Wall clock time and date at job start Wed Apr 1 2020 04:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.52661 * 2 1 4 4 C 1.53194 * 109.50073 * 120.08304 * 2 1 3 5 5 N 1.46923 * 108.89228 * 174.66026 * 4 2 1 6 6 C 1.34776 * 120.63404 * 126.29959 * 5 4 2 7 7 O 1.21605 * 119.99560 * 354.37268 * 6 5 4 8 8 C 1.47423 * 120.00404 * 174.36822 * 6 5 4 9 9 C 1.38045 * 126.41273 * 319.21109 * 8 6 5 10 10 N 1.34268 * 107.41789 * 179.97438 * 9 8 6 11 11 C 1.46495 * 125.75292 * 180.02562 * 10 9 8 12 12 N 1.39938 * 108.48863 * 0.02562 * 10 9 8 13 13 C 1.30445 * 108.89566 * 359.74996 * 12 10 9 14 14 C 1.50708 * 125.98696 * 180.26045 * 13 12 10 15 15 C 1.53788 * 113.61211 * 39.28456 * 14 13 12 16 16 C 1.53957 * 87.01463 * 220.04535 * 15 14 13 17 17 C 1.53782 * 113.61328 * 301.67682 * 14 13 12 18 18 C 1.46931 * 118.73885 * 306.31731 * 5 4 2 19 19 C 1.53191 * 108.77620 * 53.61067 * 18 5 4 20 20 C 1.53045 * 109.31237 * 305.36897 * 19 18 5 21 21 H 1.09003 * 109.45686 * 181.37039 * 20 19 18 22 22 N 1.46500 * 109.45700 * 301.33961 * 20 19 18 23 23 C 1.36937 * 120.00202 * 275.00080 * 22 20 19 24 24 H 1.07996 * 120.00006 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99993 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00019 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47280 * 90.00184 * 27 25 23 29 29 H 1.48497 * 109.46833 * 210.00303 * 27 25 23 30 30 H 1.48501 * 109.47060 * 329.99775 * 27 25 23 31 31 H 1.09004 * 109.46871 * 299.91564 * 1 2 3 32 32 H 1.08999 * 109.47387 * 59.91386 * 1 2 3 33 33 H 1.08998 * 109.47414 * 179.91839 * 1 2 3 34 34 H 1.09001 * 109.58508 * 54.79768 * 4 2 1 35 35 H 1.08997 * 109.58455 * 294.51687 * 4 2 1 36 36 H 1.07996 * 126.29457 * 359.97438 * 9 8 6 37 37 H 1.09000 * 109.46996 * 90.00272 * 11 10 9 38 38 H 1.09009 * 109.46836 * 209.99657 * 11 10 9 39 39 H 1.08994 * 109.47717 * 330.00163 * 11 10 9 40 40 H 1.08998 * 112.85189 * 170.47640 * 14 13 12 41 41 H 1.08999 * 113.61407 * 334.56850 * 15 14 13 42 42 H 1.08998 * 113.61399 * 105.46950 * 15 14 13 43 43 H 1.08998 * 113.53967 * 270.81102 * 16 15 14 44 44 H 1.09007 * 113.73696 * 139.93932 * 16 15 14 45 45 H 1.08998 * 113.60988 * 254.52584 * 17 14 13 46 46 H 1.08996 * 113.61075 * 25.34933 * 17 14 13 47 47 H 1.09000 * 109.58633 * 173.39915 * 18 5 4 48 48 H 1.08999 * 109.58417 * 293.68072 * 18 5 4 49 49 H 1.08998 * 109.49294 * 65.31708 * 19 18 5 50 50 H 1.08997 * 109.49631 * 185.38007 * 19 18 5 51 51 H 0.97001 * 119.99310 * 95.00090 * 22 20 19 52 52 H 0.97006 * 119.99527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5048 -0.8290 1.1729 6 6 4.2790 -0.3844 2.1826 7 8 3.7759 0.2012 3.1221 8 6 5.7358 -0.6081 2.1480 9 6 6.3787 -1.7581 1.7361 10 7 7.6989 -1.5470 1.8603 11 6 8.7541 -2.5089 1.5327 12 7 7.8967 -0.2532 2.3555 13 6 6.7355 0.3162 2.5256 14 6 6.5012 1.7141 3.0376 15 6 7.5124 2.7429 2.5045 16 6 7.5142 3.3536 3.9178 17 6 7.0954 1.9666 4.4333 18 6 4.1083 -1.4277 -0.0255 19 6 3.5766 -0.6973 -1.2626 20 6 2.0465 -0.7255 -1.2484 21 1 1.6658 -0.2276 -2.1402 22 7 1.5842 -2.1155 -1.2306 23 6 1.4554 -2.8094 -2.4041 24 1 1.6950 -2.3320 -3.3427 25 6 1.0178 -4.1267 -2.3871 26 7 0.7263 -4.7085 -1.2431 27 14 0.8428 -5.0734 -3.9879 28 1 2.1211 -5.7629 -4.2975 29 1 -0.2416 -6.0787 -3.8523 30 1 0.5098 -4.1312 -5.0863 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.6053 -1.7217 1.2980 35 1 1.7616 -0.1593 2.1390 36 1 5.9067 -2.6616 1.3794 37 1 9.0482 -2.3846 0.4905 38 1 9.6163 -2.3357 2.1767 39 1 8.3830 -3.5221 1.6870 40 1 5.4630 2.0318 2.9410 41 1 8.4686 2.3063 2.2162 42 1 7.1012 3.4048 1.7424 43 1 6.7534 4.1208 4.0614 44 1 8.5009 3.6667 4.2593 45 1 6.3481 2.0028 5.2260 46 1 7.9366 1.3165 4.6738 47 1 5.1925 -1.3254 0.0214 48 1 3.8429 -2.4835 -0.0796 49 1 3.9215 0.3366 -1.2509 50 1 3.9418 -1.1925 -2.1624 51 1 1.3693 -2.5443 -0.3874 52 1 0.4209 -5.6292 -1.2312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:25 Heat of formation + Delta-G solvation = 56.878663 kcal Electronic energy + Delta-G solvation = -31912.939967 eV Core-core repulsion = 27914.278293 eV Total energy + Delta-G solvation = -3998.661674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.61773 -40.89782 -39.38669 -38.87114 -35.81493 -34.54480 -34.15849 -32.97736 -31.46798 -30.87791 -28.82806 -27.62814 -26.75389 -26.49816 -25.70931 -25.23358 -23.16654 -22.94751 -21.91602 -20.72058 -19.88611 -19.64340 -19.22156 -18.14033 -17.54448 -16.84324 -16.57148 -16.53050 -16.34854 -15.98152 -15.91919 -15.72233 -15.50947 -14.84937 -14.75266 -14.52874 -14.28087 -14.00706 -13.84211 -13.72607 -13.54602 -13.34934 -13.27210 -13.04171 -12.96640 -12.83748 -12.80694 -12.65783 -12.40034 -12.09887 -12.08274 -11.93842 -11.86589 -11.61357 -11.54986 -11.37498 -11.22817 -11.12186 -10.88545 -10.80184 -10.25188 -9.70054 -9.44462 -8.89065 -7.85943 -5.11800 0.55952 1.11924 1.43109 1.50654 1.52293 1.59404 1.99263 2.26754 2.61769 3.31891 3.47670 3.58526 3.72382 3.82121 3.82582 3.90651 3.91918 4.02729 4.04823 4.12625 4.13915 4.24422 4.35787 4.42297 4.42863 4.50246 4.57081 4.60194 4.66354 4.69911 4.75806 4.80211 4.86775 4.88431 4.90782 4.98239 5.06404 5.07307 5.09414 5.16539 5.24661 5.28817 5.30257 5.33899 5.41181 5.51130 5.58686 5.62931 5.68827 5.89004 6.35834 6.47915 6.60050 7.22588 7.43715 8.19487 8.44307 9.37153 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003106 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.319648 B = 9011.893691 C =10229.048500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.126 3.874 5 N -0.596 5.596 6 C 0.593 3.407 7 O -0.582 6.582 8 C -0.307 4.307 9 C 0.108 3.892 10 N -0.357 5.357 11 C 0.087 3.913 12 N -0.309 5.309 13 C 0.128 3.872 14 C -0.046 4.046 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.123 4.123 18 C 0.122 3.878 19 C -0.141 4.141 20 C 0.175 3.825 21 H 0.046 0.954 22 N -0.723 5.723 23 C -0.224 4.224 24 H 0.073 0.927 25 C -0.071 4.071 26 N -0.967 5.967 27 Si 0.961 3.039 28 H -0.289 1.289 29 H -0.303 1.303 30 H -0.274 1.274 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.203 0.797 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.375 0.625 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 10.737 6.521 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.100 0.900 4 C 0.004 3.996 5 N -0.327 5.327 6 C 0.383 3.617 7 O -0.463 6.463 8 C -0.322 4.322 9 C -0.044 4.044 10 N -0.135 5.135 11 C -0.052 4.052 12 N -0.131 5.131 13 C -0.039 4.039 14 C -0.066 4.066 15 C -0.160 4.160 16 C -0.165 4.165 17 C -0.161 4.161 18 C -0.001 4.001 19 C -0.182 4.182 20 C 0.066 3.934 21 H 0.064 0.936 22 N -0.364 5.364 23 C -0.356 4.356 24 H 0.091 0.909 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.792 3.208 28 H -0.217 1.217 29 H -0.231 1.231 30 H -0.199 1.199 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.220 0.780 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.811 11.001 6.854 22.028 hybrid contribution -1.528 -1.547 -0.761 2.304 sum 16.283 9.453 6.093 19.790 Atomic orbital electron populations 1.21587 0.93946 1.01566 1.01742 1.21672 0.96608 0.99179 0.94383 0.90030 1.21483 0.79039 1.00261 0.98865 1.47965 1.06568 1.60034 1.18143 1.17591 0.85551 0.77309 0.81232 1.90688 1.75475 1.44271 1.35851 1.20166 0.93493 0.97964 1.20603 1.23392 0.84575 0.99801 0.96656 1.48658 1.05823 1.11565 1.47410 1.22397 0.89081 0.90147 1.03589 1.76983 1.21874 0.92206 1.22027 1.22300 0.88825 0.96783 0.95946 1.21181 1.00403 0.86998 0.98034 1.22948 0.98528 0.96698 0.97866 1.22809 1.02761 0.95817 0.95066 1.22862 1.00241 0.98174 0.94820 1.21749 0.97943 0.97064 0.83319 1.22376 0.98521 0.99851 0.97431 1.20453 0.92051 0.85251 0.95651 0.93646 1.42565 1.79037 1.09129 1.05664 1.19539 1.34651 0.93787 0.87656 0.90860 1.25342 1.03641 0.98400 0.98966 1.69799 1.53876 1.12829 1.25353 0.85312 0.76646 0.78437 0.80382 1.21674 1.23069 1.19925 0.91715 0.92258 0.93979 0.92807 0.89921 0.77997 0.88655 0.88115 0.86710 0.88731 0.89803 0.90742 0.89099 0.89757 0.91482 0.90318 0.88885 0.92156 0.91527 0.91416 0.79179 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.07 71.98 0.65 -3.49 16 2 C -0.10 -3.18 2.68 -10.61 -0.03 -3.21 16 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.13 4.34 5.42 86.36 0.47 4.81 16 5 N -0.60 -19.55 2.97 -822.78 -2.45 -22.00 16 6 C 0.59 20.30 7.33 86.66 0.64 20.93 16 7 O -0.58 -23.08 15.53 -4.05 -0.06 -23.15 16 8 C -0.31 -9.06 5.20 -20.15 -0.10 -9.16 16 9 C 0.11 2.53 9.11 84.27 0.77 3.30 16 10 N -0.36 -7.47 3.98 -367.78 -1.46 -8.94 16 11 C 0.09 0.93 11.44 127.77 1.46 2.39 16 12 N -0.31 -7.96 12.13 -46.67 -0.57 -8.53 16 13 C 0.13 3.60 6.31 43.52 0.27 3.87 16 14 C -0.05 -1.16 3.96 -11.01 -0.04 -1.20 16 15 C -0.12 -2.44 7.63 31.18 0.24 -2.20 16 16 C -0.13 -2.13 8.09 31.18 0.25 -1.88 16 17 C -0.12 -2.65 7.63 31.12 0.24 -2.42 16 18 C 0.12 3.74 5.22 86.36 0.45 4.19 16 19 C -0.14 -4.49 5.78 30.67 0.18 -4.31 16 20 C 0.17 6.34 2.54 45.12 0.11 6.46 16 21 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 22 N -0.72 -32.76 3.65 -322.31 -1.18 -33.94 16 23 C -0.22 -11.44 9.93 84.03 0.83 -10.60 16 24 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 26 N -0.97 -56.22 13.06 21.65 0.28 -55.93 16 27 Si 0.96 44.25 29.55 68.60 2.03 46.27 16 28 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 30 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.58 7.55 -2.39 -0.02 1.56 16 34 H 0.05 2.07 6.64 -2.39 -0.02 2.06 16 35 H 0.08 2.87 6.99 -2.39 -0.02 2.86 16 36 H 0.20 3.88 7.37 -2.91 -0.02 3.86 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 2.73 7.16 -2.39 -0.02 2.72 16 41 H 0.08 1.72 7.80 -2.39 -0.02 1.71 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 47 H 0.09 2.46 4.83 -2.39 -0.01 2.45 16 48 H 0.06 2.15 7.74 -2.39 -0.02 2.13 16 49 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.37 18.54 5.93 -92.71 -0.55 17.99 16 52 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -67.95 407.08 3.82 -64.13 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.37 Total: 37.99 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.86 Total: 4.09 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -5.37 Total: -129.33 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.95 3.82 -64.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.007 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds