Wall clock time and date at job start Wed Apr 1 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52487 * 2 1 4 4 C 1.52760 * 109.56730 * 240.04649 * 2 1 3 5 5 N 1.46917 * 109.01431 * 185.55247 * 4 2 1 6 6 C 1.34780 * 120.63693 * 233.59013 * 5 4 2 7 7 O 1.21633 * 119.99501 * 5.12470 * 6 5 4 8 8 C 1.47155 * 120.00378 * 185.13303 * 6 5 4 9 9 C 1.37195 * 127.04657 * 267.91203 * 8 6 5 10 10 C 1.40089 * 105.88280 * 179.97438 * 9 8 6 11 11 N 1.30103 * 107.72973 * 359.66524 * 10 9 8 12 12 N 1.28833 * 110.77873 * 0.53781 * 11 10 9 13 13 C 1.46496 * 125.15222 * 179.73789 * 12 11 10 14 14 C 1.50867 * 123.21064 * 179.81835 * 10 9 8 15 15 C 1.53396 * 108.18615 * 343.21566 * 14 10 9 16 16 C 1.53023 * 109.88526 * 50.74851 * 15 14 10 17 17 C 1.50388 * 129.90970 * 0.11049 * 9 8 6 18 18 C 1.46934 * 118.73843 * 53.30510 * 5 4 2 19 19 C 1.53185 * 108.77453 * 306.65195 * 18 5 4 20 20 C 1.53039 * 109.31601 * 54.63116 * 19 18 5 21 21 H 1.08998 * 109.46074 * 58.64264 * 20 19 18 22 22 N 1.46504 * 109.46037 * 178.61214 * 20 19 18 23 23 C 1.36927 * 120.00317 * 274.99711 * 22 20 19 24 24 H 1.08000 * 120.00416 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00047 * 179.97438 * 23 22 20 26 26 N 1.31630 * 119.99634 * 180.02562 * 25 23 22 27 27 Si 1.86789 * 120.00253 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47068 * 89.99796 * 27 25 23 29 29 H 1.48503 * 109.47864 * 209.99947 * 27 25 23 30 30 H 1.48504 * 109.47210 * 330.00183 * 27 25 23 31 31 H 1.08994 * 109.47462 * 299.91700 * 1 2 3 32 32 H 1.09002 * 109.46960 * 59.92202 * 1 2 3 33 33 H 1.09001 * 109.47054 * 179.91509 * 1 2 3 34 34 H 1.09008 * 109.50969 * 65.66671 * 4 2 1 35 35 H 1.09006 * 109.43445 * 305.39572 * 4 2 1 36 36 H 1.09001 * 109.47038 * 264.58094 * 13 12 11 37 37 H 1.09007 * 109.47108 * 24.57591 * 13 12 11 38 38 H 1.08993 * 109.47169 * 144.57814 * 13 12 11 39 39 H 1.09004 * 109.71978 * 223.53955 * 14 10 9 40 40 H 1.09003 * 109.71901 * 102.89116 * 14 10 9 41 41 H 1.08999 * 109.40372 * 290.61889 * 15 14 10 42 42 H 1.09005 * 109.40196 * 170.87680 * 15 14 10 43 43 H 1.08997 * 109.43485 * 168.52046 * 16 15 14 44 44 H 1.08997 * 109.43610 * 48.64918 * 16 15 14 45 45 H 1.08998 * 109.73333 * 283.24322 * 17 9 8 46 46 H 1.08993 * 109.73142 * 43.93220 * 17 9 8 47 47 H 1.09006 * 109.57917 * 66.43130 * 18 5 4 48 48 H 1.08997 * 109.58724 * 186.71336 * 18 5 4 49 49 H 1.09002 * 109.49886 * 174.58069 * 19 18 5 50 50 H 1.09001 * 109.49989 * 294.64175 * 19 18 5 51 51 H 0.97010 * 119.99581 * 95.00127 * 22 20 19 52 52 H 0.96999 * 119.99272 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1696 6 6 4.2812 -0.3855 -2.1779 7 8 3.7797 0.1956 -3.1214 8 6 5.7359 -0.6044 -2.1374 9 6 6.6858 0.2457 -1.6303 10 6 7.9157 -0.3983 -1.8175 11 7 7.6804 -1.5440 -2.3872 12 7 6.4188 -1.6994 -2.5972 13 6 5.8067 -2.8722 -3.2266 14 6 9.2350 0.2019 -1.3984 15 6 9.0256 1.7037 -1.1668 16 6 7.8273 1.9256 -0.2414 17 6 6.5279 1.5971 -0.9896 18 6 4.1054 -1.4267 0.0308 19 6 3.5709 -0.6951 1.2659 20 6 2.0408 -0.7231 1.2483 21 1 1.6967 -1.7573 1.2350 22 7 1.5265 -0.0531 2.4453 23 6 1.3950 -0.7497 3.6168 24 1 1.6709 -1.7930 3.6586 25 6 0.9082 -0.1145 4.7511 26 7 0.7823 -0.7841 5.8773 27 14 0.4318 1.6901 4.6792 28 1 -0.9993 1.8096 4.3009 29 1 0.6454 2.3121 6.0106 30 1 1.2704 2.3836 3.6686 31 1 -0.3634 0.5125 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7646 -0.1496 -2.1346 35 1 1.6021 -1.7149 -1.2976 36 1 5.6657 -2.6814 -4.2905 37 1 6.4582 -3.7363 -3.0957 38 1 4.8411 -3.0714 -2.7620 39 1 9.9743 0.0505 -2.1850 40 1 9.5766 -0.2684 -0.4764 41 1 8.8414 2.1952 -2.1221 42 1 9.9197 2.1276 -0.7095 43 1 7.8065 2.9663 0.0818 44 1 7.9173 1.2775 0.6303 45 1 6.3453 2.3492 -1.7572 46 1 5.6942 1.5765 -0.2879 47 1 3.8375 -2.4818 0.0867 48 1 5.1898 -1.3269 -0.0150 49 1 3.9334 -1.1897 2.1671 50 1 3.9164 0.3387 1.2544 51 1 1.2791 0.8842 2.4079 52 1 0.4425 -0.3402 6.6700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036049851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:56 Heat of formation + Delta-G solvation = 25.239341 kcal Electronic energy + Delta-G solvation = -32198.050671 eV Core-core repulsion = 28198.017013 eV Total energy + Delta-G solvation = -4000.033658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.74605 -41.23059 -39.14183 -37.97395 -36.36674 -34.63026 -33.70493 -33.31946 -32.84101 -31.60223 -30.28831 -28.32164 -27.72944 -26.83990 -24.65294 -24.35391 -23.32668 -23.06231 -22.84426 -21.31854 -20.28109 -19.93823 -19.44305 -18.59425 -17.78132 -16.96724 -16.87371 -16.77566 -16.21492 -16.05800 -15.79944 -15.41634 -15.24435 -14.92683 -14.79295 -14.73424 -14.53426 -14.24492 -14.14741 -13.85439 -13.76605 -13.67974 -13.51076 -13.42070 -13.06481 -12.95323 -12.86117 -12.73543 -12.49625 -12.26563 -12.17878 -12.03324 -11.90047 -11.77185 -11.73774 -11.67208 -11.33870 -11.21601 -11.17285 -10.93575 -10.03935 -9.88684 -9.60238 -9.28008 -7.99644 -5.31727 0.58661 0.93075 1.38966 1.40305 1.47545 1.52038 1.59736 1.96823 2.49799 3.14636 3.29491 3.32129 3.51353 3.72208 3.89679 3.90873 3.96487 4.01614 4.05041 4.10155 4.19919 4.21378 4.27712 4.32650 4.41263 4.49009 4.53773 4.54792 4.61811 4.64838 4.67129 4.70246 4.72369 4.76316 4.87498 4.96142 4.98216 5.04869 5.12150 5.17640 5.19942 5.23522 5.29694 5.34467 5.40473 5.48119 5.53765 5.58442 5.77827 5.80351 6.09251 6.24482 6.78055 7.02578 7.10552 7.87082 8.05298 9.21917 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.003326 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.451008 B = 8416.707719 C = 9447.651009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.063 0.937 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.600 3.400 7 O -0.560 6.560 8 C -0.031 4.031 9 C -0.167 4.167 10 C 0.027 3.973 11 N -0.291 5.291 12 N -0.285 5.285 13 C 0.081 3.919 14 C -0.031 4.031 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.049 4.049 18 C 0.121 3.879 19 C -0.140 4.140 20 C 0.184 3.816 21 H 0.053 0.947 22 N -0.746 5.746 23 C -0.219 4.219 24 H 0.061 0.939 25 C -0.060 4.060 26 N -0.984 5.984 27 Si 0.946 3.054 28 H -0.279 1.279 29 H -0.300 1.300 30 H -0.256 1.256 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.053 0.947 51 H 0.363 0.637 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.176 0.444 -19.763 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.081 0.919 4 C 0.003 3.997 5 N -0.319 5.319 6 C 0.385 3.615 7 O -0.437 6.437 8 C -0.158 4.158 9 C -0.178 4.178 10 C -0.133 4.133 11 N -0.121 5.121 12 N -0.074 5.074 13 C -0.058 4.058 14 C -0.070 4.070 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.002 4.002 19 C -0.181 4.181 20 C 0.076 3.924 21 H 0.071 0.929 22 N -0.388 5.388 23 C -0.350 4.350 24 H 0.079 0.921 25 C -0.252 4.252 26 N -0.635 5.635 27 Si 0.774 3.226 28 H -0.206 1.206 29 H -0.227 1.227 30 H -0.181 1.181 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.196 0.804 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.317 -0.575 -20.614 25.105 hybrid contribution -1.052 1.514 0.958 2.078 sum 13.265 0.940 -19.656 23.732 Atomic orbital electron populations 1.21636 0.93266 1.02585 1.01734 1.21594 0.97204 0.99567 0.94069 0.91899 1.21710 0.77397 1.02269 0.98368 1.48153 1.07348 1.58708 1.17684 1.17126 0.84074 0.78103 0.82164 1.90800 1.74655 1.42532 1.35761 1.20780 0.93119 0.92924 1.09023 1.20609 0.91709 0.99375 1.06115 1.22378 0.97523 0.91367 1.02001 1.72791 0.97981 1.21298 1.20001 1.45966 1.02727 1.14964 1.43713 1.22421 0.99597 0.84788 0.98959 1.20156 0.89479 0.95178 1.02143 1.21558 0.98901 0.94304 1.00098 1.21572 0.92927 1.02460 0.98141 1.20047 0.99406 0.90818 0.98405 1.21763 0.98031 0.97706 0.82705 1.22429 0.98460 1.00367 0.96805 1.20389 0.91243 0.95781 0.84966 0.92884 1.42768 1.78431 1.10046 1.07583 1.18994 1.33829 0.94637 0.87526 0.92063 1.25368 1.02656 1.01786 0.95377 1.69871 1.54470 1.37642 1.01520 0.85547 0.78623 0.81682 0.76733 1.20575 1.22730 1.18094 0.93610 0.91060 0.92008 0.88832 0.88783 0.89001 0.86299 0.88455 0.89258 0.89171 0.91934 0.88609 0.89971 0.91731 0.91021 0.92088 0.89412 0.90026 0.91773 0.92798 0.80412 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.03 71.98 0.65 -2.91 16 2 C -0.10 -2.89 2.44 -10.86 -0.03 -2.92 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.12 2.94 5.70 86.22 0.49 3.43 16 5 N -0.59 -14.57 2.98 -823.91 -2.45 -17.02 16 6 C 0.60 16.71 7.01 86.58 0.61 17.32 16 7 O -0.56 -18.85 16.52 -4.14 -0.07 -18.92 16 8 C -0.03 -0.82 4.75 40.43 0.19 -0.63 16 9 C -0.17 -4.22 5.81 -19.76 -0.11 -4.33 16 10 C 0.03 0.63 7.13 43.32 0.31 0.94 16 11 N -0.29 -7.21 11.89 -47.46 -0.56 -7.78 16 12 N -0.29 -6.65 3.77 -356.73 -1.34 -8.00 16 13 C 0.08 1.22 11.11 127.77 1.42 2.64 16 14 C -0.03 -0.50 6.31 30.03 0.19 -0.31 16 15 C -0.11 -1.53 5.85 30.73 0.18 -1.35 16 16 C -0.11 -1.91 5.88 30.77 0.18 -1.73 16 17 C -0.05 -1.09 6.22 29.92 0.19 -0.90 16 18 C 0.12 2.93 6.32 86.36 0.55 3.48 16 19 C -0.14 -4.31 5.66 30.67 0.17 -4.13 16 20 C 0.18 6.22 2.20 45.02 0.10 6.32 16 21 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 22 N -0.75 -32.31 4.21 -322.82 -1.36 -33.67 16 23 C -0.22 -11.76 10.41 84.04 0.87 -10.88 16 24 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 25 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 26 N -0.98 -61.64 13.97 21.65 0.30 -61.34 16 27 Si 0.95 44.60 27.74 68.60 1.90 46.50 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 30 H -0.26 -11.01 6.52 99.48 0.65 -10.36 16 31 H 0.04 1.43 7.36 -2.39 -0.02 1.41 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 2.28 7.00 -2.38 -0.02 2.26 16 35 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.30 8.14 -2.38 -0.02 1.29 16 38 H 0.10 1.28 7.94 -2.39 -0.02 1.26 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 42 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.08 2.00 6.23 -2.39 -0.01 1.99 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.36 15.54 5.37 -92.70 -0.50 15.05 16 52 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.09 405.82 3.19 -68.90 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.35 Total: 30.27 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.42 Total: 1.05 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.42 Total: -127.80 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.07 Total: -18.92 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -72.09 3.19 -68.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036049851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.140 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds