Wall clock time and date at job start Wed Apr 1 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52623 * 2 1 4 4 C 1.53192 * 109.49406 * 120.07679 * 2 1 3 5 5 N 1.46932 * 108.77562 * 174.58545 * 4 2 1 6 6 C 1.34774 * 120.63050 * 126.37292 * 5 4 2 7 7 O 1.21573 * 119.99690 * 353.02989 * 6 5 4 8 8 C 1.47707 * 120.00156 * 173.03943 * 6 5 4 9 9 C 1.41495 * 126.51984 * 172.88251 * 8 6 5 10 10 C 1.35367 * 105.50286 * 179.97438 * 9 8 6 11 11 N 1.35029 * 107.22919 * 359.97438 * 10 9 8 12 12 C 1.46501 * 124.88453 * 180.02562 * 11 10 9 13 13 C 1.54267 * 110.03320 * 32.16709 * 12 11 10 14 14 C 1.54883 * 104.19971 * 217.10241 * 13 12 11 15 15 C 1.54892 * 102.74443 * 37.94408 * 14 13 12 16 16 C 1.53878 * 110.03336 * 275.00028 * 12 11 10 17 17 N 1.28464 * 110.22975 * 359.74724 * 11 10 9 18 18 C 1.46925 * 118.73735 * 306.39278 * 5 4 2 19 19 C 1.53190 * 108.77705 * 53.60557 * 18 5 4 20 20 C 1.53035 * 109.31346 * 305.36463 * 19 18 5 21 21 H 1.09003 * 109.45857 * 181.38384 * 20 19 18 22 22 N 1.46494 * 109.46114 * 301.34225 * 20 19 18 23 23 C 1.36938 * 120.00263 * 274.99884 * 22 20 19 24 24 H 1.08001 * 119.99911 * 0.02562 * 23 22 20 25 25 C 1.38804 * 120.00202 * 179.97438 * 23 22 20 26 26 N 1.31625 * 120.00074 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00307 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47453 * 89.99188 * 27 25 23 29 29 H 1.48502 * 109.47420 * 209.99919 * 27 25 23 30 30 H 1.48507 * 109.46802 * 329.99617 * 27 25 23 31 31 H 1.09000 * 109.47269 * 180.08405 * 1 2 3 32 32 H 1.08994 * 109.47157 * 300.08918 * 1 2 3 33 33 H 1.09004 * 109.46694 * 60.08337 * 1 2 3 34 34 H 1.09005 * 109.58696 * 54.80034 * 4 2 1 35 35 H 1.08998 * 109.70645 * 294.44456 * 4 2 1 36 36 H 1.08002 * 127.24965 * 359.97438 * 9 8 6 37 37 H 1.08002 * 126.38502 * 180.02562 * 10 9 8 38 38 H 1.09002 * 110.01578 * 153.61255 * 12 11 10 39 39 H 1.08997 * 110.48564 * 335.78499 * 13 12 11 40 40 H 1.08999 * 110.48513 * 98.42351 * 13 12 11 41 41 H 1.08993 * 110.76137 * 279.63026 * 14 13 12 42 42 H 1.08996 * 110.75596 * 156.25595 * 14 13 12 43 43 H 1.08998 * 110.48522 * 203.37687 * 15 14 13 44 44 H 1.09002 * 110.48544 * 80.73806 * 15 14 13 45 45 H 1.08999 * 110.03055 * 238.56694 * 16 12 11 46 46 H 1.08995 * 110.03005 * 0.02562 * 16 12 11 47 47 H 1.08998 * 109.58718 * 293.81977 * 18 5 4 48 48 H 1.09003 * 109.58431 * 173.39399 * 18 5 4 49 49 H 1.08998 * 109.49816 * 185.40661 * 19 18 5 50 50 H 1.09000 * 109.51992 * 65.33145 * 19 18 5 51 51 H 0.96996 * 120.00144 * 95.00067 * 22 20 19 52 52 H 0.96997 * 120.00174 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5046 -0.8291 1.1697 6 6 4.2811 -0.3856 2.1781 7 8 3.7835 0.2204 3.1071 8 6 5.7366 -0.6357 2.1544 9 6 6.6948 -0.1178 3.0575 10 6 7.8851 -0.6142 2.6462 11 7 7.6449 -1.3825 1.5621 12 6 8.6685 -2.1090 0.8066 13 6 9.8028 -2.5583 1.7506 14 6 11.0891 -2.3961 0.9032 15 6 10.8108 -1.0983 0.1048 16 6 9.3094 -1.1807 -0.2400 17 7 6.3891 -1.3893 1.2919 18 6 4.1053 -1.4268 -0.0306 19 6 3.5709 -0.6952 -1.2659 20 6 2.0409 -0.7233 -1.2483 21 1 1.6583 -0.2247 -2.1389 22 7 1.5784 -2.1132 -1.2307 23 6 1.4468 -2.8060 -2.4045 24 1 1.6845 -2.3278 -3.3433 25 6 1.0091 -4.1231 -2.3878 26 7 0.8831 -4.7891 -3.5161 27 14 0.5987 -4.9505 -0.7641 28 1 -0.8348 -4.7307 -0.4448 29 1 0.8646 -6.4076 -0.8698 30 1 1.4403 -4.3707 0.3134 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3633 0.5152 0.8891 33 1 -0.3633 0.5126 -0.8908 34 1 1.6051 -1.7216 1.2981 35 1 1.7636 -0.1600 2.1403 36 1 6.5145 0.5360 3.8980 37 1 8.8474 -0.4307 3.1010 38 1 8.2252 -2.9753 0.3156 39 1 9.8427 -1.9171 2.6312 40 1 9.6667 -3.5998 2.0419 41 1 11.2177 -3.2436 0.2301 42 1 11.9617 -2.2752 1.5449 43 1 11.4104 -1.0743 -0.8052 44 1 11.0136 -0.2213 0.7195 45 1 9.1779 -1.5970 -1.2387 46 1 8.8592 -0.1895 -0.1855 47 1 3.8375 -2.4819 -0.0865 48 1 5.1896 -1.3247 0.0140 49 1 3.9335 -1.1899 -2.1669 50 1 3.9160 0.3386 -1.2545 51 1 1.3653 -2.5428 -0.3875 52 1 0.5769 -5.7094 -3.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036052227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:21 Heat of formation + Delta-G solvation = 65.446656 kcal Electronic energy + Delta-G solvation = -31831.974688 eV Core-core repulsion = 27833.684550 eV Total energy + Delta-G solvation = -3998.290138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.86019 -39.83177 -38.44856 -37.58433 -34.33141 -33.01205 -32.40265 -31.42145 -30.88174 -29.66210 -29.29773 -28.33867 -26.32280 -25.24514 -23.23518 -22.75727 -22.45153 -21.57878 -21.05986 -20.04162 -19.59964 -18.40741 -17.78123 -17.61372 -16.75422 -16.31017 -15.73725 -15.53892 -15.07734 -14.89601 -14.55460 -14.31022 -14.08070 -13.81939 -13.59887 -13.52284 -13.38800 -13.02425 -12.91949 -12.57093 -12.53452 -12.28248 -12.06990 -11.71475 -11.68795 -11.66376 -11.50663 -11.42056 -11.32783 -11.11327 -11.00376 -10.86967 -10.81481 -10.50034 -10.17868 -10.10962 -9.77584 -9.72067 -9.50695 -9.25380 -9.11551 -8.87152 -8.20220 -7.22264 -5.75252 -3.09456 1.60148 2.08417 2.25226 3.29615 3.38030 3.41426 3.46457 3.55962 3.81102 3.97583 4.31714 4.45287 4.57873 4.60468 4.73106 4.81882 4.84074 4.89661 5.04209 5.11985 5.22307 5.23744 5.31287 5.36313 5.39453 5.47742 5.49693 5.53356 5.62160 5.63979 5.65642 5.66482 5.76203 5.77757 5.84698 5.87661 6.01419 6.07676 6.18322 6.25649 6.39254 6.45424 6.47153 6.59779 6.70226 6.74744 6.80538 6.87749 7.05817 7.68456 7.91515 8.02059 8.41611 8.44245 9.23084 9.96008 10.16556 11.43381 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.003345 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.099233 B = 8369.179024 C = 9732.160265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.599 3.401 7 O -0.548 6.548 8 C -0.010 4.010 9 C -0.180 4.180 10 C -0.020 4.020 11 N -0.278 5.278 12 C 0.141 3.859 13 C -0.136 4.136 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.136 4.136 17 N -0.251 5.251 18 C 0.095 3.905 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.059 0.941 22 N -0.743 5.743 23 C -0.236 4.236 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.935 5.935 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.076 0.924 50 H 0.048 0.952 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.928 8.841 10.874 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.386 3.614 7 O -0.425 6.425 8 C -0.170 4.170 9 C -0.208 4.208 10 C -0.163 4.163 11 N -0.066 5.066 12 C 0.040 3.960 13 C -0.174 4.174 14 C -0.160 4.160 15 C -0.162 4.162 16 C -0.175 4.175 17 N -0.086 5.086 18 C -0.028 4.028 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.366 4.366 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.132 0.868 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.194 0.806 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.567 8.327 10.112 24.384 hybrid contribution -0.186 -0.401 1.641 1.699 sum 20.380 7.926 11.753 24.826 Atomic orbital electron populations 1.21674 0.94230 1.02725 1.00914 1.21748 0.96434 0.99341 0.95587 0.91005 1.21675 0.78675 1.00992 0.99087 1.47981 1.06725 1.59180 1.18219 1.17007 0.83526 0.78674 0.82236 1.90738 1.73857 1.42022 1.35891 1.21989 0.95011 1.02697 0.97273 1.21716 0.90477 1.05740 1.02906 1.22669 1.00737 0.99818 0.93027 1.45948 1.05069 1.34249 1.21287 1.22373 0.86143 0.95093 0.92401 1.22836 0.93380 1.02856 0.98351 1.22485 0.96763 0.98257 0.98487 1.22385 0.95152 0.98060 1.00611 1.22600 0.95834 1.00234 0.98809 1.73575 0.90918 1.20779 1.23355 1.22389 0.99933 0.97820 0.82645 1.22485 0.99622 0.98853 0.97910 1.20197 0.91189 0.86068 0.95093 0.92351 1.42834 1.80639 1.09453 1.05764 1.19062 1.37094 0.94169 0.86299 0.89209 1.24613 1.01727 0.96677 0.95970 1.69693 1.53427 1.10825 1.24394 0.86669 0.78475 0.79218 0.84858 1.21070 1.21843 1.20429 0.91744 0.93500 0.92332 0.91511 0.89420 0.82250 0.80542 0.86814 0.89909 0.89942 0.90614 0.90593 0.90768 0.91235 0.89640 0.90502 0.90810 0.86811 0.90509 0.93311 0.80615 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.05 37.16 0.34 -1.83 16 2 C -0.11 -1.85 2.67 -90.50 -0.24 -2.09 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C 0.12 2.05 5.43 -3.71 -0.02 2.03 16 5 N -0.59 -10.45 2.97 -173.93 -0.52 -10.97 16 6 C 0.60 10.74 7.69 -12.39 -0.10 10.64 16 7 O -0.55 -10.84 16.36 5.30 0.09 -10.76 16 8 C -0.01 -0.16 6.82 -82.77 -0.56 -0.72 16 9 C -0.18 -2.27 10.81 -39.37 -0.43 -2.70 16 10 C -0.02 -0.20 10.39 -17.17 -0.18 -0.37 16 11 N -0.28 -3.05 3.14 -53.74 -0.17 -3.22 16 12 C 0.14 1.11 3.88 -66.81 -0.26 0.86 16 13 C -0.14 -0.74 6.35 -25.07 -0.16 -0.90 16 14 C -0.12 -0.51 6.91 -24.74 -0.17 -0.68 16 15 C -0.12 -0.60 6.83 -25.07 -0.17 -0.77 16 16 C -0.14 -0.93 6.60 -25.61 -0.17 -1.10 16 17 N -0.25 -3.63 8.48 33.42 0.28 -3.35 16 18 C 0.09 1.68 5.85 -3.71 -0.02 1.65 16 19 C -0.15 -2.61 5.78 -26.61 -0.15 -2.77 16 20 C 0.18 3.51 2.53 -67.89 -0.17 3.34 16 21 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 22 N -0.74 -16.93 3.44 -53.39 -0.18 -17.12 16 23 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 26 N -0.94 -29.05 13.97 55.49 0.78 -28.28 16 27 Si 0.88 22.17 27.74 -169.99 -4.71 17.45 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 30 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 31 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.23 6.64 -51.93 -0.34 0.89 16 35 H 0.09 1.49 7.00 -51.93 -0.36 1.13 16 36 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.18 1.05 6.80 -52.49 -0.36 0.69 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.41 5.83 -51.93 -0.30 0.10 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 47 H 0.07 1.49 7.74 -51.93 -0.40 1.09 16 48 H 0.11 1.90 4.19 -67.28 -0.28 1.62 16 49 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.36 8.28 3.79 -40.82 -0.15 8.13 16 52 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -33.44 397.96 -9.68 -43.11 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.52 Total: 9.05 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.72 Total: -1.93 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.19 Total: -62.92 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.44 -9.68 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036052227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.560 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds