Wall clock time and date at job start Wed Apr 1 2020 04:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52487 * 2 1 4 4 C 1.52760 * 109.56730 * 240.04649 * 2 1 3 5 5 N 1.46917 * 109.01431 * 185.55247 * 4 2 1 6 6 C 1.34780 * 120.63693 * 233.59013 * 5 4 2 7 7 O 1.21633 * 119.99501 * 5.12470 * 6 5 4 8 8 C 1.47155 * 120.00378 * 185.13303 * 6 5 4 9 9 C 1.37195 * 127.04657 * 267.91203 * 8 6 5 10 10 C 1.40089 * 105.88280 * 179.97438 * 9 8 6 11 11 N 1.30103 * 107.72973 * 359.66524 * 10 9 8 12 12 N 1.28833 * 110.77873 * 0.53781 * 11 10 9 13 13 C 1.46496 * 125.15222 * 179.73789 * 12 11 10 14 14 C 1.50867 * 123.21064 * 179.81835 * 10 9 8 15 15 C 1.53396 * 108.18615 * 343.21566 * 14 10 9 16 16 C 1.53023 * 109.88526 * 50.74851 * 15 14 10 17 17 C 1.50388 * 129.90970 * 0.11049 * 9 8 6 18 18 C 1.46934 * 118.73843 * 53.30510 * 5 4 2 19 19 C 1.53185 * 108.77453 * 306.65195 * 18 5 4 20 20 C 1.53039 * 109.31601 * 54.63116 * 19 18 5 21 21 H 1.08998 * 109.46074 * 58.64264 * 20 19 18 22 22 N 1.46504 * 109.46037 * 178.61214 * 20 19 18 23 23 C 1.36927 * 120.00317 * 274.99711 * 22 20 19 24 24 H 1.08000 * 120.00416 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00047 * 179.97438 * 23 22 20 26 26 N 1.31630 * 119.99634 * 180.02562 * 25 23 22 27 27 Si 1.86789 * 120.00253 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47068 * 89.99796 * 27 25 23 29 29 H 1.48503 * 109.47864 * 209.99947 * 27 25 23 30 30 H 1.48504 * 109.47210 * 330.00183 * 27 25 23 31 31 H 1.08994 * 109.47462 * 299.91700 * 1 2 3 32 32 H 1.09002 * 109.46960 * 59.92202 * 1 2 3 33 33 H 1.09001 * 109.47054 * 179.91509 * 1 2 3 34 34 H 1.09008 * 109.50969 * 65.66671 * 4 2 1 35 35 H 1.09006 * 109.43445 * 305.39572 * 4 2 1 36 36 H 1.09001 * 109.47038 * 264.58094 * 13 12 11 37 37 H 1.09007 * 109.47108 * 24.57591 * 13 12 11 38 38 H 1.08993 * 109.47169 * 144.57814 * 13 12 11 39 39 H 1.09004 * 109.71978 * 223.53955 * 14 10 9 40 40 H 1.09003 * 109.71901 * 102.89116 * 14 10 9 41 41 H 1.08999 * 109.40372 * 290.61889 * 15 14 10 42 42 H 1.09005 * 109.40196 * 170.87680 * 15 14 10 43 43 H 1.08997 * 109.43485 * 168.52046 * 16 15 14 44 44 H 1.08997 * 109.43610 * 48.64918 * 16 15 14 45 45 H 1.08998 * 109.73333 * 283.24322 * 17 9 8 46 46 H 1.08993 * 109.73142 * 43.93220 * 17 9 8 47 47 H 1.09006 * 109.57917 * 66.43130 * 18 5 4 48 48 H 1.08997 * 109.58724 * 186.71336 * 18 5 4 49 49 H 1.09002 * 109.49886 * 174.58069 * 19 18 5 50 50 H 1.09001 * 109.49989 * 294.64175 * 19 18 5 51 51 H 0.97010 * 119.99581 * 95.00127 * 22 20 19 52 52 H 0.96999 * 119.99272 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1696 6 6 4.2812 -0.3855 -2.1779 7 8 3.7797 0.1956 -3.1214 8 6 5.7359 -0.6044 -2.1374 9 6 6.6858 0.2457 -1.6303 10 6 7.9157 -0.3983 -1.8175 11 7 7.6804 -1.5440 -2.3872 12 7 6.4188 -1.6994 -2.5972 13 6 5.8067 -2.8722 -3.2266 14 6 9.2350 0.2019 -1.3984 15 6 9.0256 1.7037 -1.1668 16 6 7.8273 1.9256 -0.2414 17 6 6.5279 1.5971 -0.9896 18 6 4.1054 -1.4267 0.0308 19 6 3.5709 -0.6951 1.2659 20 6 2.0408 -0.7231 1.2483 21 1 1.6967 -1.7573 1.2350 22 7 1.5265 -0.0531 2.4453 23 6 1.3950 -0.7497 3.6168 24 1 1.6709 -1.7930 3.6586 25 6 0.9082 -0.1145 4.7511 26 7 0.7823 -0.7841 5.8773 27 14 0.4318 1.6901 4.6792 28 1 -0.9993 1.8096 4.3009 29 1 0.6454 2.3121 6.0106 30 1 1.2704 2.3836 3.6686 31 1 -0.3634 0.5125 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7646 -0.1496 -2.1346 35 1 1.6021 -1.7149 -1.2976 36 1 5.6657 -2.6814 -4.2905 37 1 6.4582 -3.7363 -3.0957 38 1 4.8411 -3.0714 -2.7620 39 1 9.9743 0.0505 -2.1850 40 1 9.5766 -0.2684 -0.4764 41 1 8.8414 2.1952 -2.1221 42 1 9.9197 2.1276 -0.7095 43 1 7.8065 2.9663 0.0818 44 1 7.9173 1.2775 0.6303 45 1 6.3453 2.3492 -1.7572 46 1 5.6942 1.5765 -0.2879 47 1 3.8375 -2.4818 0.0867 48 1 5.1898 -1.3269 -0.0150 49 1 3.9334 -1.1897 2.1671 50 1 3.9164 0.3387 1.2544 51 1 1.2791 0.8842 2.4079 52 1 0.4425 -0.3402 6.6700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036049851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:57 Heat of formation + Delta-G solvation = 44.889036 kcal Electronic energy + Delta-G solvation = -32197.198597 eV Core-core repulsion = 28198.017013 eV Total energy + Delta-G solvation = -3999.181583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.81874 -40.05300 -37.82126 -37.20073 -34.84765 -33.19462 -32.80147 -32.02168 -31.62671 -29.98364 -29.37057 -27.53101 -26.63318 -25.32653 -23.65639 -23.03168 -22.32919 -21.99803 -21.52333 -19.97382 -19.34254 -18.91752 -17.73011 -17.40902 -16.74480 -15.97783 -15.89636 -15.26644 -15.09386 -14.77828 -14.54502 -14.32699 -14.01822 -13.85097 -13.81477 -13.40938 -13.28164 -13.16759 -13.08362 -12.96342 -12.67153 -12.57919 -12.45918 -11.99752 -11.98192 -11.86501 -11.51315 -11.41369 -11.09106 -11.02695 -10.96247 -10.94964 -10.77732 -10.59961 -10.34437 -10.29729 -10.15505 -9.84028 -9.63086 -9.10235 -8.97035 -8.72422 -8.68237 -7.32685 -5.82372 -3.18090 1.56760 1.93876 2.48630 2.58104 2.97452 3.33445 3.36550 3.42110 4.07837 4.22099 4.54282 4.63549 4.71564 4.73168 4.81877 4.89625 4.93130 4.97328 5.08447 5.09236 5.14779 5.17458 5.32461 5.37000 5.38172 5.41865 5.45925 5.48534 5.54585 5.59301 5.72451 5.75694 5.76858 5.86606 5.88627 5.94742 5.96309 6.03628 6.09616 6.17937 6.19175 6.21840 6.29933 6.42064 6.45791 6.61318 6.64565 6.69747 6.87398 7.22478 7.91120 7.92708 7.95624 8.36672 9.14646 9.87434 10.07162 11.35874 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.003326 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.451008 B = 8416.707719 C = 9447.651009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.593 3.407 7 O -0.530 6.530 8 C -0.012 4.012 9 C -0.155 4.155 10 C 0.036 3.964 11 N -0.278 5.278 12 N -0.285 5.285 13 C 0.091 3.909 14 C -0.030 4.030 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.048 4.048 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.744 5.744 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.361 0.639 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 -0.126 -17.908 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.325 5.325 6 C 0.377 3.623 7 O -0.405 6.405 8 C -0.139 4.139 9 C -0.166 4.166 10 C -0.125 4.125 11 N -0.107 5.107 12 N -0.073 5.073 13 C -0.049 4.049 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.086 4.086 18 C -0.016 4.016 19 C -0.190 4.190 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.311 -1.131 -18.699 22.980 hybrid contribution -0.774 1.795 0.452 2.007 sum 12.537 0.664 -18.247 22.149 Atomic orbital electron populations 1.21665 0.93912 1.02216 1.01678 1.21718 0.96723 1.00213 0.94806 0.91153 1.21695 0.77679 1.01264 0.99555 1.48164 1.07187 1.59222 1.17970 1.17069 0.83756 0.78900 0.82567 1.90818 1.74004 1.41108 1.34562 1.20786 0.93494 0.91816 1.07821 1.20313 0.91364 0.98872 1.06010 1.21841 0.96467 0.91667 1.02501 1.72795 0.97605 1.20798 1.19542 1.45627 1.02980 1.14568 1.44154 1.22111 0.98921 0.85297 0.98586 1.19998 0.90764 0.94690 1.01461 1.21568 0.98530 0.94945 1.00366 1.21571 0.93641 1.01821 0.98368 1.20014 0.98516 0.91384 0.98659 1.21896 0.97999 0.97319 0.84336 1.22636 0.99853 1.00519 0.96027 1.20164 0.90412 0.96038 0.85441 0.92474 1.42762 1.78154 1.10064 1.07615 1.19036 1.36480 0.95680 0.86126 0.89231 1.24651 1.01281 0.97382 0.95591 1.69701 1.51997 1.35705 1.00652 0.86600 0.78588 0.86766 0.76856 1.21054 1.21767 1.20344 0.91348 0.93464 0.92493 0.89039 0.90956 0.89859 0.88152 0.89267 0.90331 0.90079 0.91616 0.91012 0.91223 0.91347 0.90719 0.90714 0.91272 0.90368 0.89955 0.92128 0.80585 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.03 37.16 0.34 -1.62 16 2 C -0.11 -1.69 2.44 -90.72 -0.22 -1.91 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.56 5.70 -3.94 -0.02 1.54 16 5 N -0.59 -7.87 2.98 -174.40 -0.52 -8.39 16 6 C 0.59 8.62 7.01 -12.64 -0.09 8.53 16 7 O -0.53 -9.18 16.52 5.25 0.09 -9.10 16 8 C -0.01 -0.17 4.75 -82.32 -0.39 -0.56 16 9 C -0.15 -2.02 5.81 -104.46 -0.61 -2.63 16 10 C 0.04 0.44 7.13 -82.55 -0.59 -0.15 16 11 N -0.28 -3.64 11.89 33.65 0.40 -3.24 16 12 N -0.29 -3.53 3.77 -64.11 -0.24 -3.77 16 13 C 0.09 0.77 11.11 59.84 0.67 1.43 16 14 C -0.03 -0.28 6.31 -27.60 -0.17 -0.45 16 15 C -0.12 -0.93 5.85 -26.51 -0.16 -1.09 16 16 C -0.12 -1.07 5.88 -26.46 -0.16 -1.23 16 17 C -0.05 -0.55 6.22 -27.78 -0.17 -0.72 16 18 C 0.11 1.39 6.32 -3.71 -0.02 1.37 16 19 C -0.15 -2.35 5.66 -26.62 -0.15 -2.51 16 20 C 0.19 3.29 2.20 -67.89 -0.15 3.14 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.31 4.21 -53.39 -0.22 -16.53 16 23 C -0.24 -6.47 10.41 -15.06 -0.16 -6.62 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.47 13.97 55.49 0.78 -27.69 16 27 Si 0.88 21.48 27.74 -169.99 -4.71 16.77 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 30 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 31 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.22 7.00 -51.92 -0.36 0.86 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.01 6.23 -51.93 -0.32 0.69 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 50 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.36 7.96 5.37 -40.82 -0.22 7.75 16 52 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -32.99 405.82 -9.37 -42.36 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.89 Total: 6.86 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.15 Total: -3.38 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.19 Total: -59.62 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.99 -9.37 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036049851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.246 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds