Wall clock time and date at job start Wed Apr 1 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52104 * 2 1 4 4 C 1.53193 * 109.49774 * 120.08032 * 2 1 3 5 5 N 1.46921 * 108.77709 * 174.58605 * 4 2 1 6 6 C 1.34778 * 120.62950 * 126.40980 * 5 4 2 7 7 O 1.21600 * 120.00189 * 354.35341 * 6 5 4 8 8 C 1.47433 * 119.99697 * 174.35394 * 6 5 4 9 9 C 1.38041 * 126.41549 * 319.23291 * 8 6 5 10 10 N 1.34255 * 107.41687 * 179.97438 * 9 8 6 11 11 C 1.46503 * 125.75627 * 180.02562 * 10 9 8 12 12 N 1.39939 * 108.49507 * 359.97438 * 10 9 8 13 13 C 1.30451 * 108.89392 * 359.73691 * 12 10 9 14 14 C 1.50697 * 125.99091 * 180.26311 * 13 12 10 15 15 C 1.53781 * 113.61132 * 37.66728 * 14 13 12 16 16 C 1.53781 * 87.07999 * 220.02069 * 15 14 13 17 17 C 1.53775 * 87.08448 * 25.43414 * 16 15 14 18 18 C 1.46922 * 118.74146 * 306.39200 * 5 4 2 19 19 C 1.53198 * 108.77453 * 53.60197 * 18 5 4 20 20 C 1.53033 * 109.31498 * 305.37128 * 19 18 5 21 21 H 1.09001 * 109.46097 * 301.35426 * 20 19 18 22 22 N 1.46503 * 109.46225 * 181.38632 * 20 19 18 23 23 C 1.36932 * 120.00031 * 84.99439 * 22 20 19 24 24 H 1.08001 * 120.00522 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99740 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00081 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47035 * 179.97438 * 27 25 23 29 29 H 1.48502 * 109.46823 * 299.99363 * 27 25 23 30 30 H 1.48497 * 109.47236 * 59.99913 * 27 25 23 31 31 H 1.09009 * 109.47023 * 180.08400 * 1 2 3 32 32 H 1.09001 * 109.47206 * 300.07941 * 1 2 3 33 33 H 1.09004 * 109.47214 * 60.08466 * 1 2 3 34 34 H 1.09001 * 109.58930 * 54.79333 * 4 2 1 35 35 H 1.09004 * 109.58712 * 294.37439 * 4 2 1 36 36 H 1.08001 * 126.29432 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47084 * 89.99922 * 11 10 9 38 38 H 1.08993 * 109.47288 * 210.00104 * 11 10 9 39 39 H 1.09000 * 109.46640 * 329.99709 * 11 10 9 40 40 H 1.08995 * 112.85178 * 168.97611 * 14 13 12 41 41 H 1.08996 * 113.61500 * 334.56908 * 15 14 13 42 42 H 1.09003 * 113.61407 * 105.47305 * 15 14 13 43 43 H 1.09005 * 113.61546 * 270.88427 * 16 15 14 44 44 H 1.09003 * 113.69576 * 139.99876 * 16 15 14 45 45 H 1.09000 * 113.61980 * 220.02296 * 17 16 15 46 46 H 1.08997 * 113.68894 * 89.12141 * 17 16 15 47 47 H 1.09004 * 109.58421 * 293.82063 * 18 5 4 48 48 H 1.08996 * 109.70920 * 173.46552 * 18 5 4 49 49 H 1.08997 * 109.49487 * 185.41622 * 19 18 5 50 50 H 1.09001 * 109.49457 * 65.32431 * 19 18 5 51 51 H 0.96998 * 119.99765 * 265.00022 * 22 20 19 52 52 H 0.97004 * 120.00016 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1696 6 6 4.2810 -0.3863 2.1783 7 8 3.7802 0.1981 3.1197 8 6 5.7377 -0.6106 2.1403 9 6 6.3793 -1.7601 1.7249 10 7 7.6996 -1.5498 1.8468 11 6 8.7539 -2.5115 1.5152 12 7 7.8992 -0.2566 2.3429 13 6 6.7386 0.3134 2.5156 14 6 6.5060 1.7109 3.0292 15 6 7.5402 2.7320 2.5265 16 6 7.5143 3.3363 3.9404 17 6 7.0709 1.9510 4.4393 18 6 4.1053 -1.4267 -0.0306 19 6 3.5707 -0.6951 -1.2660 20 6 2.0408 -0.7231 -1.2483 21 1 1.6967 -1.7573 -1.2350 22 7 1.5264 -0.0531 -2.4453 23 6 1.3951 -0.7498 -3.6168 24 1 1.6702 -1.7933 -3.6583 25 6 0.9082 -0.1147 -4.7510 26 7 0.5724 1.1568 -4.7003 27 14 0.7283 -1.0653 -6.3491 28 1 0.1909 -0.1665 -7.4019 29 1 2.0554 -1.5826 -6.7693 30 1 -0.2048 -2.2026 -6.1462 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5125 -0.8908 34 1 1.6052 -1.7216 1.2981 35 1 1.7637 -0.1579 2.1389 36 1 5.9061 -2.6628 1.3675 37 1 9.0459 -2.3854 0.4727 38 1 9.6174 -2.3399 2.1577 39 1 8.3826 -3.5248 1.6686 40 1 5.4734 2.0390 2.9108 41 1 8.4988 2.2871 2.2593 42 1 7.1545 3.4020 1.7581 43 1 6.7578 4.1101 4.0707 44 1 8.4959 3.6384 4.3057 45 1 6.3062 1.9903 5.2150 46 1 7.9002 1.2916 4.6954 47 1 3.8375 -2.4819 -0.0866 48 1 5.1898 -1.3268 0.0125 49 1 3.9333 -1.1898 -2.1670 50 1 3.9159 0.3388 -1.2541 51 1 1.2790 0.8840 -2.4079 52 1 0.2325 1.6007 -5.4931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:31 Heat of formation + Delta-G solvation = 72.617268 kcal Electronic energy + Delta-G solvation = -31470.201126 eV Core-core repulsion = 27472.221929 eV Total energy + Delta-G solvation = -3997.979197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.70641 -39.62975 -38.56198 -37.43885 -34.56231 -33.50344 -32.87636 -31.45392 -30.52197 -29.26817 -28.11037 -26.44446 -25.65747 -25.40400 -24.68957 -23.09081 -21.82998 -21.66546 -21.00966 -19.81206 -19.16307 -18.82859 -17.22712 -17.00755 -16.53150 -15.88504 -15.60643 -15.54000 -15.12442 -14.90050 -14.73825 -14.09746 -13.79016 -13.70575 -13.51799 -13.31807 -13.24597 -13.11172 -12.79981 -12.52315 -12.50421 -12.37503 -12.27521 -12.09702 -11.71157 -11.54140 -11.23937 -11.09652 -10.92690 -10.81547 -10.76054 -10.61485 -10.55291 -10.36861 -10.34740 -10.23289 -9.74771 -9.68508 -9.59823 -9.40214 -8.90756 -8.70753 -8.35221 -6.96015 -5.77533 -3.06062 1.44400 2.12606 2.15156 3.07154 3.38834 3.41591 3.46296 3.47547 4.13619 4.39248 4.57089 4.57506 4.60245 4.64149 4.78805 4.82319 4.89490 5.00753 5.05430 5.13112 5.29511 5.29627 5.38814 5.39136 5.44973 5.53934 5.61969 5.63611 5.70699 5.71929 5.73659 5.82924 5.83776 5.91809 6.01465 6.11659 6.12322 6.16976 6.30800 6.33858 6.42385 6.43017 6.46376 6.57767 6.63719 6.71184 6.83800 6.96117 7.08520 7.45803 7.63585 7.67237 8.38724 8.40793 9.51988 10.10240 10.45106 11.44933 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.002756 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.254221 B =10158.057072 C =10664.992050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.594 3.406 7 O -0.545 6.545 8 C -0.275 4.275 9 C 0.094 3.906 10 N -0.364 5.364 11 C 0.098 3.902 12 N -0.296 5.296 13 C 0.140 3.860 14 C -0.035 4.035 15 C -0.130 4.130 16 C -0.141 4.141 17 C -0.122 4.122 18 C 0.104 3.896 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.236 -5.534 16.521 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.335 5.335 6 C 0.382 3.618 7 O -0.424 6.424 8 C -0.290 4.290 9 C -0.057 4.057 10 N -0.143 5.143 11 C -0.043 4.043 12 N -0.117 5.117 13 C -0.027 4.027 14 C -0.056 4.056 15 C -0.168 4.168 16 C -0.178 4.178 17 C -0.161 4.161 18 C -0.020 4.020 19 C -0.192 4.192 20 C 0.074 3.926 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.214 1.214 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.200 0.800 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.333 -5.343 16.901 24.103 hybrid contribution -0.954 -0.625 -1.366 1.779 sum 15.380 -5.968 15.535 22.660 Atomic orbital electron populations 1.21657 0.94174 1.01684 1.01838 1.21739 0.96499 1.00139 0.94626 0.91215 1.21694 0.78267 1.00657 0.99418 1.48000 1.06957 1.60759 1.17783 1.17306 0.84668 0.77957 0.81826 1.90733 1.74743 1.42230 1.34646 1.20209 0.94492 0.96389 1.17881 1.23080 0.84263 0.99989 0.98326 1.48264 1.05188 1.11864 1.48962 1.21960 0.89878 0.89909 1.02514 1.77065 1.22194 0.91066 1.21406 1.22118 0.88725 0.96226 0.95644 1.21144 1.00916 0.86877 0.96620 1.22968 0.99308 0.97431 0.97082 1.22812 1.01663 0.96791 0.96566 1.22876 1.00632 0.96989 0.95573 1.21996 0.98092 0.96951 0.84947 1.22667 1.00351 1.00478 0.95667 1.20185 0.90308 0.95608 0.86454 0.93515 1.42403 1.76489 1.11400 1.05774 1.19159 1.35982 0.94004 0.87773 0.91351 1.24723 1.02122 0.96002 0.98007 1.69647 1.49960 1.09451 1.28963 0.86311 0.77695 0.78732 0.83684 1.21755 1.21379 1.21328 0.93119 0.93807 0.90805 0.91693 0.89277 0.79995 0.90171 0.89031 0.89183 0.86782 0.89462 0.91172 0.89945 0.91340 0.90972 0.90013 0.91812 0.90335 0.90800 0.92216 0.78209 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.03 37.16 0.34 -1.88 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.12 1.79 5.73 -3.71 -0.02 1.77 16 5 N -0.60 -8.68 2.97 -174.03 -0.52 -9.20 16 6 C 0.59 9.21 7.33 -12.52 -0.09 9.12 16 7 O -0.55 -9.91 15.57 5.28 0.08 -9.82 16 8 C -0.27 -3.74 5.21 -105.06 -0.55 -4.29 16 9 C 0.09 0.98 9.11 -16.56 -0.15 0.83 16 10 N -0.36 -3.69 3.98 -67.60 -0.27 -3.95 16 11 C 0.10 0.52 11.44 59.85 0.68 1.21 16 12 N -0.30 -3.78 12.09 33.90 0.41 -3.37 16 13 C 0.14 1.91 6.32 -82.02 -0.52 1.39 16 14 C -0.04 -0.44 3.95 -90.96 -0.36 -0.80 16 15 C -0.13 -1.40 7.62 -25.92 -0.20 -1.60 16 16 C -0.14 -1.31 8.08 -25.92 -0.21 -1.52 16 17 C -0.12 -1.32 7.63 -25.92 -0.20 -1.52 16 18 C 0.10 1.35 5.48 -3.71 -0.02 1.33 16 19 C -0.15 -2.53 5.66 -26.61 -0.15 -2.68 16 20 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -17.22 4.41 -53.39 -0.24 -17.46 16 23 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 27 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 36 H 0.18 1.32 7.37 -52.49 -0.39 0.93 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.11 1.61 7.21 -51.93 -0.37 1.23 16 41 H 0.09 0.97 7.77 -51.93 -0.40 0.57 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.93 4.84 -51.93 -0.25 0.68 16 49 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.38 9.97 7.51 -40.82 -0.31 9.66 16 52 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -33.09 410.95 -9.47 -42.55 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.77 Total: 9.37 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.06 Total: -4.30 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.11 Total: -60.88 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.09 -9.47 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.171 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds