Wall clock time and date at job start Wed Apr 1 2020 04:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.52661 * 2 1 4 4 C 1.53194 * 109.50073 * 120.08304 * 2 1 3 5 5 N 1.46923 * 108.89228 * 174.66026 * 4 2 1 6 6 C 1.34776 * 120.63404 * 126.29959 * 5 4 2 7 7 O 1.21605 * 119.99560 * 354.37268 * 6 5 4 8 8 C 1.47423 * 120.00404 * 174.36822 * 6 5 4 9 9 C 1.38045 * 126.41273 * 319.21109 * 8 6 5 10 10 N 1.34268 * 107.41789 * 179.97438 * 9 8 6 11 11 C 1.46495 * 125.75292 * 180.02562 * 10 9 8 12 12 N 1.39938 * 108.48863 * 0.02562 * 10 9 8 13 13 C 1.30445 * 108.89566 * 359.74996 * 12 10 9 14 14 C 1.50708 * 125.98696 * 180.26045 * 13 12 10 15 15 C 1.53788 * 113.61211 * 39.28456 * 14 13 12 16 16 C 1.53957 * 87.01463 * 220.04535 * 15 14 13 17 17 C 1.53782 * 113.61328 * 301.67682 * 14 13 12 18 18 C 1.46931 * 118.73885 * 306.31731 * 5 4 2 19 19 C 1.53191 * 108.77620 * 53.61067 * 18 5 4 20 20 C 1.53045 * 109.31237 * 305.36897 * 19 18 5 21 21 H 1.09003 * 109.45686 * 181.37039 * 20 19 18 22 22 N 1.46500 * 109.45700 * 301.33961 * 20 19 18 23 23 C 1.36937 * 120.00202 * 275.00080 * 22 20 19 24 24 H 1.07996 * 120.00006 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99993 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00019 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47280 * 90.00184 * 27 25 23 29 29 H 1.48497 * 109.46833 * 210.00303 * 27 25 23 30 30 H 1.48501 * 109.47060 * 329.99775 * 27 25 23 31 31 H 1.09004 * 109.46871 * 299.91564 * 1 2 3 32 32 H 1.08999 * 109.47387 * 59.91386 * 1 2 3 33 33 H 1.08998 * 109.47414 * 179.91839 * 1 2 3 34 34 H 1.09001 * 109.58508 * 54.79768 * 4 2 1 35 35 H 1.08997 * 109.58455 * 294.51687 * 4 2 1 36 36 H 1.07996 * 126.29457 * 359.97438 * 9 8 6 37 37 H 1.09000 * 109.46996 * 90.00272 * 11 10 9 38 38 H 1.09009 * 109.46836 * 209.99657 * 11 10 9 39 39 H 1.08994 * 109.47717 * 330.00163 * 11 10 9 40 40 H 1.08998 * 112.85189 * 170.47640 * 14 13 12 41 41 H 1.08999 * 113.61407 * 334.56850 * 15 14 13 42 42 H 1.08998 * 113.61399 * 105.46950 * 15 14 13 43 43 H 1.08998 * 113.53967 * 270.81102 * 16 15 14 44 44 H 1.09007 * 113.73696 * 139.93932 * 16 15 14 45 45 H 1.08998 * 113.60988 * 254.52584 * 17 14 13 46 46 H 1.08996 * 113.61075 * 25.34933 * 17 14 13 47 47 H 1.09000 * 109.58633 * 173.39915 * 18 5 4 48 48 H 1.08999 * 109.58417 * 293.68072 * 18 5 4 49 49 H 1.08998 * 109.49294 * 65.31708 * 19 18 5 50 50 H 1.08997 * 109.49631 * 185.38007 * 19 18 5 51 51 H 0.97001 * 119.99310 * 95.00090 * 22 20 19 52 52 H 0.97006 * 119.99527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5048 -0.8290 1.1729 6 6 4.2790 -0.3844 2.1826 7 8 3.7759 0.2012 3.1221 8 6 5.7358 -0.6081 2.1480 9 6 6.3787 -1.7581 1.7361 10 7 7.6989 -1.5470 1.8603 11 6 8.7541 -2.5089 1.5327 12 7 7.8967 -0.2532 2.3555 13 6 6.7355 0.3162 2.5256 14 6 6.5012 1.7141 3.0376 15 6 7.5124 2.7429 2.5045 16 6 7.5142 3.3536 3.9178 17 6 7.0954 1.9666 4.4333 18 6 4.1083 -1.4277 -0.0255 19 6 3.5766 -0.6973 -1.2626 20 6 2.0465 -0.7255 -1.2484 21 1 1.6658 -0.2276 -2.1402 22 7 1.5842 -2.1155 -1.2306 23 6 1.4554 -2.8094 -2.4041 24 1 1.6950 -2.3320 -3.3427 25 6 1.0178 -4.1267 -2.3871 26 7 0.7263 -4.7085 -1.2431 27 14 0.8428 -5.0734 -3.9879 28 1 2.1211 -5.7629 -4.2975 29 1 -0.2416 -6.0787 -3.8523 30 1 0.5098 -4.1312 -5.0863 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.6053 -1.7217 1.2980 35 1 1.7616 -0.1593 2.1390 36 1 5.9067 -2.6616 1.3794 37 1 9.0482 -2.3846 0.4905 38 1 9.6163 -2.3357 2.1767 39 1 8.3830 -3.5221 1.6870 40 1 5.4630 2.0318 2.9410 41 1 8.4686 2.3063 2.2162 42 1 7.1012 3.4048 1.7424 43 1 6.7534 4.1208 4.0614 44 1 8.5009 3.6667 4.2593 45 1 6.3481 2.0028 5.2260 46 1 7.9366 1.3165 4.6738 47 1 5.1925 -1.3254 0.0214 48 1 3.8429 -2.4835 -0.0796 49 1 3.9215 0.3366 -1.2509 50 1 3.9418 -1.1925 -2.1624 51 1 1.3693 -2.5443 -0.3874 52 1 0.4209 -5.6292 -1.2312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:26 Heat of formation + Delta-G solvation = 74.157450 kcal Electronic energy + Delta-G solvation = -31912.190702 eV Core-core repulsion = 27914.278293 eV Total energy + Delta-G solvation = -3997.912410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.59177 -39.55259 -38.51721 -37.43025 -34.21090 -33.38857 -32.84482 -31.38056 -30.38459 -29.15230 -28.02640 -26.33053 -25.64830 -25.39928 -24.55569 -23.51116 -22.00016 -21.62098 -20.93330 -19.53627 -18.87452 -18.32017 -17.34451 -16.93879 -16.35773 -15.76629 -15.50056 -15.45395 -15.05107 -14.84646 -14.44380 -14.25119 -13.95425 -13.51858 -13.42320 -13.30209 -13.16094 -12.97753 -12.71494 -12.53716 -12.48998 -12.39427 -12.17442 -12.07125 -11.53071 -11.39108 -11.19537 -11.05434 -10.92741 -10.79459 -10.74298 -10.55295 -10.45846 -10.42275 -10.29143 -10.20178 -9.81811 -9.55736 -9.51885 -9.30094 -8.94244 -8.57949 -8.10437 -6.98536 -5.81012 -3.08956 1.57716 2.22490 2.26623 3.26614 3.38703 3.45390 3.46454 3.54433 4.24665 4.48916 4.55502 4.63052 4.65569 4.73731 4.89227 4.92821 4.94781 5.09756 5.15594 5.27626 5.37054 5.39709 5.44761 5.54060 5.57346 5.61026 5.64853 5.72708 5.75873 5.77866 5.83175 5.86822 5.93137 5.98211 6.10143 6.12283 6.14500 6.28431 6.34922 6.38872 6.45002 6.46706 6.53925 6.68216 6.71034 6.75511 6.81860 6.96548 7.06615 7.56672 7.66966 7.84448 8.37811 8.55660 9.49401 10.06855 10.42268 11.41403 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003106 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.319648 B = 9011.893691 C =10229.048500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.592 3.408 7 O -0.551 6.551 8 C -0.275 4.275 9 C 0.098 3.902 10 N -0.365 5.365 11 C 0.099 3.901 12 N -0.299 5.299 13 C 0.137 3.863 14 C -0.034 4.034 15 C -0.129 4.129 16 C -0.141 4.141 17 C -0.123 4.123 18 C 0.111 3.889 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.903 3.097 28 H -0.292 1.292 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.185 0.815 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.707 9.826 7.262 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.329 5.329 6 C 0.380 3.620 7 O -0.430 6.430 8 C -0.289 4.289 9 C -0.053 4.053 10 N -0.143 5.143 11 C -0.042 4.042 12 N -0.120 5.120 13 C -0.030 4.030 14 C -0.054 4.054 15 C -0.167 4.167 16 C -0.178 4.178 17 C -0.161 4.161 18 C -0.011 4.011 19 C -0.189 4.189 20 C 0.069 3.931 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.202 0.798 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.803 10.052 7.625 20.221 hybrid contribution -0.975 -1.283 -1.003 1.899 sum 14.827 8.769 6.622 18.455 Atomic orbital electron populations 1.21656 0.94288 1.03120 1.00404 1.21748 0.96381 0.98895 0.95787 0.91623 1.21622 0.78455 1.01414 0.98633 1.47961 1.06897 1.60102 1.17936 1.17292 0.84655 0.78110 0.81895 1.90716 1.74675 1.42809 1.34816 1.20213 0.94569 0.96313 1.17855 1.23184 0.84130 1.00115 0.97838 1.48249 1.05244 1.11751 1.49098 1.21958 0.89793 0.90084 1.02407 1.77020 1.22225 0.91190 1.21573 1.22082 0.88804 0.96198 0.95895 1.21122 1.00848 0.86875 0.96561 1.22997 0.99496 0.97346 0.96908 1.22841 1.01649 0.96793 0.96538 1.22876 1.00627 0.96855 0.95778 1.21850 0.96775 0.98571 0.83925 1.22494 1.00387 0.98698 0.97342 1.20268 0.90739 0.87262 0.94864 0.93253 1.42478 1.78955 1.07740 1.06921 1.19220 1.36975 0.93809 0.86622 0.91315 1.24693 1.02396 0.97210 0.96545 1.69651 1.51835 1.13015 1.23608 0.86249 0.77235 0.79853 0.83189 1.21917 1.21901 1.20870 0.93736 0.92891 0.91091 0.90768 0.89749 0.79798 0.90255 0.89113 0.89079 0.86814 0.89503 0.91331 0.90027 0.91371 0.90987 0.89959 0.91088 0.90030 0.93358 0.90977 0.78089 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.07 37.15 0.34 -1.87 16 2 C -0.11 -1.79 2.68 -90.34 -0.24 -2.03 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.12 2.07 5.42 -3.71 -0.02 2.05 16 5 N -0.60 -9.87 2.97 -174.04 -0.52 -10.39 16 6 C 0.59 10.14 7.33 -12.52 -0.09 10.04 16 7 O -0.55 -10.75 15.53 5.27 0.08 -10.67 16 8 C -0.27 -4.14 5.20 -105.07 -0.55 -4.68 16 9 C 0.10 1.22 9.11 -16.56 -0.15 1.07 16 10 N -0.37 -4.21 3.98 -67.60 -0.27 -4.48 16 11 C 0.10 0.67 11.44 59.84 0.68 1.36 16 12 N -0.30 -4.06 12.13 33.90 0.41 -3.65 16 13 C 0.14 1.97 6.31 -82.02 -0.52 1.46 16 14 C -0.03 -0.43 3.96 -90.95 -0.36 -0.79 16 15 C -0.13 -1.37 7.63 -25.82 -0.20 -1.57 16 16 C -0.14 -1.30 8.09 -25.82 -0.21 -1.51 16 17 C -0.12 -1.37 7.63 -25.92 -0.20 -1.56 16 18 C 0.11 1.77 5.22 -3.71 -0.02 1.75 16 19 C -0.15 -2.46 5.78 -26.61 -0.15 -2.62 16 20 C 0.18 3.32 2.54 -67.73 -0.17 3.15 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.22 3.65 -53.23 -0.19 -16.41 16 23 C -0.23 -6.02 9.93 -15.06 -0.15 -6.17 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 27 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.32 7.55 -51.93 -0.39 0.92 16 34 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 35 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 36 H 0.19 1.95 7.37 -52.49 -0.39 1.56 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 1.61 7.16 -51.93 -0.37 1.24 16 41 H 0.09 0.96 7.80 -51.93 -0.40 0.55 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 47 H 0.07 1.00 4.83 -51.93 -0.25 0.75 16 48 H 0.08 1.46 7.74 -51.93 -0.40 1.06 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.38 9.29 5.93 -40.82 -0.24 9.05 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -31.34 407.08 -9.37 -40.71 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.62 Total: 10.58 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.10 Total: -2.38 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.15 Total: -60.80 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.34 -9.37 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.869 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds