C -0.12 -1.14 5.96 30.78 0.18 -0.96 16 16 C -0.13 -0.79 5.94 30.74 0.18 -0.61 16 17 C 0.09 0.86 6.98 86.47 0.60 1.46 16 18 C 0.12 3.72 6.11 86.51 0.53 4.25 16 19 C -0.14 -4.32 5.80 30.82 0.18 -4.14 16 20 C 0.17 6.33 2.53 45.02 0.11 6.44 16 21 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 22 N -0.73 -34.46 3.64 -322.80 -1.17 -35.63 16 23 C -0.22 -11.70 9.93 84.03 0.83 -10.86 16 24 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 25 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 26 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 27 Si 0.96 45.86 29.55 68.60 2.03 47.89 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 30 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 31 H 0.04 1.55 7.54 -2.38 -0.02 1.53 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.84 7.01 -2.39 -0.02 2.83 16 35 H 0.04 1.85 6.64 -2.38 -0.02 1.83 16 36 H 0.11 2.65 7.93 -2.39 -0.02 2.63 16 37 H 0.14 2.46 7.67 -2.38 -0.02 2.45 16 38 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 45 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.05 1.86 7.73 -2.39 -0.02 1.84 16 48 H 0.11 2.53 5.93 -2.39 -0.01 2.52 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.37 19.63 5.92 -92.71 -0.55 19.08 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -80.97 403.28 2.99 -77.98 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.36 Total: 34.89 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 7.44 Total: 12.73 kcal Atomic # 7 Polarization: -141.43 SS G_CDS: -6.79 Total: -148.22 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -80.97 2.99 -77.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036042473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.325 kcal (2) G-P(sol) polarization free energy of solvation -80.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds