Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52623 * 2 1 4 4 C 1.53192 * 109.49406 * 120.07679 * 2 1 3 5 5 N 1.46932 * 108.77562 * 174.58545 * 4 2 1 6 6 C 1.34774 * 120.63050 * 126.37292 * 5 4 2 7 7 O 1.21573 * 119.99690 * 353.02989 * 6 5 4 8 8 C 1.47707 * 120.00156 * 173.03943 * 6 5 4 9 9 C 1.41495 * 126.51984 * 172.88251 * 8 6 5 10 10 C 1.35367 * 105.50286 * 179.97438 * 9 8 6 11 11 N 1.35029 * 107.22919 * 359.97438 * 10 9 8 12 12 C 1.46501 * 124.88453 * 180.02562 * 11 10 9 13 13 C 1.54267 * 110.03320 * 32.16709 * 12 11 10 14 14 C 1.54883 * 104.19971 * 217.10241 * 13 12 11 15 15 C 1.54892 * 102.74443 * 37.94408 * 14 13 12 16 16 C 1.53878 * 110.03336 * 275.00028 * 12 11 10 17 17 N 1.28464 * 110.22975 * 359.74724 * 11 10 9 18 18 C 1.46925 * 118.73735 * 306.39278 * 5 4 2 19 19 C 1.53190 * 108.77705 * 53.60557 * 18 5 4 20 20 C 1.53035 * 109.31346 * 305.36463 * 19 18 5 21 21 H 1.09003 * 109.45857 * 181.38384 * 20 19 18 22 22 N 1.46494 * 109.46114 * 301.34225 * 20 19 18 23 23 C 1.36938 * 120.00263 * 274.99884 * 22 20 19 24 24 H 1.08001 * 119.99911 * 0.02562 * 23 22 20 25 25 C 1.38804 * 120.00202 * 179.97438 * 23 22 20 26 26 N 1.31625 * 120.00074 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00307 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47453 * 89.99188 * 27 25 23 29 29 H 1.48502 * 109.47420 * 209.99919 * 27 25 23 30 30 H 1.48507 * 109.46802 * 329.99617 * 27 25 23 31 31 H 1.09000 * 109.47269 * 180.08405 * 1 2 3 32 32 H 1.08994 * 109.47157 * 300.08918 * 1 2 3 33 33 H 1.09004 * 109.46694 * 60.08337 * 1 2 3 34 34 H 1.09005 * 109.58696 * 54.80034 * 4 2 1 35 35 H 1.08998 * 109.70645 * 294.44456 * 4 2 1 36 36 H 1.08002 * 127.24965 * 359.97438 * 9 8 6 37 37 H 1.08002 * 126.38502 * 180.02562 * 10 9 8 38 38 H 1.09002 * 110.01578 * 153.61255 * 12 11 10 39 39 H 1.08997 * 110.48564 * 335.78499 * 13 12 11 40 40 H 1.08999 * 110.48513 * 98.42351 * 13 12 11 41 41 H 1.08993 * 110.76137 * 279.63026 * 14 13 12 42 42 H 1.08996 * 110.75596 * 156.25595 * 14 13 12 43 43 H 1.08998 * 110.48522 * 203.37687 * 15 14 13 44 44 H 1.09002 * 110.48544 * 80.73806 * 15 14 13 45 45 H 1.08999 * 110.03055 * 238.56694 * 16 12 11 46 46 H 1.08995 * 110.03005 * 0.02562 * 16 12 11 47 47 H 1.08998 * 109.58718 * 293.81977 * 18 5 4 48 48 H 1.09003 * 109.58431 * 173.39399 * 18 5 4 49 49 H 1.08998 * 109.49816 * 185.40661 * 19 18 5 50 50 H 1.09000 * 109.51992 * 65.33145 * 19 18 5 51 51 H 0.96996 * 120.00144 * 95.00067 * 22 20 19 52 52 H 0.96997 * 120.00174 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5046 -0.8291 1.1697 6 6 4.2811 -0.3856 2.1781 7 8 3.7835 0.2204 3.1071 8 6 5.7366 -0.6357 2.1544 9 6 6.6948 -0.1178 3.0575 10 6 7.8851 -0.6142 2.6462 11 7 7.6449 -1.3825 1.5621 12 6 8.6685 -2.1090 0.8066 13 6 9.8028 -2.5583 1.7506 14 6 11.0891 -2.3961 0.9032 15 6 10.8108 -1.0983 0.1048 16 6 9.3094 -1.1807 -0.2400 17 7 6.3891 -1.3893 1.2919 18 6 4.1053 -1.4268 -0.0306 19 6 3.5709 -0.6952 -1.2659 20 6 2.0409 -0.7233 -1.2483 21 1 1.6583 -0.2247 -2.1389 22 7 1.5784 -2.1132 -1.2307 23 6 1.4468 -2.8060 -2.4045 24 1 1.6845 -2.3278 -3.3433 25 6 1.0091 -4.1231 -2.3878 26 7 0.8831 -4.7891 -3.5161 27 14 0.5987 -4.9505 -0.7641 28 1 -0.8348 -4.7307 -0.4448 29 1 0.8646 -6.4076 -0.8698 30 1 1.4403 -4.3707 0.3134 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3633 0.5152 0.8891 33 1 -0.3633 0.5126 -0.8908 34 1 1.6051 -1.7216 1.2981 35 1 1.7636 -0.1600 2.1403 36 1 6.5145 0.5360 3.8980 37 1 8.8474 -0.4307 3.1010 38 1 8.2252 -2.9753 0.3156 39 1 9.8427 -1.9171 2.6312 40 1 9.6667 -3.5998 2.0419 41 1 11.2177 -3.2436 0.2301 42 1 11.9617 -2.2752 1.5449 43 1 11.4104 -1.0743 -0.8052 44 1 11.0136 -0.2213 0.7195 45 1 9.1779 -1.5970 -1.2387 46 1 8.8592 -0.1895 -0.1855 47 1 3.8375 -2.4819 -0.0865 48 1 5.1896 -1.3247 0.0140 49 1 3.9335 -1.1899 -2.1669 50 1 3.9160 0.3386 -1.2545 51 1 1.3653 -2.5428 -0.3875 52 1 0.5769 -5.7094 -3.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036052227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = 46.113890 kcal Electronic energy + Delta-G solvation = -31832.813019 eV Core-core repulsion = 27833.684550 eV Total energy + Delta-G solvation = -3999.128470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.79750 -41.22375 -39.25963 -38.82530 -35.99742 -34.61373 -33.40323 -33.09499 -31.81955 -31.48718 -29.75784 -29.13559 -27.57337 -26.75037 -25.08472 -23.90029 -23.31848 -23.01869 -21.51051 -20.87181 -20.79187 -19.94370 -19.68098 -18.49686 -17.92843 -17.20595 -17.00282 -16.65637 -16.46552 -16.11322 -15.75182 -15.66808 -15.37718 -15.12163 -14.95952 -14.55931 -14.48851 -14.35925 -14.31736 -13.86450 -13.69637 -13.34503 -13.13918 -13.08118 -12.94849 -12.72364 -12.65072 -12.52310 -12.27706 -12.12473 -12.08184 -12.03809 -11.95371 -11.82166 -11.70938 -11.49742 -11.45878 -11.25315 -11.13236 -10.81140 -10.23167 -10.06680 -9.64852 -9.24444 -7.99913 -5.30338 0.47916 1.18343 1.35190 1.35508 1.42050 1.42327 2.00008 2.30405 2.47265 3.17835 3.31964 3.45853 3.49778 3.59627 3.74901 3.81636 3.87815 3.97027 4.03287 4.06560 4.27296 4.31907 4.34716 4.37798 4.42400 4.45587 4.50980 4.56264 4.64641 4.68680 4.74675 4.76178 4.80861 4.84968 4.97650 4.98923 5.00675 5.08587 5.09160 5.15366 5.20759 5.22583 5.22984 5.24003 5.39987 5.41914 5.44450 5.62171 5.82136 5.95610 6.24184 6.32659 6.83820 7.10511 7.11368 7.87389 8.06362 9.22066 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.003345 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.099233 B = 8369.179024 C = 9732.160265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.597 3.403 7 O -0.572 6.572 8 C -0.043 4.043 9 C -0.195 4.195 10 C 0.005 3.995 11 N -0.270 5.270 12 C 0.130 3.870 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.134 4.134 17 N -0.277 5.277 18 C 0.105 3.895 19 C -0.140 4.140 20 C 0.178 3.822 21 H 0.053 0.947 22 N -0.741 5.741 23 C -0.212 4.212 24 H 0.062 0.938 25 C -0.058 4.058 26 N -0.983 5.983 27 Si 0.939 3.061 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.264 1.264 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.223 0.777 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.128 0.872 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.361 0.639 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.406 10.030 13.012 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.385 3.615 7 O -0.451 6.451 8 C -0.201 4.201 9 C -0.223 4.223 10 C -0.138 4.138 11 N -0.058 5.058 12 C 0.030 3.970 13 C -0.169 4.169 14 C -0.153 4.153 15 C -0.157 4.157 16 C -0.173 4.173 17 N -0.114 5.114 18 C -0.018 4.018 19 C -0.180 4.180 20 C 0.070 3.930 21 H 0.071 0.929 22 N -0.385 5.385 23 C -0.343 4.343 24 H 0.080 0.920 25 C -0.249 4.249 26 N -0.635 5.635 27 Si 0.768 3.232 28 H -0.205 1.205 29 H -0.225 1.225 30 H -0.189 1.189 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.186 0.814 37 H 0.239 0.761 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.145 0.855 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.195 0.805 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.058 9.559 12.270 27.813 hybrid contribution -0.828 -0.696 0.925 1.423 sum 22.229 8.863 13.195 27.328 Atomic orbital electron populations 1.21648 0.93331 1.01810 1.02413 1.21665 0.97112 0.99579 0.93636 0.89247 1.21668 0.78743 1.00404 0.99621 1.48016 1.06858 1.59249 1.18254 1.17355 0.84619 0.77959 0.81575 1.90705 1.74689 1.43167 1.36553 1.21846 0.94236 1.04715 0.99255 1.21950 0.90771 1.06481 1.03111 1.23256 1.01621 0.97419 0.91550 1.46272 1.04384 1.33680 1.21430 1.22724 0.86107 0.94789 0.93340 1.22865 0.92606 1.03105 0.98277 1.22480 0.96582 0.97854 0.98414 1.22377 0.93263 0.98801 1.01222 1.22576 0.97365 0.98944 0.98368 1.73386 0.92608 1.21378 1.24001 1.22245 1.00836 0.96004 0.82676 1.22362 0.98356 0.99978 0.97342 1.20410 0.92037 0.84182 0.96380 0.92943 1.42794 1.80685 1.10757 1.04264 1.19013 1.34516 0.94018 0.86787 0.91978 1.25259 1.03046 0.97600 0.98986 1.69851 1.55815 1.11089 1.26700 0.85656 0.78548 0.77637 0.81366 1.20470 1.22527 1.18942 0.93799 0.90982 0.91910 0.92845 0.88799 0.81444 0.76097 0.87953 0.88683 0.89786 0.90519 0.88882 0.90133 0.90411 0.89983 0.91995 0.93673 0.85545 0.92002 0.91162 0.80480 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.05 71.98 0.65 -3.36 16 2 C -0.10 -3.20 2.67 -10.71 -0.03 -3.23 16 3 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.12 4.01 5.43 86.36 0.47 4.48 16 5 N -0.59 -20.80 2.97 -822.45 -2.44 -23.24 16 6 C 0.60 21.18 7.69 86.75 0.67 21.84 16 7 O -0.57 -22.40 16.36 -3.95 -0.06 -22.47 16 8 C -0.04 -1.31 6.82 42.45 0.29 -1.02 16 9 C -0.20 -4.57 10.81 22.41 0.24 -4.32 16 10 C 0.00 0.07 10.39 83.54 0.87 0.94 16 11 N -0.27 -5.43 3.14 -323.93 -1.02 -6.45 16 12 C 0.13 1.83 3.88 45.72 0.18 2.01 16 13 C -0.13 -1.01 6.35 31.67 0.20 -0.81 16 14 C -0.12 -0.58 6.91 31.88 0.22 -0.36 16 15 C -0.12 -0.79 6.83 31.67 0.22 -0.57 16 16 C -0.13 -1.62 6.60 31.32 0.21 -1.41 16 17 N -0.28 -7.82 8.48 -48.18 -0.41 -8.23 16 18 C 0.11 3.74 5.85 86.36 0.50 4.24 16 19 C -0.14 -4.92 5.78 30.67 0.18 -4.74 16 20 C 0.18 6.74 2.53 45.02 0.11 6.85 16 21 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 22 N -0.74 -33.99 3.44 -322.83 -1.11 -35.10 16 23 C -0.21 -11.83 10.41 84.03 0.87 -10.95 16 24 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 25 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 26 N -0.98 -62.89 13.97 21.65 0.30 -62.59 16 27 Si 0.94 46.63 27.74 68.60 1.90 48.53 16 28 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 29 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 30 H -0.26 -12.32 6.52 99.48 0.65 -11.68 16 31 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.05 1.95 6.64 -2.38 -0.02 1.93 16 35 H 0.09 3.09 7.00 -2.39 -0.02 3.07 16 36 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.22 1.50 6.80 -2.91 -0.02 1.48 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 0.51 5.83 -2.39 -0.01 0.50 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.38 16 42 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.41 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.95 7.92 -2.39 -0.02 0.93 16 47 H 0.04 1.85 7.74 -2.39 -0.02 1.84 16 48 H 0.13 4.24 4.19 -22.24 -0.09 4.14 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.36 16.56 3.79 -92.71 -0.35 16.21 16 52 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.42 397.96 3.90 -70.51 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.43 Total: 32.35 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.32 Total: 6.68 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -4.68 Total: -135.61 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.90 Total: 48.53 kcal Total: -74.42 3.90 -70.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036052227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.629 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds